Typing tool
|
|
|
|
|
|
Typing tool
|
Complete norovirus genomes
| U46500 | GII.4 Sydney | |
|
|---|---|---|---|
| GII.P4 Hunter |
ORF1: 1..1443
ORF2: 1424..3043
ORF3: 3043..3849
LOCUS HCU46500 3868 bp mRNA linear VRL 12-JUN-1996
DEFINITION Human calicivirus putative RNA polymerase and capsid mRNA, complete
cds.
ACCESSION U46500
VERSION U46500.1
KEYWORDS .
SOURCE Norovirus isolates
ORGANISM Norovirus isolates
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norovirus norwalkense.
REFERENCE 1 (bases 1 to 3868)
AUTHORS Cauchi,M.R., Doultree,J.C., Marshall,J.A. and Wright,P.J.
TITLE Molecular characterization of Camberwell virus and sequence
variation in ORF3 of small round-structured (Norwalk-like) viruses
JOURNAL J. Med. Virol. 49 (1), 70-76 (1996)
PUBMED 8732863
REFERENCE 2 (bases 1 to 3868)
AUTHORS Wright,P.J., Cauchi,M.R., Doultree,J.C. and Marshall,J.A.
TITLE Direct Submission
JOURNAL Submitted (18-JAN-1996) Peter J. Wright, Microbiology, Monash
University, Wellington Road, Clayton, VIC 3168, Australia
FEATURES Location/Qualifiers
source 1..3868
/organism="Norovirus isolates"
/mol_type="mRNA"
/strain="Camberwell"
/db_xref="taxon:150080"
CDS <1..1443
/note="putative RNA polymerase"
/codon_start=1
/protein_id="AAC54892.1"
/translation="SSTTPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEPR
GKPPKPSVLEAAKKTIINVLEQTIDPPQKWSFTQACASLDKTTSSGHPHHIRKNDCWN
GESFTGKLADQASKANLMFEEGKNMTPVYTGALKDELVKTDKIYGKIKKRLLWGSDLA
TMIRCARAFGGLMDELKAHCVALPVRVGMNMNEDGPIIFERHSRYKYHYDADYSRWDS
TQQRAVLAAALEIMVKFSPEPHLAQIVAEDLLSPSVMDVGDFKISINEGLPSGVPCTS
QWNSIAHWLLTLCALSEVTNLSPDIIQANSLFSFYGDDEIVSTDIKLDPEKLTAKLKE
YGLKPTRPDKTEGPLIISEDLNGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGPN
HEDPSETMIPHSQRPIQLMSLLGEAALHGPAFYSKISKLVIAELKEGGMDFYVPRQEP
MFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
CDS 1424..3043
/note="ORF2"
/codon_start=1
/product="capsid"
/protein_id="AAC54893.1"
/translation="MKMASSDANPSDGSAANLVPEVNNEVMALEPVVGAAIAAPVAGQ
QNIIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLSRMYNGYAGG
FEVQVILAGNAFTAGKVIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD
VRNNFYHYNQSHDSTLKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP
TVESRTKPFTVPILTVEEMSNSRFPIPLEKLYTGPSSAFVVQPQNGRCTTDGVLLGTT
QLSAVNICNFRGDVTHIVGSHDYTMNLASQNWSNYDPTEEIPAPLGTPDFVGKIQGLL
TQTTRADGSTRAHKATVSTGSVHFTPKLGSVQFTTDTNNDFQTGQNTKFTPVGVIQDG
DHHQNEPQQWVLPNYSGRTGHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMNLDC
LLPQEWVLHFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYITVAHTGPFDLVI
PPNGYFRFDSWVNQFYTLAPMGNGTGRRRAL"
CDS 3043..3849
/note="ORF3"
/codon_start=1
/protein_id="AAC54894.1"
/translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA
SFQFSSNLQQASFQHDKEMLQAQIEATQKLQQGLMKVKQAMLLEGGFSTTDAARGAIN
APMTKALDWSGTRYWAPDARTTTYNAGRFSTSQPSGALPGRTTPRVTVPARGPPSTLS
NASTATSVYSNQTVSTRLGSSAGSGTGVSSFPSTVRTRNWVEDQNRNLSPFMRGALNT
SFVTPPSSRSSNQGTVSTVPKEILDSWTGAFNTRRQPLFAHIRKRGESRV"
ORIGIN
1 tcatccacaa caccactccc acctggcacc tatgaaccag cttatcttgg tggtaaggac
61 cccagagtca agggtggccc ttcattgcaa caagttatga gggatcagct gaaaccattt
121 acagagccca ggggcaaacc accaaagcca agtgtcttgg aggccgccaa gaaaaccatc
181 atcaatgtcc ttgaacaaac aattgatccg cctcagaagt ggtcattcac gcaagcttgc
241 gcatccctcg acaagactac ttccagtggc catccgcacc acatacggaa aaacgactgc
301 tggaacgggg aatccttcac aggcaagttg gcagaccagg cttccaaagc caacctgatg
361 ttcgaagagg ggaagaacat gaccccagtt tacacaggtg cgcttaagga tgagttggtc
421 aaaactgaca aaatttatgg taagatcaag aagaggcttc tctggggctc ggacttagcg
481 accatgatcc ggtgcgctcg agcattcgga ggcctaatgg atgaactcaa agcacactgt
541 gttgcacttc ctgtcagagt tggtatgaac atgaatgagg atggccccat catcttcgag
601 aggcattcca ggtacaaata tcactatgat gctgattact ctcgatggga ttcgacacaa
661 cagagagccg tgttagcagc agccctagaa atcatggtta aattctcccc agaaccacac
