Typing tool
|
Complete norovirus genomes
X86557 | GII.4 Sydney | ||
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GII.P12 |
ORF1: 5..5104 ORF2: 5085..6704 ORF3: 6704..7510LOCUS X86557 7555 bp RNA linear VRL 18-APR-2005 DEFINITION Lordsdale virus complete genome. ACCESSION X86557 VERSION X86557.1 KEYWORDS capsid protein; complete genome; polyprotein. SOURCE Lordsdale virus ORGANISM Lordsdale virus Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 7555) AUTHORS Liu,B.L., Clarke,I.N., Caul,E.O. and Lambden,P.R. TITLE Human enteric caliciviruses have a unique genome structure and are distinct from the Norwalk-like viruses JOURNAL Arch. Virol. 140 (8), 1345-1356 (1995) PUBMED 7661689 REFERENCE 2 AUTHORS Dingle,K.E., Lambden,P.R., Caul,E.O. and Clarke,I.N. TITLE Human enteric Caliciviridae: the complete genome sequence and expression of virus-like particles from a genetic group II small round structured virus JOURNAL J. Gen. Virol. 76 (PT 9), 2349-2355 (1995) PUBMED 7561776 REFERENCE 3 (bases 1 to 7555) AUTHORS Dingle,K.E. TITLE Direct Submission JOURNAL Submitted (24-APR-1995) K.E. Dingle, University of Southampton Medical School, Dept. of Molecular Microbiology, Southampton General Hospital, Southampton, SO16 6YD, UK FEATURES Location/Qualifiers source 1..7555 /organism="Lordsdale virus" /mol_type="genomic RNA" /db_xref="taxon:82658" gene 5..5104 /gene="orf1" CDS 5..5104 /gene="orf1" /codon_start=1 /product="polyprotein" /protein_id="CAA60254.1" /db_xref="GOA:P54634" /db_xref="InterPro:IPR000605" /db_xref="InterPro:IPR001205" /db_xref="InterPro:IPR001665" /db_xref="InterPro:IPR003593" /db_xref="InterPro:IPR007094" /db_xref="InterPro:IPR009003" /db_xref="InterPro:IPR013614" /db_xref="InterPro:IPR014759" /db_xref="UniProtKB/Swiss-Prot:P54634" /translation="MKMASNDASAAAVVNSNNDTAKSSSDGVLSSMAVTFKRALGGRA KQPPPRETPQRPPRPPTPELVKKIPPPPPNGEDELVVSYSVKDGVSGLPELSTVRQPD EANTAFSVPPLNQRENRDAKEPLTGTILEMWDGEIYHYGLYVERGLVLGVHKPPAAIS LAKVELTPLSLFWRPVYTPQYLISPDTLKRLHGESFPYTAFDNNCYAFCCWVLDLNDS WLSRRMIQRTTGFFRPYQDWNRKPLPTMDDSKLKKVANVFLCALSSLFTRPIKDIIGK LRPLNILNILASCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPED LAVELVPIVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFP KKEEANELAMVRSIEDAVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARKLST KSASPDIVGTINALLARIAAARSLVHRAKEELSSRLRPVVVMISGKPGIGKTHLAREL AKRIAASLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTC PLTLNCDRIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEK AKRDFPGQPDMWKNAFSPDFSHIKLALAPQGGFDKNGNTPHGKGVMKTLTTGSLIARA SGLLHERLDEYELQGPALTTFNFDRNKVLAFRQLAAENKYGLMDTMKVGRQLKDVRTM PELKQALKNISIKRCQIVYSGCTYTLESDGKGNVKVDRVQSATVQTNHELAGALHHLR CARIRYYVKCVQEALYSIIQIAGAAFVTTRIVKRMNIQDLWSKPQVEDTEDTANKDGC PKPKDDEEFVVSSDDIKTEGKKGKNKTGRGKKHTAFSSKGLSDEEYDEYKRIREERNG KYSIEEYLQDRDKYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLV TGSEIRKRNPDDFKPKGKLWADDDRSVDYNEKLDFEAPPSIWSRIVNFGSGWGFWVSP SLFITSTHVIPQGAQEFFGVPVKQIQIHKSGEFCRLRFPKPIRTDVTGMILEEGAPEG TVVTLLIKRSTGELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGD CGCPYIYKRENDYVVIGVHTAAARGGNTVICATQGSEGEATLEGGDNKGTYCGAPILG PGSAPKLSTKTKFWRSSTAPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEP RGKPPKPSVLEAAKRTIINVLEQTIDPPQKWSFTQACASLDKTTSSGHPHHMRKNDCW NGESFTGKLADQASKANLMFEEGKNMTPVYTGALKDELVKTDKIYGKIKKRLLWGSDL ATMIRCARAFGGLMDELKAHCVTLPIRVGMNMNEDGPIIFERHSRYKYHYDADYSRWD STQQRAVLAAALEIMVKFSPEPHLAQIVAEDLLSPSVMDVGDFKISINEGLPSGVPCT SQWNSIAHWLLTLCALSEVTNLSPDIIQANSLFSFYGDDEIVSTDINLNPEKLTAKLK EYGLKPTRPDKTEGPLIISEDLNGLTFLRRTVTRDPAGWFGKLDQSSILRQMYWTRGP NHEDPSETMIPHSQRPIQLMSLLGEAALHGPAFYSKISKLVIAELKEGGMDFYVPRQE PMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE" gene 5085..6704 /gene="orf2" CDS 5085..6704 /gene="orf2" /codon_start=1 /product="capsid protein" /protein_id="CAA60255.1" /db_xref="GOA:P54635" /db_xref="InterPro:IPR004005" /db_xref="InterPro:IPR013643" /db_xref="UniProtKB/Swiss-Prot:P54635" /translation="MKMASNDANPSDGSAANLVPEVNNEVMALEPVVGAAIAAPVAGQ QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLSRMYNGYAGG FEVQVILAGNAFTAGKVIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD VRNNFYHYNQANDSTLKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP TVESRTKPFTVPVLTVEEMSNSRFPIPLEKLYTGPSSAFVVQPQNGRCTTDGVLLGTT QLSAVNICNFRGDVTHIAGSHDYTMNLASQNWSNYDPTEEIPAPLGTPDFVGKIQGLL TQTTRADGSTRAHKATVSTGSVHFTPKLGSVQFTTDTNNDFQAGQNTKFTPVGVIQDG DHHQNEPQQWSLPNYSGRTGHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMNLDC LLPQEWVLHFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYITVAHTGPYDLVL PPNGYFRFDSWVNQFYTLAPMGNGTGRRRAL" gene 6704..7510 /gene="orf3" CDS 6704..7510 /gene="orf3" /codon_start=1 /protein_id="CAA60256.1" /db_xref="GOA:P54636" /db_xref="InterPro:IPR004278" /db_xref="UniProtKB/Swiss-Prot:P54636" /translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA SFQFSSTLQQASFQHDKEMLQAQIEATQKLQQDLMKVKQAVLLEGGFSTADAARGAIN APMTKALDWSGTRYWAPDARVTTYNAGHFSTPQSLGALTGRTNSRVSAPARSSPSALS NAPTATSLHSNQTVSTRLGSSAGSGTGVSSLSSAARTRSWVEDQNRNLSPFMRGALNT SFVTPPSSRSSSQSTVSTVPKEILDSWTGAFNTRRQPLFAHIRKRGESRV" ORIGIN 1 gtgaatgaag atggcgtcta acgacgcttc cgctgccgct gttgttaaca gcaacaacga 61 caccgcaaaa tcttcaagtg acggagtact ttctagcatg gctgtcactt ttaaacgagc 121 cctcgggggg cgggctaaac agcctccccc gagggaaaca ccacaaagac ccccacgacc 181 acctacccca gaactggtca aaaagatccc ccctcccccg cctaacgggg aggatgaact 241 agtggtttct tatagtgtca aagatggcgt ttccggtctg cctgagcttt ccactgtcag 301 gcaaccggat gaagccaaca cggccttcag cgttccccca ctcaaccaga gggagaatag 361 ggacgccaag gagccactaa ctggaacaat cctggaaatg tgggacggag agatctacca 421 ttacggtctg tatgtggaac gaggacttgt acttggtgtg cacaaaccac cagctgccat 481 cagcctcgcc