Typing tool
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Typing tool
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Complete norovirus genomes
| PP423020 | GII.17 | |
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| GII.P17 |
ORF1: 1..5101
ORF2: 5082..6704
ORF3: 6704..7483
LOCUS PP423020 7487 bp RNA linear VRL 08-MAR-2024
DEFINITION Norovirus GII isolate 22040226 nonstructural polyprotein (ORF1)
gene, partial cds; and VP1 (ORF2) and VP2 (ORF3) genes, complete
cds.
ACCESSION PP423020
VERSION PP423020.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norovirus norwalkense.
REFERENCE 1 (bases 1 to 7487)
AUTHORS Tao,L., Wang,X. and Ding,J.
TITLE Direct Submission
JOURNAL Submitted (03-MAR-2024) Department of Microbiology Laboratary,
Nanjing Municipal Center for Disease Control and Prevention
affiliated to Nanjing Medical University, Zizhulin No. 2, Nanjing,
Jiangsu 210003, China
COMMENT ##Assembly-Data-START##
Assembly Method :: BWA v. 0.7.17-r1188
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7487
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="22040226"
/isolation_source="stool"
/host="Homo sapiens"
/db_xref="taxon:122929"
/geo_loc_name="China"
/collection_date="02-Apr-2022"
/note="genotype: GII.17[P17]"
gene <1..5101
/gene="ORF1"
CDS <1..5101
/gene="ORF1"
/codon_start=2
/product="nonstructural polyprotein"
/protein_id="WWQ69705.1"
/translation="ASNDASAAVAGKNNNNDKEKSSSDSLFANMSVTFKKALGARSKQ
PPPGETKQIQKPPRPPTPELVKRIPPPPPNGEDEPGIVYKVGEGVSGLPDLTTVVQPD
AQNTAYSVPPLSQREVGEAKEPLPGSILEMWDGEIYHYGLYVERGHVLGVHKPPAAIS
LAKIEITPLSLYWRVVYTPQYLIDPGTLKNLSGETFPYTAFDNNCYAFCCWVLDLNDS
WLSRRMIQRTTGFFKPYQDWNRKPLPTMDEPKIKKAANAVLCALSSLFTRPIKDIIGK
LRPLNVLNILATCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYEMQGPED
LAVELVPVVMGGIGLVLGFTKEKIGKMLSSAATTLRACKDLGSYGLEILKLVMKWFFP
KKEEANELAMVRAIEDAVLDLEAIENNHMTILLKDKDSLATYMRTLDLEEEKARKLST
KSASPDIVGTINALLARIAAARSLVHKAKEELSSRQRPVVVMISGRPGIGKTHLAREL
AKKVASTLSGDQRIGLVPRNGVDHWDAYKGERVVLWDDYGMSNPIQDALRLQELADTC
PLTLNCDRIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYADAPDIEK
AKRDFPGQPDMWKDHFRPDFSHIKLQLAPQGGFDKNGNTPHGKGVVKSLTIGSLIARA
SGLLHERMDEFELQGSGLPTFNFDRNKVAAFRQLAAENKYGLMDTLRVGNQLKSVKTL
DELKQAIKNISIKKCQIVYNGCTYTMESDGKGKVVVEKVQNATVQTNNELVGALHHLR
SARIRYYVKCFQEAIYSLLQIAGAAFVTSRIVRRMNISNLWSKPPIEEGDEPEDRGGC
PKPRDEDDLTIDSRDIKVEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERNG
KYSIEEYLQDRDRYYEELAIAKATEEDFCEEEEIKIRQRIFRPTRKQRKEERATLGLV
TGSEIRKRNPDDFKPKGKLWADDNRSVDYNERIDFEAPPSVWSRIVNFGTGWGFWVSP
SLFITSTHVIPKGITEAFGVPINQIQIHKSGEFCRLRFPKPIRPDVSGMILEEGAPEG
TVVSILIKRTTGELMPLAVRMGTHATMKIQGRTVGGQMGMLLTGSNAKGMDLGTTPGD
CGCPYIYKRGNDLVVIGVHTAAARGGNTVICATQGSEGEATLEGGDNKGTYCGAPILG
