Typing tool
|
|
|
|
|
|
Typing tool
|
Complete norovirus genomes
| X86557 | GII.4 Bristol | |
|
|---|---|---|---|
| GII.P4 Bristol |
ORF1: 5..5104
ORF2: 5085..6704
ORF3: 6704..7510
LOCUS X86557 7555 bp RNA linear VRL 18-APR-2005
DEFINITION Lordsdale virus complete genome.
ACCESSION X86557
VERSION X86557.1
KEYWORDS capsid protein; complete genome; polyprotein.
SOURCE Lordsdale virus
ORGANISM Lordsdale virus
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norovirus norwalkense.
REFERENCE 1 (bases 1 to 7555)
AUTHORS Liu,B.L., Clarke,I.N., Caul,E.O. and Lambden,P.R.
TITLE Human enteric caliciviruses have a unique genome structure and are
distinct from the Norwalk-like viruses
JOURNAL Arch. Virol. 140 (8), 1345-1356 (1995)
PUBMED 7661689
REFERENCE 2
AUTHORS Dingle,K.E., Lambden,P.R., Caul,E.O. and Clarke,I.N.
TITLE Human enteric Caliciviridae: the complete genome sequence and
expression of virus-like particles from a genetic group II small
round structured virus
JOURNAL J. Gen. Virol. 76 (PT 9), 2349-2355 (1995)
PUBMED 7561776
REFERENCE 3 (bases 1 to 7555)
AUTHORS Dingle,K.E.
TITLE Direct Submission
JOURNAL Submitted (24-APR-1995) K.E. Dingle, University of Southampton
Medical School, Dept. of Molecular Microbiology, Southampton
General Hospital, Southampton, SO16 6YD, UK
FEATURES Location/Qualifiers
source 1..7555
/organism="Lordsdale virus"
/mol_type="genomic RNA"
/db_xref="taxon:82658"
gene 5..5104
/gene="orf1"
CDS 5..5104
/gene="orf1"
/codon_start=1
/product="polyprotein"
/protein_id="CAA60254.1"
/db_xref="GOA:P54634"
/db_xref="InterPro:IPR000605"
/db_xref="InterPro:IPR001205"
/db_xref="InterPro:IPR001665"
/db_xref="InterPro:IPR003593"
/db_xref="InterPro:IPR007094"
/db_xref="InterPro:IPR009003"
/db_xref="InterPro:IPR013614"
/db_xref="InterPro:IPR014759"
/db_xref="UniProtKB/Swiss-Prot:P54634"
/translation="MKMASNDASAAAVVNSNNDTAKSSSDGVLSSMAVTFKRALGGRA
KQPPPRETPQRPPRPPTPELVKKIPPPPPNGEDELVVSYSVKDGVSGLPELSTVRQPD
EANTAFSVPPLNQRENRDAKEPLTGTILEMWDGEIYHYGLYVERGLVLGVHKPPAAIS
LAKVELTPLSLFWRPVYTPQYLISPDTLKRLHGESFPYTAFDNNCYAFCCWVLDLNDS
WLSRRMIQRTTGFFRPYQDWNRKPLPTMDDSKLKKVANVFLCALSSLFTRPIKDIIGK
LRPLNILNILASCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPED
LAVELVPIVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFP
KKEEANELAMVRSIEDAVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARKLST
KSASPDIVGTINALLARIAAARSLVHRAKEELSSRLRPVVVMISGKPGIGKTHLAREL
AKRIAASLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTC
PLTLNCDRIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEK
AKRDFPGQPDMWKNAFSPDFSHIKLALAPQGGFDKNGNTPHGKGVMKTLTTGSLIARA
SGLLHERLDEYELQGPALTTFNFDRNKVLAFRQLAAENKYGLMDTMKVGRQLKDVRTM
PELKQALKNISIKRCQIVYSGCTYTLESDGKGNVKVDRVQSATVQTNHELAGALHHLR
CARIRYYVKCVQEALYSIIQIAGAAFVTTRIVKRMNIQDLWSKPQVEDTEDTANKDGC
PKPKDDEEFVVSSDDIKTEGKKGKNKTGRGKKHTAFSSKGLSDEEYDEYKRIREERNG
KYSIEEYLQDRDKYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLV
TGSEIRKRNPDDFKPKGKLWADDDRSVDYNEKLDFEAPPSIWSRIVNFGSGWGFWVSP
SLFITSTHVIPQGAQEFFGVPVKQIQIHKSGEFCRLRFPKPIRTDVTGMILEEGAPEG
TVVTLLIKRSTGELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGD
CGCPYIYKRENDYVVIGVHTAAARGGNTVICATQGSEGEATLEGGDNKGTYCGAPILG
PGSAPKLSTKTKFWRSSTAPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEP
RGKPPKPSVLEAAKRTIINVLEQTIDPPQKWSFTQACASLDKTTSSGHPHHMRKNDCW
NGESFTGKLADQASKANLMFEEGKNMTPVYTGALKDELVKTDKIYGKIKKRLLWGSDL
ATMIRCARAFGGLMDELKAHCVTLPIRVGMNMNEDGPIIFERHSRYKYHYDADYSRWD
STQQRAVLAAALEIMVKFSPEPHLAQIVAEDLLSPSVMDVGDFKISINEGLPSGVPCT
SQWNSIAHWLLTLCALSEVTNLSPDIIQANSLFSFYGDDEIVSTDINLNPEKLTAKLK
EYGLKPTRPDKTEGPLIISEDLNGLTFLRRTVTRDPAGWFGKLDQSSILRQMYWTRGP
NHEDPSETMIPHSQRPIQLMSLLGEAALHGPAFYSKISKLVIAELKEGGMDFYVPRQE
PMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
gene 5085..6704
/gene="orf2"
CDS 5085..6704
/gene="orf2"
/codon_start=1
/product="capsid protein"
/protein_id="CAA60255.1"
/db_xref="GOA:P54635"
/db_xref="InterPro:IPR004005"
/db_xref="InterPro:IPR013643"
/db_xref="UniProtKB/Swiss-Prot:P54635"
/translation="MKMASNDANPSDGSAANLVPEVNNEVMALEPVVGAAIAAPVAGQ
QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLSRMYNGYAGG
FEVQVILAGNAFTAGKVIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD
VRNNFYHYNQANDSTLKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP
TVESRTKPFTVPVLTVEEMSNSRFPIPLEKLYTGPSSAFVVQPQNGRCTTDGVLLGTT
QLSAVNICNFRGDVTHIAGSHDYTMNLASQNWSNYDPTEEIPAPLGTPDFVGKIQGLL
TQTTRADGSTRAHKATVSTGSVHFTPKLGSVQFTTDTNNDFQAGQNTKFTPVGVIQDG
DHHQNEPQQWSLPNYSGRTGHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMNLDC
LLPQEWVLHFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYITVAHTGPYDLVL
PPNGYFRFDSWVNQFYTLAPMGNGTGRRRAL"
gene 6704..7510
/gene="orf3"
CDS 6704..7510
/gene="orf3"
/codon_start=1
/protein_id="CAA60256.1"
/db_xref="GOA:P54636"
/db_xref="InterPro:IPR004278"
/db_xref="UniProtKB/Swiss-Prot:P54636"
/translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA
SFQFSSTLQQASFQHDKEMLQAQIEATQKLQQDLMKVKQAVLLEGGFSTADAARGAIN
APMTKALDWSGTRYWAPDARVTTYNAGHFSTPQSLGALTGRTNSRVSAPARSSPSALS
NAPTATSLHSNQTVSTRLGSSAGSGTGVSSLSSAARTRSWVEDQNRNLSPFMRGALNT
SFVTPPSSRSSSQSTVSTVPKEILDSWTGAFNTRRQPLFAHIRKRGESRV"
ORIGIN
1 gtgaatgaag atggcgtcta acgacgcttc cgctgccgct gttgttaaca gcaacaacga
61 caccgcaaaa tcttcaagtg acggagtact ttctagcatg gctgtcactt ttaaacgagc
121 cctcgggggg cgggctaaac agcctccccc gagggaaaca ccacaaagac ccccacgacc
181 acctacccca gaactggtca aaaagatccc ccctcccccg cctaacgggg aggatgaact
241 agtggtttct tatagtgtca aagatggcgt ttccggtctg cctgagcttt ccactgtcag
301 gcaaccggat gaagccaaca cggccttcag cgttccccca ctcaaccaga gggagaatag
361 ggacgccaag gagccactaa ctggaacaat cctggaaatg tgggacggag agatctacca
421 ttacggtctg tatgtggaac gaggacttgt acttggtgtg cacaaaccac cagctgccat
