Typing tool
|
Complete norovirus genomes
PP423019 | GII.17 | ||
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GII.P17 |
ORF1: 1..5098 ORF2: 5079..6701 ORF3: 6701..7480LOCUS PP423019 7484 bp RNA linear VRL 08-MAR-2024 DEFINITION Norovirus GII isolate 2204018 nonstructural polyprotein (ORF1) gene, partial cds; and VP1 (ORF2) and VP2 (ORF3) genes, complete cds. ACCESSION PP423019 VERSION PP423019.1 KEYWORDS . SOURCE Norovirus GII ORGANISM Norovirus GII Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 7484) AUTHORS Tao,L., Wang,X. and Ding,J. TITLE Direct Submission JOURNAL Submitted (03-MAR-2024) Department of Microbiology Laboratary, Nanjing Municipal Center for Disease Control and Prevention affiliated to Nanjing Medical University, Zizhulin No. 2, Nanjing, Jiangsu 210003, China COMMENT ##Assembly-Data-START## Assembly Method :: BWA v. 0.7.17-r1188 Sequencing Technology :: Illumina ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..7484 /organism="Norovirus GII" /mol_type="genomic RNA" /isolate="2204018" /isolation_source="stool" /host="Homo sapiens" /db_xref="taxon:122929" /country="China" /collection_date="01-Apr-2022" /note="genotype: GII.17[P17]" gene <1..5098 /gene="ORF1" CDS <1..5098 /gene="ORF1" /codon_start=2 /product="nonstructural polyprotein" /protein_id="WWQ69702.1" /translation="SNDASAAVAGKNNNNDKEKSSSDSLFANMSVTFKKALGARSKQP PPGETKQIQKPPRPPTPELVKKIPPPPPNGEDEPGIVYKVGEGVSGLPDLTTVAQPDA QNTAYSVPPLSQREVGEAKEPLPGSILEMWDGEIYHYGLYVERGHVLGVHKPPAAISL AKIEITPLSLYWRVVYTPQYLIDPGTLKNLSGETFPYTAFDNNCYAFCCWVLDLNDSW LSRRMIQRTTGFFKPYQDWNRKPLPTMDEPKIKKAANAVLCALSSLFTRPIKDIIGKL RPLNILNILATCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYEMQGPEDL AVELVPVVMGGIGLVLGFTKEKIGKMLSSAATTLRACKDLGSYGLEILKLVMKWFFPK KEEANELAMVRAIEDAVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARKLSTK SASPDIVGTINALLARIAAARSLVHKAKEELSSRQRPVVVMISGRPGIGKTHLARELA KKVASTLSGDQRIGLVPRNGVDHWDAYKGERVVLWDDYGMSNPIQDALRLQELADTCP LTLNCDRIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYADAPDIEKA KRDFPGQPDMWKDHFRPDFSHIKLQLAPQGGFDKNGNTPHGKGVVKSLTIGSLIARAS GLLHERMDEFELQGSDLPTFNFDRNKVAAFRQLAAENKYGLMDTLRVGNQLKSVKTLD ELKQAIKNISIKKCQIVYNGCTYAMESDGRGKVVVEKVQNATVQTNNELVGALHHLRS ARIRYYVKCFQEAIYSLLQIAGAAFVTSRIVRRMNISNLWSKPPIEEGDEPEDRGGCP KPRDEDDLTIDSRDIKVEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERNGK YSIEEYLQDRDRYYEELAIAKATEEDFCEEEEIKIRQRIFRPTRKQRKEERATLGLVT GSEIRKRNPDDFKPKGKLWADDNRSVDYNERIDFEAPPSVWSRIVNFGTGWGFWVSPS LFITSTHVIPKGITEAFGVPINQIQIHKSGEFCRLRFPKPIRPDVSGMILEEGAPEGT VVSILIKRTTGELMPLAVRMGTHATMKIQGRTVGGQMGMLLTGSNAKGMDLGTTPGDC GCPYIYKRGNDLVVIGVHTAAARGGNTVICATQGSEGEATLEGDDNKGTYCGAPILGP GNAPKLSTKTKFWRSSNAPLPPGTYEPAYLGGRDPRVKGGPSLQQVMRDQLKPFTEPR