PGNAPKLSTKTKFWRSSNAPLPPGTYEPAYLGGRDPRVKGGPSLQQVMRDQLKPFTEP
RGKPPNPNVLESAKKTIINVLEQTIDPPQKWSYAQACASLDKTTSSGYPHHVRKNDYW
SGESFTGKLADQASKANLMYEEGKHMQPVYTAALKDELVKTDKIYGKIKKRLLWGSDL
STMIRCARAFGGLMDEFKANCITLPIRVGMNMNEDGPIIFEKHSRYRYHYDADYSRWD
STQQRAVLEAALEIMVRFSAEPQLAQIVAEDLLSPSVVDVGDFKIAINEGLPSGVPCT
SQWNSIAHWLLTLCALSEVTGLGPDIIQANSMYSFYGDDEIVSTDIKLDSEKLTAKLK
EYGLKPTRPDKTEGPLVISEDLNGLTFLRRTVTRDPAGWFGKLDQNSILRQLYWTRGP
NHEDPSETMIPHAQRPVQLMALLGESSLHGPSFYSKVSKLVISELKEGGMDFYVPRQE
SMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
mat_peptide <1..991
/gene="ORF1"
/product="p48"
mat_peptide 992..2089
/gene="ORF1"
/product="NTPase"
mat_peptide 2090..2626
/gene="ORF1"
/product="p22"
mat_peptide 2627..3025
/gene="ORF1"
/product="VPg"
mat_peptide 3026..3568
/gene="ORF1"
/product="Pro"
mat_peptide 3569..5098
/gene="ORF1"
/product="RdRp"
gene 5082..6704
/gene="ORF2"
CDS 5082..6704
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="WWQ69706.1"
/translation="MKMASNDAAPSNDGAAGLVPEGNNETLPLEPVAGAAIAAPVTGQ
NNIIDPWIRTNFVQAPNGEFTVSPRNSPGEILLNLELGPDLNPYLAHLSRMYNGYAGG
VEVQVLLAGNAFTAGKILFAAVPPNFPVEFLSPAQITMLPHLIVDVRTLEPIMIPLPD
VRNTFFHYSNQPNSRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPTPDFEFTYLVPP
SVESKTKPFSLPILTLSELTNSRFPVPIDSLFTAQNNVLQVQCQNGRCTLDGELQGTT
QLLPTGICAFRGRVTAQINQRDRWHMQLQNLNGATYDPTDDVPAPLGTPDFKGVVFGM
VSQRNVGNDAPGSTRAQQAWVSTYSPQFVPKLGSVNLRISNNDDFQFQPTKFTPVGIN
DDDDDHPFRQWELPNYSGELTLNMNLAPPVAPNFPGEQLLFFRSFVPCSGGYNQGIID
CLIPQEWIQHFYQESAPSQSDVALIRYVNPDTGRTLFEAKLHRSGYITVAHSGDYPLV
VPANGHFRFDSWVNQFYSLAPMGTGNGRRRAQ"
gene 6704..7483
/gene="ORF3"
CDS 6704..7483
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="WWQ69707.1"
/translation="MAGAFIAGLAGDMLTSSVGSLVNAGANAINQKIDFENNKQLQSA
SFQHDKEMLQAQVRATKQLQSEMIALKQGVLAAGGFSPTDAARGSIGAPMTKVLDWSG
TRYWAPNSTKTTGYSGQFTSSLVHMSSPTAPQSKPAKPRSLAPSSSSSSVYSMYTQST
HLTSGSPSNASSASTKLTNLSSGSSQNRIAEWVNQQRSLSPFMSGALNISHVTPPSSR
ASSSGTVSTVPKEVLDSWTSAFNTHRQPLFAHLRVRGESRV"
ORIGIN
1 ggcgtctaac gacgcttccg ctgccgttgc tggcaaaaac aacaacaacg acaaggaaaa
61 gtcttcaagt gacagcttgt ttgctaacat gtctgtcact tttaagaaag ccctcggggc
121 gcggtctaaa caaccgcccc cgggagaaac aaaacaaata caaaaaccac caaggccacc
181 gacaccggaa ttggtgaaga gaatacctcc acccccaccc aatggcgagg atgaaccagg
241 gatagtgtac aaagtgggag agggtgtgtc tgggctgccc gacctaacaa ctgtggtaca
301 acctgacgca caaaacacag cttatagtgt tcccccactt agccagagag aagtcggcga
361 agctaaagaa ccgctgcctg gctccattct ggaaatgtgg gatggtgaga tctaccacta
421 tgggctgtat gttgagcggg ggcatgtgct cggagtgcac aaaccacctg ctgcaataag
481 cctcgccaaa attgaaataa caccgctgtc tctctactgg agagtggtct acactcccca
541 gtatttgata gatccaggaa ctcttaagaa cttgagtgga gagactttcc catacacggc
601 ctttgacaac aactgttatg ccttctgttg ttgggtccta gacctcaacg actcctggct
