Typing tool
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Typing tool
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Complete norovirus genomes
| U04469 | GI.3 | |
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| GI.P10 |
ORF1: 1..816
ORF2: 800..2434
ORF3: 2434..2916
LOCUS DSU04469 2916 bp RNA linear VRL 26-JUL-2016
DEFINITION Desert Shield virus DSV395 polymerase gene, partial cds, and capsid
protein gene, complete cds.
ACCESSION U04469
VERSION U04469.1
KEYWORDS .
SOURCE Desert Shield virus
ORGANISM Desert Shield virus
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 2916)
AUTHORS Lew,J.F., Kapikian,A.Z., Jiang,X., Estes,M.K. and Green,K.Y.
TITLE Molecular characterization and expression of the capsid protein of
a Norwalk-like virus recovered from a Desert Shield troop with
gastroenteritis
JOURNAL Virology 200 (1), 319-325 (1994)
PUBMED 8128635
REFERENCE 2 (bases 1 to 2916)
AUTHORS Lew,J.
TITLE Direct Submission
JOURNAL Submitted (17-DEC-1993) Judy Lew, Epidemiology Section, LID, NIAID,
National Institutes of Health, 9000 Rockville Pike, Blg 7, Rm 129,
Bethesda, MD 20892, USA
FEATURES Location/Qualifiers
source 1..2916
/organism="Desert Shield virus"
/mol_type="genomic RNA"
/strain="DSV395"
/db_xref="taxon:33755"
CDS <1..816
/codon_start=1
/product="polymerase"
/protein_id="AAA16284.1"
/translation="FDADYTAWDSTQNREIMMESFNIMCKLTANPSLAAVVAQDLLSP
SEMDVGDYVISVKDGLPSGFPCTSQVNSINHWILTLCALSEVTGLSPDVLQSQSYFSF
YGDDEIVSTDVEFDPIKLTQVLKEYGLKPTRPDKTDGPIVVKQQVDGLVFLRRTISKD
AIGYQGRLDRNSIERQLWWTRGPNHDDPFETLVPHPQRKVQLISLLGEAALHGEKFYR
KIASRVIQEVKEGGLEIYIPGWQAMFRWMRFHDLSMWTGDRDLLPDYVNDDGV"
CDS 800..2434
/codon_start=1
/product="capsid protein"
/protein_id="AAA16285.1"
/translation="MMMASKDAPTNMDGTSGAGQLVPEANTAEPISMEPVAGAATAAA
TAGQVNMIDPWIMSNYVQAPQGEFTISPNNTPGDILFDLQLGPHLNPFLSHLAQMYNG
WVGNMRVKVLLAGNAFTAGKIIISCIPPGFAAQNISIAQATMFPHVIADVRVLEPIEV
PLEDVRNVLFHNNDSSPTMRLVCMLYTPLRASGSSSGTDPFVIAGRVLTCPSPDFSFL
FLVPPNVEQKTKPFSVPNLPLNTLSNSRVPSLINAMMISRDHGQMVQFQNGRVTLDGQ
LQGTTPTSLSQLCKIRGKVFHASGGNGLNLTELDGSAYHAFESPAPIGFPDIGDCDWH
MSATATNNFTGSSNEYQILIKQESAFAPHLGHVQADNLSAGANTDLIVSLSWISPVSD
QHRHDVDPWVIPRYGSSLTEAAQLAPPIYPPGFGEAIVFFMSDFPVVSGVNGMRIPCT
LPQEYVAHFVNEQAPTRGEAALLHYVDPDTHRNLGEFKMYPEGFMTCVPNSSGSGPQT
LPINGVFTFVSWVSRFYQLKPVGTAGPARRLGIRRS"
CDS 2434..>2916
/codon_start=1
/product="unknown"
/protein_id="AAA16286.1"
/translation="MAQAIFGAIAATAAGSPSGAGIQAGTEAALQHQRFQQDLTLQSN
SFKHDKEMIGLQVGASTALLQNSLNTRYNLLTQAGMSTTDAARAVVGAPTTRVVDWNG
TRIAAPMSSATTLRSGGFMTVPTIYRGSKTNSQLSSGFSNANYMPSSVSRTSEWVSSQ
N"
ORIGIN
1 tttgatgctg attacacggc ctgggattcc actcaaaaca gggaaatcat gatggagtcc
61 tttaacatca tgtgtaaact cactgccaac ccttccctgg ctgcggtagt ggcacaagac
121 ttactttctc cttctgaaat ggatgttgga gattatgtaa tcagtgtgaa agacggcctg
181 ccatcaggct tcccgtgtac ctcacaagtc aacagcataa atcactggat tctcaccctg
241 tgtgcattgt cagaagtcac cgggctctcc ccagatgtgt tgcagtcaca gtcgtatttt
301 tccttctatg gggatgatga gatagtctcc acagatgttg aatttgaccc aattaaattg