GKPPNPNVLESAKKTIINVLEQTIDPPQKWSYAQACASLDKTTSSGYPHHVRKNDYWS GESFTGKLADQASKANLMYEEGKHMQPVYTAALKDELVKTDKIYGKIKKRLLWGSDLS TMIRCARAFGGLMDEFKANCITLPIRVGMSMNEDGPIIFEKHSRYRYHYDADYSRWDS TQQRAVLEAALEIMVRFSAEPQLAQIVAEDLLSPSVVDVGDFKIAINEGLPSGVPCTS QWNSIAHWLLTLCALSEVTGLGPDIIQANSMYSFYGDDEIVSTDIKLDPEKLTAKLKE YGLKPTRPDKTEGPLVISEDLNGLTFLRRTVTRDPAGWFGKLDQNSILRQLYWTRGPN HEDPSETMIPHAQRPVQLMALLGESSLHGPSFYSKVSKLVISELKEGGMDFYVPRQES MFRWMRFSDLSTWEGDRNLAPSFVNEDGVE" mat_peptide <1..988 /gene="ORF1" /product="p48" mat_peptide 989..2086 /gene="ORF1" /product="NTPase" mat_peptide 2087..2623 /gene="ORF1" /product="p22" mat_peptide 2624..3022 /gene="ORF1" /product="VPg" mat_peptide 3023..3565 /gene="ORF1" /product="Pro" mat_peptide 3566..5095 /gene="ORF1" /product="RdRp" gene 5079..6701 /gene="ORF2" CDS 5079..6701 /gene="ORF2" /note="major capsid protein" /codon_start=1 /product="VP1" /protein_id="WWQ69703.1" /translation="MKMASNDAAPSNDGAAGLVPEGNNETLPLEPVAGAAIAAPVTGQ NNIIDPWIRTNFVQAPNGEFTVSPRNSPGEILLNLELGPDLNPYLAHLSRMYNGYAGG VEVQVLLAGNAFTAGKILFAAVPPNFPVEFLSPAQITMLPHLIVDVRTLEPIMIPLPD VRNTFFHYSNQPNSRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPTPDFEFTYLVPP SVESKTKPFSLPILTLSELTNSRFPVPIDSLFTAQNNVLQVQCQNGRCTLDGELQGTT QLLPTGICAFRGRVTAQINQRDRWHMQLQNLNGTTYDPTDDVPAPLGTPDFKGVVFGM VSQRNVGNDAPGSTRAQQAWISTYSPQFVPKLGSVNLRISNNDDFQFQPTKFTPVGVN DDDDDHPFRQWELPNYSGELTLNMNLAPPVAPNFPGEQLLFFRSFVPCSGGYNQGIID CLIPQEWIQHFYQESAPSQSDVALIRYVNPDTGRTLFEAKLHRSGYITVAHSGDYPLV VPANGHFRFDSWVNQFYSLAPMGTGNGRRRAQ" gene 6701..7480 /gene="ORF3" CDS 6701..7480 /gene="ORF3" /note="minor structural protein; small basic protein" /codon_start=1 /product="VP2" /protein_id="WWQ69704.1" /translation="MAGAFIAGLAGDMLTSSVGSLVNAGANAINQKIDFENNKQLQSA SFQHDKEMLQAQVRATKQLQSEMIALKQGVLAAGGFSPTDAARGSIGAPMTKVLDWSG TRYWAPNSTKTTGYSGQFTSSPVHMPSPNAPQSKPAKPRSLAPSSSSSSIYSMYTQST HLTSGSSSNASSASTKLTNLSSGSSQNRTAEWVNQQRSLSPFMSGALNISHVTPPSSR ASSSGTVSTVPKEVLDSWTSAFNTHRQPLFAHLRVRGESRV" ORIGIN 1 gtctaacgac gcttccgctg ccgttgctgg caaaaacaac aacaacgaca aggaaaaatc 61 ttcaagtgac agcttgtttg ctaatatgtc tgtcactttt aagaaagccc tcggggcgcg 121 gtctaaacaa ccgcccccgg gagaaacaaa acaaatacaa aaaccaccaa ggccaccgac 181 accggaattg gtgaagaaaa tacctccacc cccacccaat ggcgaggacg aaccagggat 241 agtgtataag gtgggagagg gtgtgtctgg gctgcccgac ctaacaactg tggcacaacc 301 tgacgcacaa aacacagctt atagtgttcc cccacttagc cagagagaag tcggcgaagc 361 taaagaaccg ctgcctggct ccattctgga aatgtgggat ggtgagatct accactatgg 421 gctgtatgtt gagcgggggc atgtgctcgg agtacacaaa ccacctgctg caataagcct 481 tgccaaaatt gaaataacac cgttgtctct ctactggaga gtggtctaca ctccccagta 541 tttgatagat ccaggaactc tcaagaactt gagtggagag actttcccat acacggcctt 601 tgataacaac tgttatgcct tctgttgttg ggtcctagac ctcaacgact cctggcttag 661 