661 tagcaggaga atgatccaga gaacaactgg gttcttcaaa ccttatcagg attggaacag
721 aaaaccctta ccaaccatgg atgaaccgaa aattaagaag gccgcgaatg ctgtcctatg
781 cgctctctcc tcactcttca ctagacccat taaggacatc atcggaaagc ttagaccact
841 gaatgttctt aatatactgg caacctgcga ttggactttt gcaggcatag tggaatcctt
901 gatccttctt gctgaactct ttggggtgtt ctggacaccc ccagatgtgt ctgcgatgat
961 tgctccctta ctcggtgact acgagatgca aggtcccgaa gacctggccg tggaacttgt
1021 gcccgtggtg atgggaggaa taggtttggt gttaggattc accaaagaaa agatcggcaa
1081 gatgctttca tcagctgcga ccacacttag ggcctgcaag gatctaggat cttatggatt
1141 ggagatactc aaattggtca tgaagtggtt cttccccaag aaggaggagg ctaacgaact
1201 agccatggtg agggccattg aggatgcagt cctggatttg gaggcaatag aaaacaatca
1261 catgaccatc cttctcaagg ataaagacag cctggccaca tacatgagga ctcttgactt
1321 ggaagaagag aaagcaagga aactgtcaac caaatcggcg tcacctgaca tcgtgggtac
1381 aataaacgca ttgttggcta ggatagcagc cgccaggtca ctggtccaca aggctaagga
1441 ggagctctcg agcagacaga gacctgttgt tgtaatgata tcaggtagac caggtatagg
1501 aaagacccat ctggccagag agctagccaa gaaagttgcg tcaacactgt caggcgacca
1561 aaggattgga ctggtaccta ggaatggcgt cgaccactgg gacgcctaca agggagaaag
1621 ggtggtcctg tgggatgact atggtatgag caaccctata caggacgcac tgaggctcca
1681 agaattggct gacacctgtc ctctgaccct aaattgtgat aggattgaaa acaaaggaaa
1741 agtgttcgac agtgatgcca taattataac aaccaacctt gcaaacccag caccactaga
1801 ctatgtcaac tttgaggcct gctctagacg catagacttc ttggtgtatg cagacgcacc
1861 tgacattgag aaggctaagc gtgacttccc tggccaacca gatatgtgga aagaccattt
1921 cagaccagac ttctcacaca ttaaacttca gctggcacca cagggaggtt ttgacaaaaa
1981 tggcaacacc ccacatggca aaggtgtggt aaagtccctg acgattggtt ctctgatcgc
2041 cagggcctcc ggcttgctcc acgagagaat ggatgaattc gagctccaag gctctggcct
2101 gccaaccttc aattttgacc gcaacaaagt cgccgccttc agacaattag cagctgaaaa
2161 caaatatggt cttatggaca cattgagggt cggcaaccaa ctgaaaagtg ttaagaccct
2221 ggatgagctg aagcaggcca taaagaacat cagtatcaag aagtgtcaga tagtgtataa
2281 tggatgcacc tataccatgg aatctgatgg gaagggcaag gttgtggttg aaaaggtaca
2341 aaacgcaaca gttcaaacca acaatgaact tgtaggagcg ctccaccacc tgagatctgc
2401 aaggataaga tactatgtta aatgtttcca agaagccatt tactctctac tccaaattgc
2461 tggtgcagcc tttgtcacct cacgcatcgt gaggcgtatg aacatatcaa acctctggtc
2521 gaagccaccc atcgaggagg gtgatgagcc tgaagacaga ggaggatgcc ccaagcccag
2581 ggatgaagac gatctcacta ttgactctag agacattaaa gtggaaggga agaagggcaa
2641 gaacaagtct ggccggggca agaaacacac agccttctct tccaagggcc tcagtgatga
2701 agagtacgat gagtacaaga gaatcagaga ggagaggaat ggcaaatact caatagagga
2761 atacctccaa gatagggaca gatactatga agagcttgcc attgctaagg ccactgagga
2821 ggacttctgt gaggaggagg agatcaaaat ccgccagaga atcttccgac ccaccaggaa
2881 gcagcggaaa gaggaaaggg ccacgcttgg gcttgtcaca ggatcggaaa tcagaaagag
