Typing tool
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Typing tool
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Complete norovirus genomes
| U22498 | GII.3 | |
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| GII.P3 |
ORF1: 1..887
ORF2: 853..2499
ORF3: 2499..3260
LOCUS HCU22498 3299 bp RNA linear VRL 19-AUG-1996
DEFINITION Human calicivirus strain MX polymerase gene, partial cds, and
capsid protein gene, complete cds.
ACCESSION U22498
VERSION U22498.1
KEYWORDS .
SOURCE Norovirus isolates
ORGANISM Norovirus isolates
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (sites)
AUTHORS Jiang,X., Matson,D.O., Velazquez,F.R., Calva,J.J., Zhong,W.M.,
Hu,J., Ruiz-Palacios,G.M. and Pickering,L.K.
TITLE Study of Norwalk-related viruses in Mexican children
JOURNAL J. Med. Virol. 47 (4), 309-316 (1995)
PUBMED 8636696
REFERENCE 2 (bases 1 to 3299)
AUTHORS Jiang,X.
TITLE Direct Submission
JOURNAL Submitted (13-MAR-1995) Xi Jiang, Eastern Virginia Medical School,
Center For Pediatric Research, 855 West Brambleton Ave, Norfolk, VA
23510-1001, USA
FEATURES Location/Qualifiers
source 1..3299
/organism="Norovirus isolates"
/mol_type="genomic RNA"
/strain="MX"
/host="Homo sapiens"
/sub_species="Snow Mountain-like virus"
/db_xref="taxon:150080"
CDS <1..887
/codon_start=3
/product="polymerase"
/protein_id="AAB06270.1"
/translation="NEDGPIIFEKHSRYRYHYDADYSRWDSTQQRAVLAAALEIMVRF
SAEPQLAQIVAEDLLAPSVVDEGDFKITINEGLPSGVPCTSQRNSTAHWLLTLCALSE
VTGLGPDIIQANSMYSFYGDDEIVSTDIKLDPEKLTAKLKEYGLKPTRPDKTEGPLVI
SEDLNGLTFLHRNVTRDPAGWFGKLEQSSILRQLYWTRGPNHEDPSETMIPHALRPVQ
LMALLGESSLNGPSFYSKVSKLVISELKEGGMDFYVPRQESMFRWMRFSDLSTWEGDR
NLASSFVNEDGVESRCSI"
CDS 853..2499
/codon_start=1
/product="capsid protein"
/protein_id="AAB06271.1"
/translation="MKMASNRAAPSNDGAACLVPEINNEAMALEPVAGAAIAAPLTGQ
QNIIDPWIMNNFVQAPGGEFTVSPRNSPGEVLLNLELGPEINPYLAHLARMYNGYAGG
FEVQVVLAGNAFTAAKIIFAAIPPNFPIDNLSAAQITMCPHVIVDVRQLEPINLPMPD
VRNNFFHYNQGSDSRLRLIAMLYTPLRANNSGDDVFTVSCRVLTRPSPDFLFNFLVPP
TVESKTKPFTLPILTISEMSNSRFPVPIDSLHTSPTENIVVQCQNGRVTLDGELMGTT
QLLPSQICAFRGTLTGSTSRASDQADTPTPRLFNHHWHIQLDNLNGTPYDPAEDIPAP
LGTPDFRGKVFGVAGQRNPDSTTRAHEAKVDTTSGRFTPKLGSLEITTESDDLDLSQP
TKFTPVGIGVDNRAEFQQWSLPDYSGQFTHNMNLAPAVAPNFPGEQLLFFRSQLPSSG
GRSNGVLDCLVPQEWVQHFYQESAPAQTQVALVRYVNPDTGRVLFEAKLHKLGFMTVA
KNGDSPITVPPNGYFRFESWVNPFYTLAPMGTGNGRRRIQ"
CDS 2499..3260
/codon_start=1
/product="unknown"
/protein_id="AAB06272.1"
/translation="MAGAFIAGLAGDMLTNTVGSLVNAGANAINQKVDFENNKYLRNA
SFNHDKEMLNAQIAATKRLQADMIAIKQPVLTLAAFPLLMQHVAINAPMTKVLDWSGT
RYWAPNATSTTSMSGGFTSQVVHRTTPNFKTNQAPEFTPSSGSSVRSSSTQLTNLSSH
SSGRSRSSGSTVVSSLPSSSRTRDRVNQQNLNLEPYMPGSLRIAFVTPPSSTASSSGT
VSTVPKNVLDSWTSRLTGADSRCLIPLRRRGESNV"
misc_feature 3261..3299
/note="3' terminal non-coding region"
ORIGIN
1 tgaatgaaga tggtcccata atatttgaga aacattccag atacagatac cactacgacg
61 cagattactc ccgctgggac tccacgcagc agcgggcagt gttggcagca gcacttgaaa
121 tcatggtgag gttctctgct gaaccacagc tagcacaaat agtagctgaa gatctgctag
181 caccaagtgt ggttgatgag ggtgacttca agatcaccat taacgaaggc ctaccttctg
241 gtgtgccttg cacctcacag cggaactcca ccgcccactg gttgcttact ctgtgtgccc
301 tttctgaagt gacaggacta ggccccgaca tcatacaagc taattctatg tactctttct
361 atggtgatga tgagatagtg agtactgaca taaaattgga cccagagaaa ctgactgcaa
421 aactcaaaga gtacggcctc aaacccactc ggcccgacaa aaccgaaggg ccgctggtga