aaggtcgaac taacaccact ctccttgttc tggaggcctg tatacactcc 541 ccagtatctc atctccccag acactctcaa gagattgcac ggagaatcgt tcccctatac 601 agcttttgac aacaattgct atgccttctg ttgttgggtc ttagacctga acgactcgtg 661 gttgagtagg agaatgatcc agagaacaac tggtttcttc agaccctatc aagattggaa 721 taggaagccc ctccccacta tggatgattc taaattaaag aaggtagcta acgtattcct 781 gtgtgctcta tcctcactat tcaccagacc catcaaagac ataataggga agctgagacc 841 ccttaacatc ctcaacatcc tggcctcatg tgattggact tttgcaggca tagtggaatc 901 cttgatactc ttggcagagc tctttggagt tttctggaca cccccagatg tgtctgcgat 961 gattgccccc ttgctaggtg attacgagct gcaggggcct gaggaccttg cagtggaact 1021 cgtaccaata gtgatggggg gaattggttt ggtgctagga tttaccaaag agaagattgg 1081 gaagatgttg tcatctgctg catccacctt aagagcttgc aaagatcttg gcgcatacgg 1141 gctggaaatc ctaaaactag tcatgaagtg gttcttccca aagaaagaag aagcaaatga 1201 actggctatg gtgagatcca tcgaggacgc ggtgctggac ctcgaggcaa ttgaaaacaa 1261 ccatatgacc accctgctca aagacaaaga cagtctggca acctacatga gaactcttga 1321 ccttgaggag gagaaagcca ggaagctttc aaccaagtct gcttcacctg acattgtggg 1381 cacaatcaac gctctcctgg cgagaattgc tgctgcacgt tccctggtgc atcgagcgaa 1441 ggaggagctt tccagcagac taagacctgt tgttgtgatg atatcaggca aaccagggat 1501 agggaagacc caccttgcca gggaactggc caagagaatc gcagcctccc tcacagggga 1561 ccagcgtgta ggtctcatcc cacgcaatgg cgtcgaccac tgggacgcgt acaaggggga 1621 gagggtcgtt ctgtgggacg attatggaat gagtaacccc atccatgatg ccctcaggtt 1681 acaagaactc gctgacactt gcccccttac gctgaactgt gacaggatcg agaacaaagg 1741 aaaggtcttt gacagtgatg ccataattat caccaccaat ctggccaacc cagcaccact 1801 ggactatgtc aactttgaag cttgctcgag gcgcattgac ttcttagtct atgcagaagc 1861 ccctgaagtc gagaaggcga aacgtgactt cccaggccaa cctgacatgt ggaagaacgc 1921 tttcagccct gatttctcgc acataaaact ggcgctggct ccacagggtg gcttcgacaa 1981 gaatggaaac accccacatg ggaagggcgt catgaagact ctcaccactg gttccctcat 2041 tgctcgagca tcagggctac tccatgagag gttggacgag tacgagctac agggcccagc 2101 tctcaccact tttaactttg atcgcaacaa ggtgcttgct tttaggcagc ttgccgctga 2161 gaacaaatat gggctgatgg acacaatgaa agttggaaga cagctcaagg atgtcagaac 2221 catgccagag cttaaacaag cactcaagaa tatctcaatc aagaggtgcc agatagtgta 2281 cagtggttgc acttacacac ttgagtctga tggcaagggc aatgtgaaag ttgacagagt 2341 tcaaagtgcc accgtacaga ccaaccacga gctggccggt gccctacacc acctgaggtg 2401 cgccagaatt aggtattacg tcaagtgtgt ccaggaggcc ctgtattcca tcattcaaat 2461 tgccggagct gcatttgtca ccacacgcat cgttaagcgt atgaacatac aggacctctg 2521 gtccaagcca caggtggaag acacagagga cactgccaac aaggatgggt gccctaaacc 2581 caaagatgat gaggagttcg tcgtctcatc cgacgacatc aaaactgagg gcaagaaggg 2641 gaagaacaag actggccgtg gcaagaaaca cacagccttt tcaagcaaag gtcttagtga 2701 tgaagagtac gatgagtaca aaaggatcag ggaagaaaga aacggcaagt attccataga 2761 agagtacctt caggacaggg acaagtacta tgaggaggtg gccattgcca gggcgaccga 2821 ggaggacttc tgtgaagaag aagaggccaa