Typing tool
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Typing tool
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Complete norovirus genomes
| X81879 | GII.2 | |
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| GII.P2 |
ORF1: 1..1002
ORF2: 983..2611
ORF3: 2611..3390
LOCUS X81879 3435 bp mRNA linear VRL 26-JUL-2016
DEFINITION Human calicivirus strain Melksham cDNA for orf1, orf2 and orf3.
ACCESSION X81879
VERSION X81879.1
KEYWORDS capsid protein; RNA-dependent RNA polymerase.
SOURCE Human calicivirus strain Melksham
ORGANISM Human calicivirus strain Melksham
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 3435)
AUTHORS Green,S.M., Lambden,P.R., Caul,E.O., Ashley,C.R. and Clarke,I.N.
TITLE Capsid diversity in small round-structured viruses: molecular
characterization of an antigenically distinct human enteric
calicivirus
JOURNAL Virus Res. 37 (3), 271-283 (1995)
PUBMED 8533462
REFERENCE 2 (bases 1 to 3435)
AUTHORS Green,S.M.
TITLE Direct Submission
JOURNAL Submitted (30-JAN-1995) S.M. Green, University of Southampton,
Molecular Microbiology, Level C, South Block, Southampton General
Hospital, Southampton SO16 6YD, UK
FEATURES Location/Qualifiers
source 1..3435
/organism="Human calicivirus strain Melksham"
/mol_type="mRNA"
/strain="Melksham"
/db_xref="taxon:268832"
CDS <1..1002
/note="unnamed protein product; RNA-dependent RNA
polymerase reading frame 1"
/codon_start=1
/protein_id="CAA57461.1"
/db_xref="GOA:Q66292"
/db_xref="HSSP:1KHV"
/db_xref="InterPro:IPR001205"
/db_xref="InterPro:IPR004004"
/db_xref="InterPro:IPR007094"
/db_xref="UniProtKB/TrEMBL:Q66292"
/translation="KIKKRLLWGSDLATMVRCARSFGGLMDELKAHCVTLPIRVGMNM
NEDGPIVFEKHSRYRYHYDADYSRWDSTQQRAVLAAAMEIMVKFSAEPQLAQIVAEDL
LSPSVVDVGDFKISINEGLPSGVPCTSQWNSIAHWLLTLCALSEVTDLSPDIVQANSL
FSFYGDDEIVSTDIKLDPEKLTGKLREYGLKPTRPDKTEGPLIISEDLNGLTFLRRTV
TRDPAGWFGKLDQSSILRQLYWTKGPNHEDPFESMIPHSQRPIQLMSLLGEAALHEPS
FYSKISKLVISELKEGGMDFYVPRQEPMFRWMRFSDLSTWEGDRNLAPSLVNEDGVE"
CDS 983..2611
/codon_start=1
/product="capsid protein"
/protein_id="CAA57462.1"
/db_xref="InterPro:IPR004005"
/db_xref="InterPro:IPR013643"
/db_xref="UniProtKB/TrEMBL:Q66293"
/translation="MKMASNDAAPSTDGAAGLVPESNNEVMALEPVAGAALAAPVTGQ
TNIIDPWIRANFVQAPNGEFTVSPRNAPGEVLLNLELGPELNPYLAHLARMYNGYAGG
MEVQVMLAGNAFTAGKLVFAAVPPHFPVENLSPQKITMFPHVIIDVRTLEPVLLPLPD
VRNSFFHYNQKDDPKMRIVAMLYTPLRSNGSGDDVFTVSCRVLTRPSPDFDFTYLVPP
