Typing tool
|
Complete norovirus genomes
PP381831 | GII.4 Sydney | ||
---|---|---|---|
GII.P16 |
ORF1: 5..5104 ORF2: 5085..6707 ORF3: 6707..7513LOCUS PP381831 7549 bp RNA linear VRL 28-FEB-2024 DEFINITION Norovirus GII isolate 951001 nonstructural polyprotein (ORF1), VP1 (ORF2), and VP2 (ORF3) genes, complete cds. ACCESSION PP381831 VERSION PP381831.1 KEYWORDS . SOURCE Norovirus GII ORGANISM Norovirus GII Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 7549) AUTHORS Tacharoenmuang,R., Singchai,P., Andon,P., Rojanawiwat,A., Sereewit,J., Sobolik,E.B., Roychoudhury,P. and Greninger,A.L. TITLE Direct Submission JOURNAL Submitted (23-FEB-2024) Virology Lab, University of Washington Virology Lab, 1616 Eastlake Ave E, Suite 320, Seattle, WA 98102, USA COMMENT ##Assembly-Data-START## Assembly Method :: Geneious v. Prime 2024 Sequencing Technology :: Illumina ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..7549 /organism="Norovirus GII" /mol_type="genomic RNA" /isolate="951001" /isolation_source="rectal swab" /host="Homo sapiens" /db_xref="taxon:122929" /country="Thailand" /collection_date="11-Jan-2024" /note="genotype: GII.P16-GII.4" gene 5..5104 /gene="ORF1" CDS 5..5104 /gene="ORF1" /codon_start=1 /product="nonstructural polyprotein" /protein_id="WWE39390.1" /translation="MKMASNDATVAVACNNNNDKEKSSGEGLFTNMSSTLKKALGARP KQPAPRDKPQKPPRPPTPELVKRIPPPPPNGEEEEEPVIRYEVKSGISGLPELTTVPQ PDVANTAFSVPPLSLRENREAKEPLTGAILEMWDGEIYHYGLYVEKGLVLGVHKPPAA ISMARVELTPLSLYWRVVYTPQYLISPETLRRLNGEAFPYTAFDNNCYAFCCWVLDLN DSWLSRRMVQRTTGFFRPYQEWNRKPLPTMDDSKIKKVANIFLCSLSTLFTRPIKDLI GKIKPLNILNILATCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGP EDLAVELVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWF FPKKEETNELAMVRAIEDAVLDLEAIENNHMTTLLKDKDSLATYMKTLDMEEEKARRL STKSASPDIVGTINALLARIAAARSLVHRAKEELSSRIRPVVVMISGKPGIGKTHLAR EVARKVASTLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRIQELAD TCPLTLNCDRIENKGKVFDSEVIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEV EKAKRDFPGQPDMWKDAFKPDFSHIKLQLAPQGGFDKNGNTPHGKGVMKTLTTGSLIA RASGLLHERMDEFELQGPTITTFNFDRNRIAAFRQLAAENKYGLVDTMKVGNQLKGVK TMEELKQAIRNVTIKRCRIIYGGSTYDLESDGKGKVLVEKVKNTSVQTNNELAGALHH LKHARIRYYVKCVQEAVYSIIQIAGAAFVTTRIARRMNIQELWSKPQLDQSEPEAREE ALKSEDDEFVISSKDIKEEGKKGKNKTGRGKKHTAFSSKGLSDEEYDEYKRIREERNG KYSIEEYLQDRDRYYEELAIAKATEEDFCEEEEIKIRQRIFRPTRKQRKEERATLGLV TGSEIRKRNPDDFKPKGKLWADDNRSVDYNEKLDFEAPPSIWSRIVSFGSGWGFWVSP SLFITSTHVIPAGITEAFGVSIKQIQIHKSGEFCRFRFPKPIRPDVTGMILEEGAPEG TVATVLIKRPTGELMPLAARMGTHATMKIQGRMVGGQMGMLLTGSNAKGMDLGTTPGD CGCPYIYKRGNDYIVIGVHTAAARGGNTVICATQGSEGEATLEGGDNKGTYCGAPILG PGGAPKLSTKTKFWRSSNTPLPPGTYEPAYLGGRDPRVKGGPSLQQVMRDQLKPFTEP RGKPPRPSVLEAAKQTIINVLEQTLDPPQKWTYAQACASLDKTTSSGNPHHVRKNEFW NGETFTGKLADQASKANLMFEEGKHMTPVYTAALKDELVKTEKIYGKIKKRLLWGSDL STMVRCARSFGGLMDEMKAHCISLPVRVGMNMNEDGPIIFEKHSRYKYHYDADYSRWD STQQRAVLAAALEIMVRFSAEPQLAQIVAEDLLAPSVVDVGDFKITINEGLPSGVPCT