Typing tool
|
Complete norovirus genomes
U46500 | GII.4 Sydney | ||
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GII.P4 US95 |
ORF1: 1..1443 ORF2: 1424..3043 ORF3: 3043..3849LOCUS HCU46500 3868 bp mRNA linear VRL 12-JUN-1996 DEFINITION Human calicivirus putative RNA polymerase and capsid mRNA, complete cds. ACCESSION U46500 VERSION U46500.1 KEYWORDS . SOURCE Norovirus isolates ORGANISM Norovirus isolates Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 3868) AUTHORS Cauchi,M.R., Doultree,J.C., Marshall,J.A. and Wright,P.J. TITLE Molecular characterization of Camberwell virus and sequence variation in ORF3 of small round-structured (Norwalk-like) viruses JOURNAL J. Med. Virol. 49 (1), 70-76 (1996) PUBMED 8732863 REFERENCE 2 (bases 1 to 3868) AUTHORS Wright,P.J., Cauchi,M.R., Doultree,J.C. and Marshall,J.A. TITLE Direct Submission JOURNAL Submitted (18-JAN-1996) Peter J. Wright, Microbiology, Monash University, Wellington Road, Clayton, VIC 3168, Australia FEATURES Location/Qualifiers source 1..3868 /organism="Norovirus isolates" /mol_type="mRNA" /strain="Camberwell" /db_xref="taxon:150080" CDS <1..1443 /note="putative RNA polymerase" /codon_start=1 /protein_id="AAC54892.1" /translation="SSTTPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEPR GKPPKPSVLEAAKKTIINVLEQTIDPPQKWSFTQACASLDKTTSSGHPHHIRKNDCWN GESFTGKLADQASKANLMFEEGKNMTPVYTGALKDELVKTDKIYGKIKKRLLWGSDLA TMIRCARAFGGLMDELKAHCVALPVRVGMNMNEDGPIIFERHSRYKYHYDADYSRWDS TQQRAVLAAALEIMVKFSPEPHLAQIVAEDLLSPSVMDVGDFKISINEGLPSGVPCTS QWNSIAHWLLTLCALSEVTNLSPDIIQANSLFSFYGDDEIVSTDIKLDPEKLTAKLKE YGLKPTRPDKTEGPLIISEDLNGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGPN HEDPSETMIPHSQRPIQLMSLLGEAALHGPAFYSKISKLVIAELKEGGMDFYVPRQEP MFRWMRFSDLSTWEGDRNLAPSFVNEDGVE" CDS 1424..3043 /note="ORF2" /codon_start=1 /product="capsid" /protein_id="AAC54893.1" /translation="MKMASSDANPSDGSAANLVPEVNNEVMALEPVVGAAIAAPVAGQ QNIIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLSRMYNGYAGG FEVQVILAGNAFTAGKVIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD VRNNFYHYNQSHDSTLKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP TVESRTKPFTVPILTVEEMSNSRFPIPLEKLYTGPSSAFVVQPQNGRCTTDGVLLGTT QLSAVNICNFRGDVTHIVGSHDYTMNLASQNWSNYDPTEEIPAPLGTPDFVGKIQGLL TQTTRADGSTRAHKATVSTGSVHFTPKLGSVQFTTDTNNDFQTGQNTKFTPVGVIQDG DHHQNEPQQWVLPNYSGRTGHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMNLDC LLPQEWVLHFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYITVAHTGPFDLVI PPNGYFRFDSWVNQFYTLAPMGNGTGRRRAL" CDS 3043..3849 /note="ORF3" /codon_start=1 /protein_id="AAC54894.1" /translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA SFQFSSNLQQASFQHDKEMLQAQIEATQKLQQGLMKVKQAMLLEGGFSTTDAARGAIN APMTKALDWSGTRYWAPDARTTTYNAGRFSTSQPSGALPGRTTPRVTVPARGPPSTLS NASTATSVYSNQTVSTRLGSSAGSGTGVSSFPSTVRTRNWVEDQNRNLSPFMRGALNT SFVTPPSSRSSNQGTVSTVPKEILDSWTGAFNTRRQPLFAHIRKRGESRV" ORIGIN 1 tcatccacaa caccactccc acctggcacc tatgaaccag cttatcttgg tggtaaggac 61 cccagagtca agggtggccc ttcattgcaa caagttatga gggatcagct gaaaccattt 121 acagagccca ggggcaaacc accaaagcca agtgtcttgg aggccgccaa gaaaaccatc 181 atcaatgtcc ttgaacaaac aattgatccg cctcagaagt ggtcattcac gcaagcttgc 241 gcatccctcg acaagactac ttccagtggc catccgcacc acatacggaa aaacgactgc 301 tggaacgggg aatccttcac aggcaagttg gcagaccagg cttccaaagc caacctgatg 361 ttcgaagagg ggaagaacat gaccccagtt tacacaggtg cgcttaagga tgagttggtc 421 aaaactgaca aaatttatgg taagatcaag aagaggcttc tctggggctc ggacttagcg 481 accatgatcc ggtgcgctcg agcattcgga ggcctaatgg atgaactcaa agcacactgt 541 gttgcacttc ctgtcagagt tggtatgaac atgaatgagg atggccccat catcttcgag 601 aggcattcca ggtacaaata tcactatgat gctgattact ctcgatggga ttcgacacaa 661 cagagagccg tgttagcagc agccctagaa atcatggtta aattctcccc agaaccacac 721 ctggcccaga tagttgcaga