TVESKTKPFTLPILTLGELSNSRFPVPIDQMYTSPNEVISVQCQNGRCTLDGELQGTT
QLQVSGICAFKGEVTAHLHDNDHLNNVTITNLNGSPFDPSEDIPAPLGVPDFQGRVFG
VISQRDKQNAAGHSEPANRGHDAVVPTYTAQYTPKLGQIQIGTWQTDDLTVNQPVKFT
PVGLNDTEHFNQWVVPRYAGALNLNTNLAPSVAPVFPGERLLFFRSHLPLKGGYGNPA
IDCLLPQEWVQHFYQEAAPSMSEVALVRYINPDTGRALFEAKLHRAGFMTVSSNTSAP
VVVPANGYFRFDSWVNQFYSLAPMGTGNGRRRVQ"
CDS 2611..3390
/note="unnamed protein product"
/codon_start=1
/protein_id="CAA57463.1"
/db_xref="InterPro:IPR004278"
/db_xref="UniProtKB/TrEMBL:Q66294"
/translation="MAGAFVAGLAGDVLSNGLSSLINAGANAINQRAEFDFNQRLQQN
SFNHDKEMLQAQIQATKQLQADMMAIKQGVLTAGGFSPADAARGAVNAPMTQALDWNG
TRYWAPGSMRTTSYSGRFTSTAPVRQADFQHTQNRPSSGSSVSSYATQSSRPTLTTTT
GSSHGTTSSNSTRSTNLSQSTVSRATSRTSEWVRDQNRNLEPYMHGALQTAFVTPPSS
RASDGTVSTVPKGVLDSWTPAFNTRRQPLFAHLRKRGESQA"
ORIGIN
1 aagataaaga agaggttgct ttggggctca gacttggcca ccatggtgcg gtgcgcgcgc
61 tcctttggcg gtttgatgga cgagctcaag gctcactgtg taacactacc gataagggtt
121 ggcatgaata tgaatgaaga tggaccaata gtctttgaga aacactccag atataggtac
181 cattatgatg cagattattc taggtgggat tcaacacagc agagagccgt gctggccgcg
241 gctatggaga tcatggttaa attctcagca gagccacaat tagcccaaat agttgcagag
301 gacctactgt cgcctagcgt ggttgacgtg ggcgacttca aaatttctat caatgaaggg
361 ctaccatcgg gcgtcccttg cacctctcaa tggaattcca ttgcacactg gctcctcacc
421 ctatgtgctc tttctgaagt cacagacctt tctcctgaca ttgtgcaggc caactccctt
481 ttctcctttt atggtgatga tgaaattgtg agcacagaca ttaaattaga cccagaaaag
541 ttgacgggga agttgagaga atatggactc aaacccactc gtccagacaa aactgagggc
601 cctctgatca tcagcgagga cctgaatggc ctgacattcc tgaggagaac cgtcactcgt
661 gaccctgcag ggtggtttgg caagctggac caaagctcca tacttagaca actgtactgg
721 actaaaggtc ccaatcatga ggaccccttt gagtcaatga tcccacactc tcagaggccc
781 atacagctta tgtcactctt aggtgaagca gcactgcatg aaccatcatt ctacagcaag
841 atcagcaagc ttgtgatatc tgaactgaaa gaaggtggaa tggattttta cgtgcccagg
901 caagaaccca tgttcagatg gatgagattc tcagatttga gcacgtggga gggcgatcgc
961 aatcttgctc ccagtcttgt gaatgaagat ggcgtcgaat gacgccgctc catctactga
1021 tggtgcagcc ggcctcgtgc cagaaagtaa taatgaggtc atggctcttg aacccgtggc
1081 tggcgccgcc ttggcagccc cggtcaccgg tcaaacaaat ataatagacc cttggattag
1141 agcaaatttt gtccaggccc ctaatggtga atttacagtt tctccccgca atgcccctgg
1201 tgaagtgcta ttgaatctag agttgggtcc agaattgaat ccttatctgg cacatttagc
1261 aagaatgtat aacgggtatg ccggtgggat ggaggtgcag gtcatgttgg ctgggaacgc
1321 gttcacagcc ggcaaattgg tcttcgccgc tgtgccacct cattttccgg tcgaaaacct
1381 tagtccacag aaaattacca tgttccccca tgtgattata gatgtaagga ctttagaacc
