Typing tool
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Typing tool
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Complete norovirus genomes
| U02030 | GII.3 | |
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| GII.P3 |
ORF1: 1..870
ORF2: 851..2497
ORF3: 2497..2844
LOCUS U02030 2844 bp RNA linear VRL 06-MAY-2002
DEFINITION Minireovirus TV24 polymerase gene, partial cds; capsid protein
gene, complete cds; and unknown gene.
ACCESSION U02030
VERSION U02030.1
KEYWORDS .
SOURCE Minireovirus
ORGANISM Minireovirus
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus.
REFERENCE 1 (bases 1 to 2844)
AUTHORS Lew,J.F., Petric,M., Kapikian,A.Z., Jiang,X., Estes,M.K. and
Green,K.Y.
TITLE Identification of minireovirus as a Norwalk-like virus in pediatric
patients with gastroenteritis
JOURNAL J. Virol. 68 (5), 3391-3396 (1994)
PUBMED 8151799
REFERENCE 2 (bases 1 to 2844)
AUTHORS Lew,J.F.
TITLE Direct Submission
JOURNAL Submitted (22-SEP-1993) Laboratory of Infectious Diseases, NIAID,
National Institutes of Health, 9000 Rockville Pike, Bldg. 7, Rm
129, Bethesda, MD 20892, USA
FEATURES Location/Qualifiers
source 1..2844
/organism="Minireovirus"
/mol_type="genomic RNA"
/strain="TV24"
/db_xref="taxon:194422"
/note="author uses `Toronto virus' as organism synonym"
CDS <1..870
/codon_start=1
/product="polymerase"
/protein_id="AAA18929.1"
/translation="NEDGPIIFEKHSRYRYHYDADYSRWDSTQQRAVLAAALEIMVRF
SAEPQLAQIVAEDLLAPSVVDVGDFKITINEGLPSGVPCTSQWNSIAHWLLTLCALSE
VTGLGPDIIQANSMYSFYGDDEIVSTDIKLDPEKLTAKLKEYGLKPTRPDKTEGPLVI
SEDLNGLTFLRRTVTRDPAGWFGKLEQSSILRQLYWTRGPNHEDPSETMIPHAQRPVQ
LMALLGESSLHGPSFYSKVSKLVISELKEGGMDFYVPRQESMFRWMRFSDLSTWEGDR
NLAPSFVNEDGVE"
CDS 851..2497
/codon_start=1
/product="capsid protein"
/protein_id="AAA18930.1"
/translation="MKMASNDAAPSNDGAACLVPEINNEAMALEPVAGSAIAAPLTGQ
QNIIDPWIMNNFVQAPGGEFTVSPRNSPGEVLLNLELGPEINPYLAHLARMYNGYAGG
FEVQVVLAGNAFTAGKIIFAAIPPNFPIDNLSAAQITMCPHVIVDVRQLEPINLPMPD
VRNNFFHYNQGSDSRLRLIAMLYTPLRANNSGDDVFTVSCRVLTRPSPDFSFNFLVPP
TVESKTKPFTLPILTISEMSNSRFPVPIDSLHTSPTENIVVQCQNGRVTLDGELMGTT
QLLPSQICAFRGTLTRSTSRASDQADTPTPRLFNYYWHIQLDNLNGTPYDPAEDIPAP
LGTPDFRGKVFGVASQRNPDSTTRAHEAKVDTTSGRFTPKLGSLEITTESDDFDPNQP
TKFTPVGVGVDNEAEFQQWSLPNYSGQFTHNMNLAPAVAPNFPGEQLLFFRSQLPSSG
GRSNGVLDCLVPQEWVQHFYQESAPAQTQVALVRYVNPDTGRVLFEAKLHKLGFMTIA
KNGDSPITVPPNGYFRFESWVNPFYTLAPMGTGNGRRRIQ"
CDS 2497..>2844
/codon_start=1
/product="unknown"
/protein_id="AAA18931.1"
/translation="MAGAFIAGLAGDMLTNTVGSLVNAGANAINQKVDFENNKYLQNA
SFNHDKEMLNAQIEATKRLQADIIAIKQGVLTLAAFPLLMQHVAINAPMTKVLDWSGT
RYWAPNATSTTSMS"
ORIGIN
1 aatgaagatg gtcccataat atttgagaaa cattccagat acagatacca ctatgatgca
61 gattactccc gctgggactc cacgcagcag cgggcagtgc tggcagcagc acttgaaatc
121 atggtgaggt tctctgctga accacagcta gcacaaatag tagctgaaga cctgctagca
181 ccaagtgtgg ttgatgtggg tgacttcaag atcaccatta atgaaggcct accttctggt
241 gtgccttgca cctcacagtg gaactccatt gcccactggt tgcttactct gtgtgccctt
301 tctgaagtta caggactagg ccccgacatc atacaagcta attctatgta ctctttctat