gattcggcaa aggattttca ggccaacaag 2881 gaaacaacgc aaggaagaga gggcctctct tggtctagtc acaggctctg aaatcaggaa 2941 gagaaaccca gatgatttca agcccaaggg aaagctgtgg gctgatgatg acaggagtgt 3001 tgactacaat gagaaactcg atttcgaggc cccaccaagc atctggtcga ggatagtcaa 3061 ctttggttca ggttggggct tttgggtttc tcccagcctg ttcataacat caactcatgt 3121 cataccccag ggcgcacaag agttcttcgg ggtccccgtc aagcaaattc agatacacaa 3181 atcgggcgaa ttctgccgct tgaggttccc aaaaccaatc agaactgatg tgacgggcat 3241 gatcttagaa gaaggtgcgc ccgaaggcac tgtagtcaca ctactcatca agaggtcaac 3301 tggagagctt atgcctttag cagccagaat gggaacccat gcaaccatga aaatccaagg 3361 gcgtactgtt ggaggccaaa tgggcatgct tttgacaggg tccaacgcca aaagtatgga 3421 tctaggcact acaccaggtg actgtggctg tccctacatc tacaagagag aaaatgacta 3481 cgtggttatt ggggtccaca cggctgccgc tcgcggtgga aacactgtca tatgtgccac 3541 ccaggggagt gagggagagg ccacacttga aggtggtgac aacaagggaa cctactgtgg 3601 cgcaccaatc ctaggtccag gaagtgcccc aaaactcagc accaagacta aattctggag 3661 atcatccaca gcaccgctcc cacctggtac ctatgagcca gcctaccttg gtggtaagga 3721 ccctagagtc aagggtggcc cctcattgca acaagttatg agggaccagc tgaaaccgtt 3781 cacagaaccc aggggcaaac caccaaagcc aagtgtgctg gaggctgcca agagaaccat 3841 catcaatgtc cttgagcaaa caattgatcc acctcagaaa tggtcattca cgcaagcctg 3901 cgcgtcactc gacaagacaa cttccagtgg ccatccgcac cacatgcgga agaacgactg 3961 ctggaacggg gaatccttca caggcaagtt ggcagatcag gcttccaagg ccaacctgat 4021 gttcgaagag gggaaaaaca tgaccccagt ttacacaggt gcgctcaagg atgagctggt 4081 caagactgac aaaatttatg gcaagatcaa gaagaggctt ctctggggct cggacttagc 4141 gaccatgatc cggtgcgctc gagcattcgg aggcttgatg gatgaactca aggcacactg 4201 tgttacactt cccatcagag ttggcatgaa tatgaatgag gatggcccca tcatcttcga 4261 gagacactcc agatacaagt atcactatga tgctgactac tctcggtggg attcaacaca 4321 acaaagggcc gtgttagcag cagccctaga aatcatggtt aaattctccc cagaaccgca 4381 tttggcccag atagttgcag aagaccttct atctcctagt gtgatggatg tgggtgactt 4441 caaaatatca atcaatgagg gccttccctc tggtgtgccc tgcacctctc aatggaattc 4501 catcgcccac tggctcctca ctctctgtgc actctctgaa gttacaaacc tgtcccctga 4561 catcatacag gctaattccc tcttttcctt ctatggtgat gatgaaattg tcagtacaga 4621 tataaactta aacccagaga aactaacagc aaagctcaag gaatacgggt tgaaaccaac 4681 ccgccctgac aaaactgagg gaccccttat tatctctgaa gacctgaacg gcctcacctt 4741 cctgcggagg actgtgaccc gcgacccagc tggttggttt ggaaaactgg atcagagctc 4801 aatacttagg caaatgtact ggactagagg ccccaatcat gaagacccat ctgaaacaat 4861 gataccacac tcccaaagac ccatacaact aatgtctttg ctgggcgagg ccgcactcca 4921 cggcccagca ttctacagca aaattagcaa gctagtcatt gcagaactga aggaaggtgg 4981 catggatttt tacgtgccca gacaagagcc aatgttcaga tggatgagat tctcagatct 5041 gagcacgtgg gagggcgatc gcaatctggc tcccagcttt gtgaatgaag atggcgtcga 5101 atgacgccaa cccatctgat gggtccgcag ccaacctcgt cccagaggtc aataatgagg 5161 ttatggctct ggagcccgtt gttggtgccg ctattgcggc