481 cagcctcgcc aaggtcgaac taacaccact ctccttgttc tggaggcctg tatacactcc
541 ccagtatctc atctccccag acactctcaa gagattgcac ggagaatcgt tcccctatac
601 agcttttgac aacaattgct atgccttctg ttgttgggtc ttagacctga acgactcgtg
661 gttgagtagg agaatgatcc agagaacaac tggtttcttc agaccctatc aagattggaa
721 taggaagccc ctccccacta tggatgattc taaattaaag aaggtagcta acgtattcct
781 gtgtgctcta tcctcactat tcaccagacc catcaaagac ataataggga agctgagacc
841 ccttaacatc ctcaacatcc tggcctcatg tgattggact tttgcaggca tagtggaatc
901 cttgatactc ttggcagagc tctttggagt tttctggaca cccccagatg tgtctgcgat
961 gattgccccc ttgctaggtg attacgagct gcaggggcct gaggaccttg cagtggaact
1021 cgtaccaata gtgatggggg gaattggttt ggtgctagga tttaccaaag agaagattgg
1081 gaagatgttg tcatctgctg catccacctt aagagcttgc aaagatcttg gcgcatacgg
1141 gctggaaatc ctaaaactag tcatgaagtg gttcttccca aagaaagaag aagcaaatga
1201 actggctatg gtgagatcca tcgaggacgc ggtgctggac ctcgaggcaa ttgaaaacaa
1261 ccatatgacc accctgctca aagacaaaga cagtctggca acctacatga gaactcttga
1321 ccttgaggag gagaaagcca ggaagctttc aaccaagtct gcttcacctg acattgtggg
1381 cacaatcaac gctctcctgg cgagaattgc tgctgcacgt tccctggtgc atcgagcgaa
1441 ggaggagctt tccagcagac taagacctgt tgttgtgatg atatcaggca aaccagggat
1501 agggaagacc caccttgcca gggaactggc caagagaatc gcagcctccc tcacagggga
1561 ccagcgtgta ggtctcatcc cacgcaatgg cgtcgaccac tgggacgcgt acaaggggga
1621 gagggtcgtt ctgtgggacg attatggaat gagtaacccc atccatgatg ccctcaggtt
1681 acaagaactc gctgacactt gcccccttac gctgaactgt gacaggatcg agaacaaagg
1741 aaaggtcttt gacagtgatg ccataattat caccaccaat ctggccaacc cagcaccact
1801 ggactatgtc aactttgaag cttgctcgag gcgcattgac ttcttagtct atgcagaagc
1861 ccctgaagtc gagaaggcga aacgtgactt cccaggccaa cctgacatgt ggaagaacgc
1921 tttcagccct gatttctcgc acataaaact ggcgctggct ccacagggtg gcttcgacaa
1981 gaatggaaac accccacatg ggaagggcgt catgaagact ctcaccactg gttccctcat
2041 tgctcgagca tcagggctac tccatgagag gttggacgag tacgagctac agggcccagc
2101 tctcaccact tttaactttg atcgcaacaa ggtgcttgct tttaggcagc ttgccgctga
2161 gaacaaatat gggctgatgg acacaatgaa agttggaaga cagctcaagg atgtcagaac
2221 catgccagag cttaaacaag cactcaagaa tatctcaatc aagaggtgcc agatagtgta
2281 cagtggttgc acttacacac ttgagtctga tggcaagggc aatgtgaaag ttgacagagt
2341 tcaaagtgcc accgtacaga ccaaccacga gctggccggt gccctacacc acctgaggtg
2401 cgccagaatt aggtattacg tcaagtgtgt ccaggaggcc ctgtattcca tcattcaaat
2461 tgccggagct gcatttgtca ccacacgcat cgttaagcgt atgaacatac aggacctctg
2521 gtccaagcca caggtggaag acacagagga cactgccaac aaggatgggt gccctaaacc
2581 caaagatgat gaggagttcg tcgtctcatc cgacgacatc aaaactgagg gcaagaaggg
2641 gaagaacaag actggccgtg gcaagaaaca cacagccttt tcaagcaaag gtcttagtga
2701 tgaagagtac gatgagtaca aaaggatcag ggaagaaaga aacggcaagt attccataga
2761 agagtacctt caggacaggg acaagtacta tgaggaggtg gccattgcca gggcgaccga