481 tcagtgaaga cttgaatggt ttaacgttcc tccaccgaaa cgtcacccgt gacccagcag
541 gttggtttgg aaagctggag caaagttcca tcctcaggca gctatactgg acaagaggac
601 ctaaccatga agaccccagt gaaaccatga taccacatgc gctgagaccc gtgcagctca
661 tggcactact gggagaatcc tccctaaatg gaccctcatt ttacagcaag gtcagcaagc
721 tggttatatc tgaacttaag gagggaggaa tggattttta tgtgcccaga caagagtcaa
781 tgttcaggtg gatgaggttc tcagatctaa gcacatggga gggcgatcgc aatctggcct
841 ccagttttgt gaatgaagat ggcgtcgaat cgcgctgctc catctaatga tggtgccgcc
901 tgcctcgtcc cagagatcaa caatgaggca atggcgctag agccagtggc gggtgcagcg
961 atagcagcgc ccctcactgg ccagcaaaat ataattgatc cctggattat gaataatttt
1021 gtgcaagcac ctggtggtga gtttacagtg tcacccagga attcccctgg tgaagtgctt
1081 cttaatttgg aattaggtcc agaaataaat ccttatttgg ctcatcttgc tagaatgtac
1141 aatggttatg caggtggatt tgaagtgcaa gtggtcctgg ctggaaatgc gtttacagca
1201 gcaaaaatta tctttgcagc tataccccct aacttcccta ttgacaatct gagcgcggca
1261 cagatcacaa tgtgcccgca tgtgattgtg gatgtcaggc agttggaacc aatcaatctt
1321 ccgatgcctg atgtccgcaa caatttcttt cattataatc aaggttctga ttcaagatta
1381 cgcttaattg caatgctgta tacacctctt agggcaaata attctggaga tgatgttttc
1441 actgtgtctt gtagggtgtt aactaggcct agccctgatt tcttattcaa ttttcttgtc
1501 ccacccactg tggaatcaaa gacaaaacct tttaccctcc ccattttaac catctctgaa
1561 atgtctaatt ccaggtttcc ggtgccaatt gactctctgc acaccagccc aactgagaat
1621 atagttgtcc agtgccaaaa tgggcgcgtc actcttgacg gtgagttgat gggcaccacc
1681 caactcttac cgagccaaat atgtgctttc aggggcacac tcactggatc aacaagcagg
1741 gccagtgacc aagccgacac accaacccct aggctattca accatcattg gcacatacaa
1801 ttggataatc taaatggaac tccctacgac cctgcagagg acataccagc tcctttgggc
1861 acaccagact tccggggcaa ggtctttggc gtagccggcc agagaaaccc cgacagcaca
1921 acaagggcac atgaagcaaa agtggacaca acatctggcc gcttcacccc aaaattgggc
1981 tccttagaaa taaccactga atctgatgac cttgacctaa gccagccaac aaaattcacc
2041 ccagttggca ttggagttga caatagggca gaatttcagc aatggtcctt acctgactat
2101 tccggtcagt ttactcacaa catgaacttg gccccagctg tcgcccccaa ttttcctggt
2161 gaacagctac ttttcttccg atcacagctg ccatcctctg gtgggcggtc taacggggtt
2221 ctagactgcc tggtccccca ggaatgggtt caacactttt accaagaatc agcccccgcc
2281 caaacacagg tggccctggt taggtatgtc aaccctgaca ctggtagagt gctatttgag
2341 gccaagctac acaaattggg ttttatgact gtagcaaaga atggtgactc cccaataact
2401 gtccctccaa atggttattt tagatttgaa tcttgggtta acccctttta cacacttgcc
2461 cccatgggaa ctggaaacgg gcgtagaagg attcaataat ggccggagct tttatagcag
2521 gattggctgg ggacatgctc acaaacactg tggggtcttt ggttaatgca ggggctaatg
2581 ctatcaatca aaaagttgat tttgaaaata ataaatattt gcgaaatgct tcttttaatc
2641 atgataagga gatgctaaat gcacaaattg cggcaacaaa gaggctgcag gctgacatga
2701 ttgcaatcaa acaacccgtc ttgacgctgg cggcttttcc cctactgatg cagcacgtgg
2761 caattaatgc cccaatgaca aaagttttag attggagtgg aacaaggtac tgggcaccaa
2821 acgccacctc cacaacttca atgtcaggtg gcttcacaag ccaagttgtg cacagaacca
2881 caccaaattt caaaacgaac caggcccccg aattcacacc cagcagtggg tcttcagtga
2941 gatcaagctc aacccaactc accaacttga gctcacactc atctggtcgg tcccgatcta
3001 gcgggtctac ggttgtcagc tcgctgccgt cctccagtag gactagggat cgggtcaatc
3061 aacagaatct caatttggaa ccatacatgc ctggatctct caggatagct tttgtcactc
3121 caccatctag cacagcctct agttcaggca cagtctcaac cgtgcccaaa aatgttttgg
3181 actcctggac atctcgttta acaggcgcag acagccgctg tttgataccc cttcgtagaa
3241 ggggggagtc aaatgtttag tgaaaagatt attcctaaat ttgatttaga atcttttac
//