361 ggtgatgatg agatagtgag tactgacata aaattggacc cagagaaact gactgcaaaa
421 ctcaaagagt acggcctcaa acccactcgg cccgacaaaa ccgaagggcc gctggtgatc
481 agtgaagact tgaatggttt aacgttcctc cgccgaacgg tcacccgtga cccagcaggt
541 tggtttggaa agctggagca aagttccatc ctcaggcagc tatactggac aagaggacct
601 aaccatgaag accccagtga aaccatgata ccacatgcgc agagacccgt gcagctcatg
661 gcactactgg gagagtcctc cctacatgga ccctcatttt acagcaaggt cagcaagctg
721 gttatatctg aacttaagga gggaggaatg gatttttatg tgcccagaca agagtcaatg
781 ttcaggtgga tgaggttctc agatctaagc acatgggagg gcgatcgcaa tctggccccc
841 agttttgtga atgaagatgg cgtcgaatga cgctgctcca tctaatgatg gtgccgcctg
901 cctcgtccca gagatcaaca atgaggcaat ggcgctagag ccagtggccg gttcagcgat
961 agcagctccc ctcactggcc agcaaaatat aattgatccc tggattatga ataattttgt
1021 acaagcacct ggtggtgagt ttacagtgtc acccaggaat tcccctggtg aagtgcttct
1081 taacttggag ttaggtccag aaataaatcc ttatttggct catctcgcta gaatgtacaa
1141 tggttatgca ggtggatttg aagtgcaagt ggtcctagct ggaaatgcgt ttacagcagg
1201 aaagattatc tttgcagcta taccccctaa cttccctatt gacaatctga gcgcggcaca
1261 gatcacaatg tgcccgcatg tgattgtgga tgtcaggcag ttggaaccaa tcaatctccc
1321 gatgcctgat gtccgcaaca atttctttca ttacaatcaa ggttctgatt caagattacg
1381 tttgattgca atgctgtata cacctcttag ggcaaataat tctggagatg atgttttcac
1441 tgtgtcttgc agggtgttaa ctaggcctag ccctgatttc tcattcaatt ttcttgtccc
1501 acccactgtg gaatcaaaga caaaaccttt caccctcccc attttaacca tctctgaaat
1561 gtctaattcc aggtttccgg tgccaattga ctctctgcac accagcccaa ctgagaatat
1621 agttgtccag tgccaaaatg ggcgcgtcac tcttgacggt gagttgatgg gcaccaccca
1681 actcttaccg agccaaatat gtgctttcag gggcacactc actagatcaa caagcagggc
1741 cagtgaccaa gccgacacac caacccctag gctattcaac tattattggc acatacaatt
1801 ggataatctg aatggaactc cctatgaccc tgcagaggac ataccagccc ctttgggcac
1861 accagacttc cggggcaagg tcttcggcgt agccagccag agaaaccccg acagcacaac
1921 aagggcacat gaagcaaaag tggacacaac atctggccgc ttcaccccaa aattgggctc
1981 cctagaaata accactgaat ctgatgactt tgacccaaac cagccaacaa agttcacccc
2041 agttggcgtt ggagttgaca atgaggcaga atttcagcaa tggtccttac ccaactattc
2101 tggtcagttt actcataata tgaacttagc cccagctgtc gcccccaatt ttcctggtga
2161 acagctactt ttcttccgat cacagctgcc atcctctggt gggcggtcta acggggttct
2221 ggactgcctg gtcccccagg aatgggttca acacttttac caagaatcag cccccgccca
2281 aacacaggtg gccctggtta ggtatgtcaa ccctgacact ggtagagtgc tatttgaggc
2341 caagctacac aaattgggtt ttatgactat agcaaagaat ggtgactccc caataactgt
2401 ccctccaaat ggatatttta gatttgaatc ttgggttaac cccttttaca cacttgcccc
2461 catgggaact ggaaacgggc gtagaaggat tcaataatgg ctggagcttt tatagcagga
2521 ttggcaggtg acatgctcac aaacactgtg gggtctttgg ttaatgcagg ggctaatgct
2581 atcaatcaaa aagttgattt tgaaaataat aagtatttgc aaaatgcttc ttttaatcat
2641 gataaggaga tgttaaatgc acaaattgag gcaacaaaga ggctgcaggc tgacatcatt
2701 gcaatcaaac aaggggtctt gacgctggcg gcttttcccc tactgatgca gcacgtggca
2761 attaatgccc caatgacaaa agttttagat tggagtggaa caaggtactg ggcaccaaac
2821 gccacctcca caacttcaat gtca
//