2821 ggaggacttc tgtgaagaag aagaggccaa gattcggcaa aggattttca ggccaacaag
2881 gaaacaacgc aaggaagaga gggcctctct tggtctagtc acaggctctg aaatcaggaa
2941 gagaaaccca gatgatttca agcccaaggg aaagctgtgg gctgatgatg acaggagtgt
3001 tgactacaat gagaaactcg atttcgaggc cccaccaagc atctggtcga ggatagtcaa
3061 ctttggttca ggttggggct tttgggtttc tcccagcctg ttcataacat caactcatgt
3121 cataccccag ggcgcacaag agttcttcgg ggtccccgtc aagcaaattc agatacacaa
3181 atcgggcgaa ttctgccgct tgaggttccc aaaaccaatc agaactgatg tgacgggcat
3241 gatcttagaa gaaggtgcgc ccgaaggcac tgtagtcaca ctactcatca agaggtcaac
3301 tggagagctt atgcctttag cagccagaat gggaacccat gcaaccatga aaatccaagg
3361 gcgtactgtt ggaggccaaa tgggcatgct tttgacaggg tccaacgcca aaagtatgga
3421 tctaggcact acaccaggtg actgtggctg tccctacatc tacaagagag aaaatgacta
3481 cgtggttatt ggggtccaca cggctgccgc tcgcggtgga aacactgtca tatgtgccac
3541 ccaggggagt gagggagagg ccacacttga aggtggtgac aacaagggaa cctactgtgg
3601 cgcaccaatc ctaggtccag gaagtgcccc aaaactcagc accaagacta aattctggag
3661 atcatccaca gcaccgctcc cacctggtac ctatgagcca gcctaccttg gtggtaagga
3721 ccctagagtc aagggtggcc cctcattgca acaagttatg agggaccagc tgaaaccgtt
3781 cacagaaccc aggggcaaac caccaaagcc aagtgtgctg gaggctgcca agagaaccat
3841 catcaatgtc cttgagcaaa caattgatcc acctcagaaa tggtcattca cgcaagcctg
3901 cgcgtcactc gacaagacaa cttccagtgg ccatccgcac cacatgcgga agaacgactg
3961 ctggaacggg gaatccttca caggcaagtt ggcagatcag gcttccaagg ccaacctgat
4021 gttcgaagag gggaaaaaca tgaccccagt ttacacaggt gcgctcaagg atgagctggt
4081 caagactgac aaaatttatg gcaagatcaa gaagaggctt ctctggggct cggacttagc
4141 gaccatgatc cggtgcgctc gagcattcgg aggcttgatg gatgaactca aggcacactg
4201 tgttacactt cccatcagag ttggcatgaa tatgaatgag gatggcccca tcatcttcga
4261 gagacactcc agatacaagt atcactatga tgctgactac tctcggtggg attcaacaca
4321 acaaagggcc gtgttagcag cagccctaga aatcatggtt aaattctccc cagaaccgca
4381 tttggcccag atagttgcag aagaccttct atctcctagt gtgatggatg tgggtgactt
4441 caaaatatca atcaatgagg gccttccctc tggtgtgccc tgcacctctc aatggaattc
4501 catcgcccac tggctcctca ctctctgtgc actctctgaa gttacaaacc tgtcccctga
4561 catcatacag gctaattccc tcttttcctt ctatggtgat gatgaaattg tcagtacaga
4621 tataaactta aacccagaga aactaacagc aaagctcaag gaatacgggt tgaaaccaac
4681 ccgccctgac aaaactgagg gaccccttat tatctctgaa gacctgaacg gcctcacctt
4741 cctgcggagg actgtgaccc gcgacccagc tggttggttt ggaaaactgg atcagagctc
4801 aatacttagg caaatgtact ggactagagg ccccaatcat gaagacccat ctgaaacaat
4861 gataccacac tcccaaagac ccatacaact aatgtctttg ctgggcgagg ccgcactcca
4921 cggcccagca ttctacagca aaattagcaa gctagtcatt gcagaactga aggaaggtgg
4981 catggatttt tacgtgccca gacaagagcc aatgttcaga tggatgagat tctcagatct
5041 gagcacgtgg gagggcgatc gcaatctggc tcccagcttt gtgaatgaag atggcgtcga
5101 atgacgccaa cccatctgat gggtccgcag ccaacctcgt cccagaggtc aataatgagg
5161 ttatggctct ggagcccgtt gttggtgccg ctattgcggc acctgtggcg ggccaacaaa