721 ctggcccaga tagttgcaga agaccttctt tctcctagtg tgatggatgt gggtgacttc
781 aaaatatcaa tcaatgaggg tctcccctct ggggtgccct gtacctccca gtggaactcc
841 atcgcccact ggctcctcac tctctgtgca ctctctgaag ttacaaattt gtcccctgac
901 atcatacagg ctaattccct cttctccttc tatggcgatg atgagattgt cagtacagat
961 ataaagttgg acccagagaa attgacagca aaactcaagg aatacgggct aaaaccaacc
1021 cgccctgaca aaactgaagg accccttatt atttctgaag acttgaatgg cctgaccttc
1081 ctgcggagaa ctgtgacccg cgacccagct ggctggtttg gaaaattgga acagagctca
1141 atacttaggc aaatgtactg gactaggggc cccaaccatg aggacccatc tgaaacaatg
1201 attccacact cccaaagacc catacaatta atgtccctac tgggagaggc cgcactccac
1261 ggcccagcat tctacagcaa aattagcaag ctagtcattg cagagttgaa ggaaggtggc
1321 atggactttt acgtgcccag acaagagcca atgttcagat ggatgagatt ctcagatctg
1381 agcacgtggg agggcgatcg caatctggct cccagttttg tgaatgaaga tggcgtcgag
1441 tgacgccaac ccatctgatg ggtccgcagc caacctcgtc ccagaggtca acaatgaggt
1501 tatggctctg gagcccgttg ttggtgccgc tattgcggca cctgtagcgg gccaacaaaa
1561 tataattgac ccctggatta gaaataattt tgtacaagcc cctggtggag agtttacagt
1621 gtcccctaga aacgctccag gtgagatact atggagcgcg cccttgggcc ctgatttgaa
1681 tccctatctt tctcacttgt ccagaatgta taatggttat gcaggtggtt ttgaagtgca
1741 agtgatcctt gcggggaacg cgttcaccgc cgggaaagtt atatttgcag cagttccacc
1801 aaactttcca actgaaggct taagccccag ccaggttact atgttccccc atataattgt
1861 agatgttaga caactggaac ctgtgttgat tcccctacct gatgtcagga ataatttcta
1921 tcattacaat caatcacatg attctaccct taaattgata gcaatgctgt acacaccact
1981 tagggctaat aatgccgggg atgatgtctt tacagtctct tgtcgagttc tcacgagacc
2041 atcccccgat tttgatttta tattcttggt gccacccaca gttgaatcaa gaactaaacc
2101 attcaccgtc ccaattttaa ccgttgagga aatgtccaat tcaagattcc ccattccttt
2161 ggaaaagctg tatacgggtc ccagcagtgc ttttgttgta caaccacaaa atggcagatg
2221 cacgactgac ggcgtgctct taggcactac ccagctgtca gctgtcaaca tctgcaactt
2281 taggggggat gtcacccata ttgtgggcag ccatgattat acaatgaact tggcttccca
2341 aaattggagc aattatgacc caacagaaga aatcccagcc cccctgggaa caccagattt
2401 tgtggggaag atccaaggtc tgctcaccca aaccacaaga gcagatggct cgacccgtgc
2461 ccacaaagct acagtgagca ctgggagtgt ccacttcact ccaaagctgg gtagtgttca
2521 attcaccact gacacaaaca atgatttcca aactggccaa aacacgaaat tcaccccagt
2581 tggtgtcatc caagacggtg accaccacca gaatgagccc caacaatggg tactcccgaa
2641 ttattcaggt agaactggtc ataatgtgca cctggcccct gccgttgccc ccacttttcc
2701 gggtgagcaa ctccttttct ttagatccac tatgcccggg tgtagcgggt atcccaacat
2761 gaacttggac tgcctactcc cccaggaatg ggtgctgcac ttctaccagg aagcagctcc
2821 agcacaatct gatgtggctc tgctgagatt tgtgaatcca gacacaggta gggttctgtt
2881 tgagtgcaag ctccataagt caggctacat cacagtggcc cacaccggcc cgtttgactt
2941 ggttatcccc cctaatggtt attttagatt tgattcttgg gtcaaccagt tctacacact
3001 tgcccccatg ggaaatggga cggggcgcag gcgtgcatta taatggctgg agctttcttt
3061 gctggattgg catctgatgt ccttggctct ggacttggtt ctctaatcaa tgctggggct
3121 ggggccatca accaaaaagt tgaatttgaa aataacagaa aattgcaaca agcttccttc
3181 caatttagta gcaatctgca acaggcttcc ttccaacatg ataaagagat gctccaagca
3241 caaattgagg ctacccaaaa attgcaacag ggtctgatga aggttaaaca ggcaatgctc
3301 ctagagggtg gattctccac aacagatgca gcccgtgggg caatcaacgc ccccatgaca
3361 aaggctctgg actggagcgg aacaaggtac tgggcccctg atgccaggac cacaacatac
3421 aatgcaggcc gcttttccac ctctcagcct tcgggggcat tgccaggaag aactactcct
3481 agggttaccg tccccgctcg gggtccccct agcacacttt ccaatgcttc tactgctact
3541 tctgtatatt caaatcaaac tgtttcaacg agactaggtt cttcagctgg ttctggcacc
3601 ggtgtctcga gtttcccgtc aactgtaagg actaggaact gggttgagga ccaaaacaga
3661 aatctgtcac ctttcatgag gggggctctc aatacatcat tcgtcacccc accatctagt
3721 agatcctcca accaaggcac agtctcaacc gtgcctaaag aaattttgga ctcctggact
3781 ggcgctttca acacgcgcag gcagcctctc tttgctcaca ttcgtaaacg aggggagtca
3841 cgggtgtaat gtggaaagac aatattga
//