2941 gaatccagat gactttaaac caaaaggaaa attgtgggct gatgacaaca ggagcgtgga
3001 ttacaatgag aggatagatt ttgaggctcc cccgagtgtc tggtctagga tagtcaactt
3061 tggcacaggc tggggattct gggtttctcc aagtctcttt ataacttcaa cacacgtcat
3121 accaaaagga atcactgagg cctttggagt gcccataaac caaatccaaa ttcacaaatc
3181 tggagaattt tgccgcttgc ggtttccaaa gccaattaga ccagacgtga gtgggatgat
3241 cttggaagag ggcgcccctg aaggcactgt tgtgtctatt ctcatcaaaa ggacaacagg
3301 ggagctgatg cctcttgcag tcagaatggg gactcatgcc acaatgaaaa tccaaggtag
3361 aacggtgggt ggccagatgg gtatgcttct cactggctca aatgctaaag gcatggatct
3421 aggtacaacg ccaggtgact gcggatgtcc atacatatac aaaaggggca atgaccttgt
3481 ggtcattggg gtgcacactg cagcagctcg tggaggcaac acggtcatat gtgccacaca
3541 gggaagtgaa ggtgaagcca ctcttgaagg aggtgacaac aagggcacct attgtggagc
3601 ccccatcttg ggacctggca atgcaccaaa attgagcaca aagacaaaat tctggaggtc
3661 ctctaacgca ccgcttcccc caggtactta tgaaccagca taccttggtg ggagagaccc
3721 gcgcgtgaag ggaggcccat ctctgcaaca agttatgaga gaccaactta aaccttttac
3781 agagcccaga gggaagccac caaacccaaa tgtcttagag tcagcaaaga agactatcat
3841 caatgttctg gaacaaacca ttgacccccc tcaaaagtgg tcatatgccc aagcttgtgc
3901 atccctcgac aagacaacct ccagtggata cccacaccac gtccggaaga atgactattg
3961 gagtggtgaa tccttcacag gaaaacttgc agatcaggct tcaaaagcaa atctcatgta
4021 tgaggaaggc aagcacatgc aaccagttta caccgcggca ctcaaagacg agctcgtgaa
4081 aactgacaaa atttatggca aaatcaagaa aagactcctg tggggttctg acctctccac
4141 aatgattcga tgcgccagag catttggtgg cctcatggat gaattcaaag caaattgtat
4201 tacactccct atcagagttg gtatgaatat gaatgaagat ggtcccataa tatttgagaa
4261 acattccagg tataggtacc actatgatgc tgattactcc cgctgggact ccacacaaca
4321 gcgggcagtg ctggaagcgg cacttgaaat catggtgaga ttttctgctg agccacagct
4381 ggcacaaata gtggcagagg acctgctgtc accaagtgtg gttgatgtgg gcgatttcaa
4441 aatcgctatc aatgaaggcc taccatctgg cgtgccttgc acctcacaat ggaattctat
4501 tgcccactgg ttacttacct tgtgtgccct ttctgaagtg acaggattag gtcctgacat
4561 catacaagct aactccatgt actctttcta tggtgatgat gagattgtga gcacagacat
4621 aaaattggac tcagagaaat tgaccgcaaa gctcaaagaa tatggcctta aacccactcg
4681 gcccgacaaa actgaggggc cgttggtgat tagtgaggac ctgaatgggt tgactttcct
4741 ccgccgaaca gtcacccgtg atccagcagg ttggtttgga aagttggacc aaaactccat
4801 cctcaggcag ttgtactgga caagaggacc caaccatgaa gaccccagtg agaccatgat
4861 accacacgca caaagacctg tgcagctcat ggcactacta ggagaatcct ccctacatgg
4921 accctcattt tacagcaagg ttagcaaatt agtcatatct gaacttaaag agggaggaat
4981 ggatttttat gtgcccagac aagagtcaat gttcagatgg atgaggttct cagatctaag
5041 cacatgggag ggcgatcgca atctggctcc cagttttgtg aatgaagatg gcgtcgaatg
5101 acgccgctcc atctaatgat ggtgctgctg gtctcgtacc agagggcaac aacgagaccc
5161 ttcccctaga accagttgcg ggcgcagcta tagccgcacc cgtcactggc caaaataata