caggagaatg attcaaagaa caactggatt tttcaaacct tatcaggatt ggaacagaaa 721 acccttacca accatggatg aaccgaaaat caagaaggcc gcgaatgctg tcctatgcgc 781 tctctcctca ctcttcacta gacccatcaa ggacatcatt gggaagctta gaccactgaa 841 cattcttaat atactggcaa cctgcgattg gacttttgca ggcatagtgg aatccttgat 901 ccttcttgct gaactctttg gggtgttctg gacaccccca gatgtgtctg cgatgattgc 961 tcccttgctc ggtgactacg agatgcaggg ccccgaagac ctggccgtgg aacttgtgcc 1021 cgtggtgatg ggaggaatag gtttggtgtt aggattcacc aaagaaaaga tcggcaagat 1081 gctttcgtca gctgcgacca cacttagggc ctgcaaggat ctaggatctt atggattgga 1141 gatacttaaa ttggtcatga agtggttctt ccccaagaag gaggaggcta acgaactagc 1201 catggtaagg gccattgagg atgcagtcct ggatttggag gcaatagaaa acaatcatat 1261 gaccaccctt ctcaaggata aagacagcct ggccacatac atgaggactc ttgacttgga 1321 agaagagaaa gcaaggaaac tgtcaaccaa atcggcgtca cctgacatcg tgggtacaat 1381 aaacgcattg ttggctagga tagcagccgc caggtcactg gtccacaagg ctaaggagga 1441 gctctcgagc agacagagac ctgttgttgt aatgatatca ggtagaccag gtataggaaa 1501 gacccatctg gccagagagc tagccaagaa agttgcgtca acactgtcag gcgaccaaag 1561 gattggactg gtgcctagga atggcgtcga ccattgggac gcctacaagg gagaaagggt 1621 ggtcctgtgg gatgattatg gtatgagcaa ccctatacaa gacgcactga ggctccaaga 1681 attggctgac acctgtcctc tgaccctaaa ttgtgatagg attgaaaata aaggaaaagt 1741 gttcgacagt gatgccataa ttataacaac caaccttgca aacccagcac cactagacta 1801 tgtcaacttt gaggcctgct ctagacgcat agacttcttg gtgtatgcag acgcacctga 1861 cattgagaag gctaagcgtg atttccctgg ccaaccagat atgtggaaag atcattttag 1921 accagacttc tcacacatta aacttcagct ggcaccacag ggaggttttg acaaaaatgg 1981 caacacccca catggcaaag gtgtggtaaa gtccctgacg attggttctc tgatcgccag 2041 ggcctccggc ttgctccacg agagaatgga tgaattcgag ctccaaggct ctgacctgcc 2101 aaccttcaat tttgaccgca acaaagtcgc cgccttcaga caattagcag ctgaaaacaa 2161 atatggtctt atggacacat tgagggtcgg caaccaactg aaaagtgtta agaccctgga 2221 tgagctgaag caggccataa agaacatcag tatcaagaag tgtcagatag tgtataatgg 2281 atgcacctat gccatggaat ctgatgggag gggcaaggtt gtggttgaga aggtacaaaa 2341 cgcaacagtt caaaccaaca atgaacttgt aggggcgctc caccacctga gatccgcaag 2401 gataagatac tatgttaaat gttttcaaga agccatttac tctctactcc aaattgctgg 2461 tgcagccttt gtcacctcac gcatcgtgag gcgcatgaac atatcaaacc tctggtcgaa 2521 gccacccatc gaggagggtg acgagcctga agacagagga ggatgcccca agcccaggga 2581 tgaagatgac ctcactattg actctagaga cattaaagtg gaagggaaga agggcaagaa 2641 caagtctggc cggggcaaga aacacacagc cttctcttcc aagggcctca gtgatgaaga 2701 gtacgatgag tacaagagaa tcagagagga gaggaatggc aaatactcaa tagaggaata 2761 cctccaagat agggacagat actatgaaga gcttgccatt gctaaggcca ctgaggagga 2821 cttctgtgag gaggaggaga ttaaaatacg ccagagaatc ttccgaccca ccaggaagca 2881 gcggaaagag gaaagggcca cgcttgggct tgtcacagga tcggaaatca gaaagaggaa 