agaccttctt tctcctagtg tgatggatgt gggtgacttc 781 aaaatatcaa tcaatgaggg tctcccctct ggggtgccct gtacctccca gtggaactcc 841 atcgcccact ggctcctcac tctctgtgca ctctctgaag ttacaaattt gtcccctgac 901 atcatacagg ctaattccct cttctccttc tatggcgatg atgagattgt cagtacagat 961 ataaagttgg acccagagaa attgacagca aaactcaagg aatacgggct aaaaccaacc 1021 cgccctgaca aaactgaagg accccttatt atttctgaag acttgaatgg cctgaccttc 1081 ctgcggagaa ctgtgacccg cgacccagct ggctggtttg gaaaattgga acagagctca 1141 atacttaggc aaatgtactg gactaggggc cccaaccatg aggacccatc tgaaacaatg 1201 attccacact cccaaagacc catacaatta atgtccctac tgggagaggc cgcactccac 1261 ggcccagcat tctacagcaa aattagcaag ctagtcattg cagagttgaa ggaaggtggc 1321 atggactttt acgtgcccag acaagagcca atgttcagat ggatgagatt ctcagatctg 1381 agcacgtggg agggcgatcg caatctggct cccagttttg tgaatgaaga tggcgtcgag 1441 tgacgccaac ccatctgatg ggtccgcagc caacctcgtc ccagaggtca acaatgaggt 1501 tatggctctg gagcccgttg ttggtgccgc tattgcggca cctgtagcgg gccaacaaaa 1561 tataattgac ccctggatta gaaataattt tgtacaagcc cctggtggag agtttacagt 1621 gtcccctaga aacgctccag gtgagatact atggagcgcg cccttgggcc ctgatttgaa 1681 tccctatctt tctcacttgt ccagaatgta taatggttat gcaggtggtt ttgaagtgca 1741 agtgatcctt gcggggaacg cgttcaccgc cgggaaagtt atatttgcag cagttccacc 1801 aaactttcca actgaaggct taagccccag ccaggttact atgttccccc atataattgt 1861 agatgttaga caactggaac ctgtgttgat tcccctacct gatgtcagga ataatttcta 1921 tcattacaat caatcacatg attctaccct taaattgata gcaatgctgt acacaccact 1981 tagggctaat aatgccgggg atgatgtctt tacagtctct tgtcgagttc tcacgagacc 2041 atcccccgat tttgatttta tattcttggt gccacccaca gttgaatcaa gaactaaacc 2101 attcaccgtc ccaattttaa ccgttgagga aatgtccaat tcaagattcc ccattccttt 2161 ggaaaagctg tatacgggtc ccagcagtgc ttttgttgta caaccacaaa atggcagatg 2221 cacgactgac ggcgtgctct taggcactac ccagctgtca gctgtcaaca tctgcaactt 2281 taggggggat gtcacccata ttgtgggcag ccatgattat acaatgaact tggcttccca 2341 aaattggagc aattatgacc caacagaaga aatcccagcc cccctgggaa caccagattt 2401 tgtggggaag atccaaggtc tgctcaccca aaccacaaga gcagatggct cgacccgtgc 2461 ccacaaagct acagtgagca ctgggagtgt ccacttcact ccaaagctgg gtagtgttca 2521 attcaccact gacacaaaca atgatttcca aactggccaa aacacgaaat tcaccccagt 2581 tggtgtcatc caagacggtg accaccacca gaatgagccc caacaatggg tactcccgaa 2641 ttattcaggt agaactggtc ataatgtgca cctggcccct gccgttgccc ccacttttcc 2701 gggtgagcaa ctccttttct ttagatccac tatgcccggg tgtagcgggt atcccaacat 2761 gaacttggac tgcctactcc cccaggaatg ggtgctgcac ttctaccagg aagcagctcc 2821 agcacaatct gatgtggctc tgctgagatt tgtgaatcca gacacaggta gggttctgtt 2881 tgagtgcaag ctccataagt caggctacat cacagtggcc cacaccggcc cgtttgactt 2941 ggttatcccc cctaatggtt attttagatt tgattcttgg gtcaaccagt tctacacact 3001 tgcccccatg ggaaatggga cggggcgcag gcgtgcatta taatggctgg agctttcttt 3061 gctggattgg catctgatgt ccttggctct ggacttggtt ctctaatcaa tgctggggct 3121 ggggccatca accaaaaagt tgaatttgaa aataacagaa aattgcaaca agcttccttc 3181 caatttagta gcaatctgca acaggcttcc ttccaacatg ataaagagat gctccaagca 3241 caaattgagg ctacccaaaa attgcaacag ggtctgatga aggttaaaca ggcaatgctc 3301 ctagagggtg gattctccac aacagatgca gcccgtgggg caatcaacgc ccccatgaca 3361 aaggctctgg actggagcgg aacaaggtac tgggcccctg atgccaggac cacaacatac 3421 aatgcaggcc gcttttccac ctctcagcct tcgggggcat tgccaggaag aactactcct 3481 agggttaccg tccccgctcg gggtccccct agcacacttt ccaatgcttc tactgctact 3541 tctgtatatt caaatcaaac tgtttcaacg agactaggtt cttcagctgg ttctggcacc 3601 ggtgtctcga gtttcccgtc aactgtaagg actaggaact gggttgagga ccaaaacaga 3661 aatctgtcac ctttcatgag gggggctctc aatacatcat tcgtcacccc accatctagt 3721 agatcctcca accaaggcac agtctcaacc gtgcctaaag aaattttgga ctcctggact 3781 ggcgctttca acacgcgcag gcagcctctc tttgctcaca ttcgtaaacg aggggagtca 3841 cgggtgtaat gtggaaagac aatattga //