5221 taattgaccc ctggattaga acaaattttg tgcaagcacc aaatggagag ttcacagtgt
5281 cacctagaaa ctctcctgga gaaattttat taaatttaga gttgggccct gatttgaacc
5341 cttatttggc tcatttgtca agaatgtaca atgggtatgc tggtggagtg gaagttcagg
5401 ttctcctggc agggaacgcg ttcactgccg gaaagatcct cttcgccgct gtcccgccaa
5461 atttcccagt ggaattctta agcccagctc agatcacaat gctcccacat ttaatagtag
5521 atgttaggac tcttgaacca attatgatcc cactccctga tgttaggaat acattcttcc
5581 attatagtaa ccagcctaat agccgcatga gattagtggc tatgctctat accccactca
5641 ggtctaatgg ctcaggtgat gatgtcttta ctgtctcttg cagggtcttg actaggccta
5701 ctcctgattt tgagttcact tatttagtgc caccttctgt tgaatctaaa actaagcctt
5761 tttccttacc tattttaacc ctttctgagc tcacaaattc gaggtttcca gtccccatcg
5821 attcgctttt caccgcccag aataatgtgt tgcaggtgca gtgtcaaaat ggcaggtgta
5881 cacttgatgg tgagttacaa ggcacaaccc agttgctccc aactggcatc tgtgcattca
5941 gaggacgggt gacagcacaa attaaccaac gtgacaggtg gcacatgcaa ctgcaaaacc
6001 tcaatggtgc aacatatgac ccaactgatg atgtgccagc cccgctgggt acacctgact
6061 tcaagggcgt cgtgtttggg atggtaagcc aaagaaatgt gggtaatgac gcgcctggtt
6121 caaccagagc ccaacaggcg tgggtttcaa cttatagccc ccaatttgtc cccaaattag
6181 gttctgtcaa tcttagaatt agtaataatg atgatttcca attccagccg acaaaattca
6241 caccagtggg catcaatgat gatgatgatg accacccgtt cagacagtgg gaactaccaa
6301 actattcagg ggagcttacc ttgaatatga atcttgcccc cccagttgct ccaaattttc
6361 ctggtgaaca attgctattc ttcagatctt ttgtgccatg ctcaggaggt tacaatcaag
6421 gtattataga ttgtcttatt ccccaagaat ggatccaaca cttctatcag gaatcagcac
6481 cctcccagtc agacgtggcc ctaatcaggt atgtcaaccc cgatacggga cgtacactgt
6541 ttgaagcaaa attgcacaga tctggttaca ttactgtggc tcactctgga gactatcctc
6601 ttgttgttcc ggctaatgga cactttagat ttgattcttg ggtaaatcag ttttactcac
6661 tcgccccaat gggaactggg aatgggcgaa ggagggctca gtaatggctg gggctttcat
6721 tgcaggattg gcaggcgaca tgctcacgtc atctgtgggc tcccttgtga acgcaggggc
6781 aaacgccatc aaccaaaaga tagactttga aaacaacaaa caactccagt ctgcttcctt
6841 tcagcatgat aaagagatgc tccaagcgca ggtgagggca accaagcagc tgcaatctga
6901 aatgatagcc ctaaaacagg gggttttggc cgcaggcggc ttttccccta ctgatgcagc
6961 aaggggatcc attggtgcac ccatgacaaa ggtgcttgac tggtctggca ctcgatactg
7021 ggcgcccaat tccacaaaga caactggcta ttcgggacaa ttcacctctt cactcgtgca
7081 tatgtctagc ccaactgctc cacaatcaaa acctgcgaag cctaggtctc tagctccttc
7141 ctcttcttct agtagtgttt atagtatgta tactcaatct actcatttga catctggctc
7201 tcctagtaat gcttcttctg cctccacaaa attgacaaat ttaagctctg gctcctctca
7261 aaacagaata gcagaatggg taaatcaaca gagaagtctt agccctttca tgagtggcgc
7321 acttaacatc tcacatgtca cgccaccctc aagtagggct tccagttctg ggacggtctc
7381 gaccgtgccc aaggaagttt tggactcctg gacgtctgcg tttaacacac acagacagcc
7441 gctcttcgca cacctcagag tgagggggga gtcacgtgtt tagtgaa
//