2941 tccagatgac tttaaaccaa agggaaaatt gtgggctgat gacaacagga gcgtggatta 3001 caatgagagg atagattttg aggctccccc gagtgtttgg tctaggatag tcaactttgg 3061 cacaggctgg ggattctggg tttctccaag tctctttata acttcaacac acgtcatacc 3121 aaaaggaatc actgaggcct ttggagtgcc cataaaccaa atccaaattc acaaatctgg 3181 agaattttgc cgcttgcggt ttccaaagcc aattaggcca gacgtgagtg ggatgatctt 3241 ggaagagggc gcccctgaag gcactgttgt gtctattctc atcaaaagga caacagggga 3301 gctgatgcct cttgcagtca gaatggggac tcatgccaca atgaaaatcc aaggtagaac 3361 ggtgggtggt cagatgggta tgcttctcac tggctcaaat gctaaaggca tggatctagg 3421 cacaacgcca ggtgactgcg gatgtccata catatacaaa aggggcaatg accttgtggt 3481 cattggggtg cacactgcag cagctcgtgg aggcaacacg gtcatatgtg ccacacaggg 3541 aagtgagggt gaagccactc ttgaaggaga tgacaacaag ggtacctatt gtggagcccc 3601 cattttggga cctggcaatg caccaaaatt gagcacaaag acaaaattct ggagatcctc 3661 taacgcaccg cttcccccag gtacttatga accagcatac cttggtggga gagacccgcg 3721 cgtgaaggga ggcccatctc tgcagcaagt tatgagagat caactcaaac cttttacaga 3781 gcccagaggg aagccaccaa acccaaatgt cttagagtca gcaaagaaga ctatcatcaa 3841 tgttctggaa caaaccattg acccccctca aaagtggtca tatgcccaag cttgtgcatc 3901 cctcgacaag acaacctcca gtggataccc gcaccacgtc cggaagaatg actactggag 3961 tggtgaatcc ttcacaggaa aacttgcaga tcaggcttca aaagcaaatc tcatgtatga 4021 ggaaggcaag cacatgcaac cagtttacac cgcagcactc aaagacgagc tcgtgaaaac 4081 tgacaaaatc tatggcaaaa tcaagaaaag actcctgtgg ggctccgacc tctccacaat 4141 gattcgatgc gccagagcat ttggtggtct catggatgaa ttcaaagcaa attgtattac 4201 actccctatc agagttggta tgagtatgaa tgaagatggt cccataatat ttgagaaaca 4261 ctccaggtac aggtaccact atgatgctga ttactcccgc tgggactcca cacaacagcg 4321 ggcagtgctg gaagcggcac ttgaaatcat ggtgagattt tctgctgagc cacagctggc 4381 acaaatagtg gcagaggacc tgctgtcacc aagtgtggtt gatgtgggcg atttcaaaat 4441 cgctatcaat gaaggcttac catctggcgt gccttgcacc tcacaatgga attctattgc 4501 ccactggtta cttaccttgt gtgccctttc tgaagtgaca ggattaggtc ctgacatcat 4561 acaagctaac tccatgtact ctttctatgg tgatgatgag attgtgagca cagacataaa 4621 attggaccca gagaaattga ccgcaaagct caaagaatat ggccttaaac ccactcggcc 4681 cgacaaaact gaggggccgt tggtgattag tgaggacctg aatgggttga ctttcctccg 4741 ccgaacagtc acccgcgatc cagcaggttg gtttggaaag ttggaccaaa actccatcct 4801 caggcagttg tactggacaa gaggacccaa ccatgaagac cccagtgaga ccatgatacc 4861 acacgcacaa agacctgtgc agctcatggc actactagga gagtcctccc tacatggacc 4921 ctcattttac agcaaggtta gcaaattagt aatatctgaa cttaaagagg gaggaatgga 4981 tttttatgtg cccagacaag agtcaatgtt cagatggatg aggttctcag atctaagcac 5041 atgggagggc gatcgcaatc tggctcccag ttttgtgaat gaagatggcg tcgaatgacg 5101 ccgctccatc taatgatggt gctgctggtc tcgtaccaga gggcaataac gagacccttc 5161 ccctagaacc agttgcgggc gcagctatag ccgcacccgt cactggccaa