acctgtggcg ggccaacaaa 5221 acgtaattga cccctggatt agaaacaatt ttgtacaagc ccctggtgga gagttcacag 5281 tgtcccctag aaacgctcca ggtgagatac tgtggagcgc gcccttgggc cctgatctga 5341 acccctatct ttctcatttg tccagaatgt acaatggtta tgcaggtggt tttgaagtgc 5401 aagtaatcct cgcggggaat gcgttcaccg ccgggaaagt catatttgca gcagtcccac 5461 caaactttcc tactgaaggc ttaagcccca gccaggttac tatgttcccc catataattg 5521 tagatgttag acaattggaa cctgtgttga tccccctacc tgatgttagg aataatttct 5581 atcattacaa tcaagcaaat gattctaccc tcaagttgat agcaatgttg tacacaccac 5641 tcagagctaa taatgccggg gatgatgtct tcacagtctc ttgtcgagtc ctcacgaggc 5701 catcccccga ttttgatttt atatttctgg tgccacccac agttgaatca agaactaaac 5761 cattcactgt cccagtcttg actgttgagg aaatgtctaa ttcaagattc cccattcctt 5821 tggaaaagct ttacacgggc cctagtagtg cttttgttgt ccaaccacaa aatggcagat 5881 gtacgactga tggcgtactt ctaggcacta cccagctgtc agctgttaat atctgtaact 5941 ttagggggga tgttacccat attgcgggta gccatgatta cacaatgaat ttggcatccc 6001 aaaattggag caattatgac ccaacagaag agatcccagc ccccctagga acgccagact 6061 ttgtgggaaa gatccaaggc ttgctcaccc agaccacaag agcggacggc tcgacccgtg 6121 cccacaaagc tacagtgagc actgggagtg tccacttcac tccaaagctg ggtagtgttc 6181 aattcaccac tgacacgaac aatgatttcc aagctggcca aaacacaaaa ttcaccccag 6241 ttggcgtcat ccaagacggt gatcaccacc agaatgaacc ccaacaatgg tcactcccaa 6301 attactcagg tagaactggt cacaatgtgc acctggcccc tgctgtcgcc cccactttcc 6361 ccggtgagca gcttcttttc tttagatcca ccatgccagg gtgtagcggg taccccaaca 6421 tgaatttgga ttgcttactc ccccaggaat gggtgttgca cttttaccag gaagcagccc 6481 cagcacaatc cgatgtggca ctgctgagat ttgtgaatcc agatacaggt agggttctgt 6541 ttgagtgcaa gcttcataaa tcaggctata tcacagtggc ccacaccggc ccgtatgatt 6601 tggttctccc ccctaatggt tatttcagat ttgattcttg ggtcaaccag ttctacacac 6661 tcgcccccat gggaaatgga acggggcgca ggcgtgcatt ataatggctg gagctttctt 6721 tgctggattg gcatctgatg tcctcggctc tggacttggt tctttaatca atgctggagc 6781 tggagccatc aatcaaaaag ttgaatttga aaataatagg aaattacaac aagcttcctt 6841 tcaatttagt agcaccctac aacaggcttc tttccaacat gataaagaga tgctccaagc 6901 acaaattgag gctactcaaa aattacaaca agatctgatg aaggttaaac aggcagtgct 6961 cctagagggt gggttttcca cagcagatgc ggcccgtggg gcaatcaacg cccccatgac 7021 aaaggctctg gactggagcg gaacaaggta ctgggcccct gatgccaggg tcacaacata 7081 caatgcaggc cacttttcca cccctcagtc tttgggggcg ttgacaggaa ggactaattc 7141 tagggtctct gctcctgctc ggagctcccc cagtgcactt tctaatgctc ctactgccac 7201 ttctttgcat tcaaatcaaa ctgtttctac gagactaggt tcttcagctg gttctggtac 7261 cggtgtctcg agtctctcgt cagctgcaag gactaggagt tgggttgagg accaaaacag 7321 aaatttgtca cccttcatga ggggggctct caacacatca tttgtcaccc ctccatctag 7381 tagatcctcc agtcaaagca cagtctcaac cgtgcctaaa gaaattttgg actcctggac 7441 tggcgctttc aacacgcgca ggcagcctct cttcgctcac attcgcaaac gaggggagtc 7501 acgggtgtaa tgtgaaaaga caagattgat tatctttcct ttctttagtg tcttt //