1441 tgttttatta ccactccctg atgttagaaa tagtttcttc cattataacc aaaaagatga
1501 tcccaagatg agaattgtgg ctatgcttta cacccccctt aggtccaatg gttcaggtga
1561 tgacgtgttt acagtctctt gcagggtgtt gaccagacct tcccctgatt ttgattttac
1621 atacctggta ccaccaacag tggaatccaa aacaaaacca ttcacccttc caatcctcac
1681 gcttggggag ctttccaatt ctaggttccc agtgcccata gatcagatgt atactagccc
1741 caatgaagtc atatctgtgc agtgtcagaa tggaaggtgc acgctggatg gggagctcca
1801 aggaacaaca cagctccaag tcagtggcat ttgtgcattc aaaggagaag tgaccgctca
1861 cttgcatgac aatgatcacc taaataatgt caccatcaca aacttgaatg ggtccccttt
1921 tgatccctcc gaggacatcc ccgccccctt gggcgtgcct gacttccagg ggagagtctt
1981 tggtgtcatc tcccaaagag acaaacagaa tgccgctgga cacagtgagc cagcaaacag
2041 gggacacgat gctgtggttc ccacttacac agcacagtac actccaaaat tgggtcagat
2101 tcaaattggc acatggcaga ccgacgacct tacagtcaac caaccagtca aattcacccc
2161 agttggtctc aatgacacag aacattttaa ccagtgggtg gtccctagat acgctggtgc
2221 cttaaacctt aacacaaatc ttgccccctc tgttgctcca gtgtttccag gggagcgcct
2281 gctcttcttc agatcacacc tcccccttaa gggtggctat ggaaatccag ctattgattg
2341 tctactgcca caagagtggg tgcagcattt ttatcaagaa gcagctccct caatgagtga
2401 ggtggccctt gtcagataca tcaatccaga cactggccgg gcgctgtttg aggccaagct
2461 ccacagagct ggtttcatga cagtctcaag caacaccagt gctccggtgg ttgtgcctgc
2521 caacggatac ttcaggtttg actcttgggt gaaccaattt tattctctcg cccccatggg
2581 aactggaaat gggcgtagaa gggttcagta atggctggag cttttgtagc tggtctcgcg
2641 ggggatgtgc tcagcaatgg gcttagttca ttaattaatg caggtgctaa tgcaataaat
2701 cagagagcag aatttgattt taatcagaga ttacagcaaa attcttttaa tcatgataag
2761 gagatgttgc aggctcagat tcaggcaact aagcagctgc aggcagacat gatggctata
2821 aagcaggggg ttctgaccgc tggcggcttt tcccctgctg acgcagccag aggtgctgtg
2881 aacgcgccca tgacacaggc gctggattgg aatggcacaa ggtattgggc accaggctcc
2941 atgaggacta catcttactc tggaaggttc acgtcgaccg ccccagtgag gcaggccgat
3001 ttccaacaca ctcaaaatcg gccttcgagt ggctcttctg tgtcctctta tgccactcaa
3061 tcttcaaggc caactctaac cacaaccaca gggtcctcac atggtacaac ctcatccaac
3121 tcgacccgta gcacaaacct ttcccagtca acggtctcta gggctacatc caggactagt
3181 gagtgggtta gagatcaaaa taggaatttg gaaccctaca tgcatggtgc cttacagaca
3241 gcctttgtca ccccaccttc cagcagggca tctgacggga cagtctcaac cgtccccaaa
3301 ggtgttttgg actcctggac acctgcgttc aacacccgca ggcagccgct ttttgcacac
3361 ctccgtaaga ggggggagtc acaagcttag tgaaaaggtg aaaatttgtt ctaaatgaat
3421 tgaacttgcc tttgc
//