aataatataa 5221 ttgacccctg gattagaaca aattttgtgc aagcaccaaa tggagagttc acagtgtcac 5281 ccagaaactc tcctggagaa attttattaa atttagagtt gggccctgat ttgaaccctt 5341 atttggctca tttgtcaagg atgtacaatg ggtatgctgg tggagtggaa gttcaggttc 5401 tcctggcagg gaacgcgttc actgccggaa agatcctctt cgccgccgtc ccgccaaatt 5461 tcccagtgga attcttaagc ccagcccaga tcacaatgct cccacattta atagtagatg 5521 ttaggactct tgaaccaatt atgatcccac tccctgatgt taggaataca ttcttccatt 5581 atagtaacca gcctaacagc cgcatgagat tagtggctat gctctatacc ccactcagat 5641 ctaatggctc aggtgatgat gtctttactg tctcttgcag ggttttgact aggcctactc 5701 ctgattttga gttcacttat ttagtgccac cttctgttga atccaaaact aagccttttt 5761 ccttacctat tttaaccctt tctgagctca caaattcgag gtttccagtc cccatcgatt 5821 cgctttttac cgcccagaat aatgtgttgc aggtgcagtg tcaaaatggc aggtgtacac 5881 ttgatggcga gttacaaggc acaacccagt tgctcccaac tggcatctgc gcattcagag 5941 gacgggtgac agcacaaatt aaccaacgtg acaggtggca catgcaactg caaaacctca 6001 atggtacaac atatgaccca actgatgatg tgccagcccc gctgggtaca cctgacttca 6061 agggcgtcgt gtttgggatg gtaagccaaa gaaatgtggg taatgatgcg cctggctcaa 6121 ccagagccca acaggcgtgg atttcaacct atagccccca atttgtcccc aaattaggtt 6181 ctgtcaatct cagaattagt aataatgatg atttccaatt ccagccgaca aaattcacac 6241 cagtgggcgt caatgatgac gatgatgacc acccgttcag acagtgggaa ctaccaaact 6301 attcagggga gcttaccttg aatatgaatc ttgccccccc agttgctcca aattttcctg 6361 gtgaacaatt gttattcttc agatctttcg tgccatgctc aggaggttac aaccaaggta 6421 ttatagattg tcttattccc caagaatgga tccaacattt ctatcaggaa tcagcaccct 6481 cccagtcaga cgtggcccta atcaggtatg tcaaccccga tacgggacgt acactgtttg 6541 aagcaaaatt gcacagatct ggttacatta ctgtggctca ctctggagac tatcctcttg 6601 ttgttccggc taatggacac tttagatttg attcttgggt aaatcagttt tactcactcg 6661 ccccaatggg aactgggaat gggcgaagga gggctcagta atggctgggg ctttcattgc 6721 aggattggca ggcgacatgc tcacgtcatc tgtgggctcc cttgtgaacg caggggcaaa 6781 cgccatcaac caaaagatag actttgaaaa taacaaacaa ctccagtctg cttcctttca 6841 gcatgataaa gagatgctcc aagcgcaggt gagggcaacc aagcagctgc aatctgaaat 6901 gatagcccta aaacaggggg ttttggccgc aggcggcttt tcccccactg atgcagcacg 6961 gggatccatt ggtgcaccca tgacaaaggt gcttgactgg tctggcactc gatactgggc 7021 gcccaattcc acaaagacaa ctggctattc gggacaattc acctcttcac ctgtgcatat 7081 gcctagccca aatgctccac aatcaaaacc tgcaaagcct aggtctctag ctccttcctc 7141 ttcttctagt agtatctaca gtatgtacac tcagtctact catttgacat ctggctcttc 7201 tagtaatgct tcttctgcct ccacaaaatt gacaaattta agctctggct cctctcaaaa 7261 cagaacagca gagtgggtaa atcaacagag aagtcttagc cctttcatga gtggcgcact 7321 taacatctca catgtcacgc caccctcaag tagggcttcc agttctggga cggtctcgac 7381 cgtgcccaag gaagttttgg actcctggac gtctgcgttt aacacacaca gacagccgct 7441 cttcgcacac ctcagagtga ggggggagtc acgtgtttag tgaa //