361 acacaagtgc tcaaagaata tggtctaaaa cccacaagac ccgacaaaac agacggcccc
421 atagtggtca aacaacaagt ggatggcctt gtctttcttc gacgaactat ctcaaaagat
481 gccattggtt atcaaggtcg tctcgaccga aactccattg agaggcagct ttggtggacg
541 cgtggtccca atcacgatga tccatttgag accttggttc cacatccgca gagaaaagtt
601 cagctgatat ctctgcttgg tgaggctgct ctccatggtg agaaattcta cagaaagata
661 gcaagcagag tcatccagga agttaaagaa ggggggttag aaatttacat ccctgggtgg
721 caggccatgt tccgctggat gcgcttccat gatctgagca tgtggacagg ggatcgcgat
781 ctcctgcccg attatgtaaa tgatgatggc gtctaaggac gccccaacaa acatggatgg
841 caccagtggt gccggccagc tggtaccaga ggcaaacaca gctgagccta tttcaatgga
901 gccagtggct ggggctgcga cagcagccgc aactgctgga caagtaaata tgattgaccc
961 ctggataatg agtaattatg tacaagctcc tcaaggagaa tttaccatat cgcccaacaa
1021 tacacccggt gacattttat ttgacctgca attgggccca cacctcaatc ctttcttgtc
1081 ccatttagct caaatgtaca atggttgggt tggaaatatg agagtgaagg tgcttttggc
1141 tggtaatgct tttacagctg ggaaaattat aattagttgc ataccccctg gctttgctgc
1201 gcaaaatatt tccatagctc aagctacaat gttcccccat gtcattgcag atgttagggt
1261 gcttgaacct atagaggtcc ctcttgaaga tgttagaaat gtgcttttcc acaataatga
1321 tagttccccc actatgagat tggtctgcat gttgtataca cctcttaggg ctagtggtag
1381 ttcttcaggc actgacccat ttgtcattgc aggaagggtc ctgacttgcc cgagcccaga
1441 ttttagtttc ttatttcttg tccccccgaa tgtagaacag aaaactaagc ccttttctgt
1501 gcccaacttg ccactaaata cactctctaa ctcaagggtt ccttcactca tcaatgctat
1561 gatgatttct agagaccatg ggcagatggt gcagttccaa aatggcagag tcacgcttga
1621 tggccagttg cagggtacaa cccctacttc actgagccag ctatgcaaga ttagagggaa
1681 agtcttccat gccagtgggg gcaatggtct gaatctgact gaattagatg gttctgctta
1741 tcatgctttt gaaagtcctg ctccaattgg gtttccggac atcggtgact gtgactggca
1801 catgagcgcc acagccacta acaatttcac tgggtccagc aatgaatatc aaatactcat
1861 taaacaagaa tcagcatttg ctccccacct tggccatgtg caggctgata atctgtcagc
1921 aggcgccaac actgatctta tagtgtcctt gagttggata tcccctgttt cagaccaaca
1981 taggcatgac gtggatccat gggtcatacc acgttatggt tcttccctca ctgaagctgc
2041 ccaattggcc ccgcccattt accctcctgg ctttggtgaa gctatagtgt tctttatgtc
2101 tgactttcca gtggtgtcag gtgttaatgg tatgaggatt ccatgcacac tacctcagga
2161 atatgtggct cattttgtaa acgagcaggc tcccactcga ggtgaagcag ctcttttgca
2221 ttatgttgat cctgacactc acagaaacct aggtgagttt aaaatgtatc ctgagggttt
2281 catgacctgt gtgcccaatt ccagtggatc tggtcctcaa accttaccta ttaatggagt
2341 ctttaccttt gtttcttggg tttctcgttt ctatcaatta aagcctgtgg gaactgctgg
2401 tccagcacgt aggcttggca tcagaagatc ataatggctc aagctatctt tggagctatt
2461 gctgccactg ccgctggtag cccgtcgggg gctggtatcc aagctggaac tgaggctgct
2521 ctccagcatc agcggtttca acaggatctt accttacaaa gtaattcttt taagcatgat
2581 aaagaaatga ttgggcttca ggtaggtgcc tctacagcat tattgcaaaa tagtttgaac
2641 actaggtaca atttattaac acaggcaggc atgtcaacaa ctgatgcagc cagggctgtg
2701 gttggtgcgc caactacacg agtggtagac tggaatggca ccagaattgc agcccctatg
2761 tcctctgcca ccactttgag atcaggtggc ttcatgacag taccaacaat ttacagaggc
2821 tctaagacca attcacaatt gtcaagtggt ttttctaatg ctaattatat gcctagtagt
2881 gtatctagaa cttctgaatg ggtttcttct caaaat
//