5221 acgtaattga cccctggatt agaaacaatt ttgtacaagc ccctggtgga gagttcacag
5281 tgtcccctag aaacgctcca ggtgagatac tgtggagcgc gcccttgggc cctgatctga
5341 acccctatct ttctcatttg tccagaatgt acaatggtta tgcaggtggt tttgaagtgc
5401 aagtaatcct cgcggggaat gcgttcaccg ccgggaaagt catatttgca gcagtcccac
5461 caaactttcc tactgaaggc ttaagcccca gccaggttac tatgttcccc catataattg
5521 tagatgttag acaattggaa cctgtgttga tccccctacc tgatgttagg aataatttct
5581 atcattacaa tcaagcaaat gattctaccc tcaagttgat agcaatgttg tacacaccac
5641 tcagagctaa taatgccggg gatgatgtct tcacagtctc ttgtcgagtc ctcacgaggc
5701 catcccccga ttttgatttt atatttctgg tgccacccac agttgaatca agaactaaac
5761 cattcactgt cccagtcttg actgttgagg aaatgtctaa ttcaagattc cccattcctt
5821 tggaaaagct ttacacgggc cctagtagtg cttttgttgt ccaaccacaa aatggcagat
5881 gtacgactga tggcgtactt ctaggcacta cccagctgtc agctgttaat atctgtaact
5941 ttagggggga tgttacccat attgcgggta gccatgatta cacaatgaat ttggcatccc
6001 aaaattggag caattatgac ccaacagaag agatcccagc ccccctagga acgccagact
6061 ttgtgggaaa gatccaaggc ttgctcaccc agaccacaag agcggacggc tcgacccgtg
6121 cccacaaagc tacagtgagc actgggagtg tccacttcac tccaaagctg ggtagtgttc
6181 aattcaccac tgacacgaac aatgatttcc aagctggcca aaacacaaaa ttcaccccag
6241 ttggcgtcat ccaagacggt gatcaccacc agaatgaacc ccaacaatgg tcactcccaa
6301 attactcagg tagaactggt cacaatgtgc acctggcccc tgctgtcgcc cccactttcc
6361 ccggtgagca gcttcttttc tttagatcca ccatgccagg gtgtagcggg taccccaaca
6421 tgaatttgga ttgcttactc ccccaggaat gggtgttgca cttttaccag gaagcagccc
6481 cagcacaatc cgatgtggca ctgctgagat ttgtgaatcc agatacaggt agggttctgt
6541 ttgagtgcaa gcttcataaa tcaggctata tcacagtggc ccacaccggc ccgtatgatt
6601 tggttctccc ccctaatggt tatttcagat ttgattcttg ggtcaaccag ttctacacac
6661 tcgcccccat gggaaatgga acggggcgca ggcgtgcatt ataatggctg gagctttctt
6721 tgctggattg gcatctgatg tcctcggctc tggacttggt tctttaatca atgctggagc
6781 tggagccatc aatcaaaaag ttgaatttga aaataatagg aaattacaac aagcttcctt
6841 tcaatttagt agcaccctac aacaggcttc tttccaacat gataaagaga tgctccaagc
6901 acaaattgag gctactcaaa aattacaaca agatctgatg aaggttaaac aggcagtgct
6961 cctagagggt gggttttcca cagcagatgc ggcccgtggg gcaatcaacg cccccatgac
7021 aaaggctctg gactggagcg gaacaaggta ctgggcccct gatgccaggg tcacaacata
7081 caatgcaggc cacttttcca cccctcagtc tttgggggcg ttgacaggaa ggactaattc
7141 tagggtctct gctcctgctc ggagctcccc cagtgcactt tctaatgctc ctactgccac
7201 ttctttgcat tcaaatcaaa ctgtttctac gagactaggt tcttcagctg gttctggtac
7261 cggtgtctcg agtctctcgt cagctgcaag gactaggagt tgggttgagg accaaaacag
7321 aaatttgtca cccttcatga ggggggctct caacacatca tttgtcaccc ctccatctag
7381 tagatcctcc agtcaaagca cagtctcaac cgtgcctaaa gaaattttgg actcctggac
7441 tggcgctttc aacacgcgca ggcagcctct cttcgctcac attcgcaaac gaggggagtc
7501 acgggtgtaa tgtgaaaaga caagattgat tatctttcct ttctttagtg tcttt
//