SQWNSIAHWLLTLCALSEVTKLSPDIIQANSMFSFYGDDEIVSTDIKLDPEQLTAKLK EYGLKPTRPDKTEGPLIISEDLDGLTFLRRTVTRDPAGWFGKLDQSSILRQMYWTRGP NHEDPNETMIPHSQRPIQLMALLGEASLHGPSFYSKISKLVITELKEGGMDFYVPRQE PMFRWMRFSDLSTWEGDRNLAPNFVNEDGVE" mat_peptide 5..1000 /gene="ORF1" /product="p48" mat_peptide 1001..2098 /gene="ORF1" /product="NTPase" mat_peptide 2099..2629 /gene="ORF1" /product="p22" mat_peptide 2630..3028 /gene="ORF1" /product="VPg" mat_peptide 3029..3571 /gene="ORF1" /product="Pro" mat_peptide 3572..5101 /gene="ORF1" /product="RdRp" gene 5085..6707 /gene="ORF2" CDS 5085..6707 /gene="ORF2" /note="major capsid protein" /codon_start=1 /product="VP1" /protein_id="WWE39391.1" /translation="MKMASSDANPSDGSAANLVPEVNNEVMALEPVVGAAIAAPVAGQ QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG FEVQVILAGNAFTAGKIIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD VRNNFYHYNQSNDSTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP TVESRTKPFSVPVLTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT QLSPVNICTFRGDVTHTTGSHNFTMNLASQNWNNYDPTEEIPAPLGTPDFVGKIQGML TQTTRTDGSTRGHKATVYTGSADFAPKLGRVQFETDTNHDFEANQNTKFTPVGVIQDG STTHRNEPQQWVLPSYSGRNTHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD CLLPQEWVQYFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAV" gene 6707..7513 /gene="ORF3" CDS 6707..7513 /gene="ORF3" /note="minor structural protein; small basic protein" /codon_start=1 /product="VP2" /protein_id="WWE39392.1" /translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA SFQFSSNLQQASFQHDKEMLQAQIEATKKLQQEMMRVKQAMLLEGGFSETDAARGAIN APMTKALDWSGTRYWAPDARITTYNAGHFSTPQPSGALPGRANFRDAVPARGPSTRPS NSSAATSVHSNQTISTRLGSTAGSGTSVSSPPSTARTRSWVEDQNRDLSPFMRGAHNI SFVTPPSSRSSSQGTVSTVPKEILDSWTGAFNTRRQPLFAHIRKRGESRV" ORIGIN 1 gtgaatgaag atggcgtcta acgacgctac cgttgccgtt gcttgcaaca acaacaacga 61 caaggaaaaa tcttcaggtg aaggcttatt cacaaatatg tcttccacct taaagaaagc 121 cctcggggct aggcccaaac agcctgcccc gagagacaaa cctcaaaagc ccccaagacc 181 accaactcct gagttggtca agaggatacc ccctcctcca cctaatggcg aagaagaaga 241 agaaccagtc attaggtatg aggttaagag cggaatctct ggcctgcccg agctcacaac 301 agtcccccaa ccggacgtgg ccaacacagc attcagtgtt ccaccactga gcttgagaga 361 aaacagggag gccaaggaac cgctaacagg ggcaatatta gagatgtggg atggagagat 421 atatcactat ggcctatacg tggagaaagg cttagtgttg ggtgtacaca aaccacctgc 481 agccataagc atggcaagag tggaactgac gccgctgtca ttatactggc gtgtagtgta 541 cactccccaa tacctcatct cccctgaaac tcttaggagg ctcaatgggg aggctttccc 601 ttacaccgcc tttgacaaca actgctatgc cttttgttgc tgggtgctag acctcaacga 661 ctcatggctt agcaggagaa tggtgcagag aacaacgggc ttcttcagac cttaccaaga 721 gtggaacaga aaacccctgc ctaccatgga tgactccaaa attaagaagg tggcaaatat 781 attcctatgt tcattgtcca cattattcac cagacccata aaagatctca taggaaaaat 841 taaaccatta aacatattga acattctggc aacgtgtgac tggacgtttg ccgggatagt 901 ggagtctcta atattacttg ctgaactctt cggagttttc tggacacccc cagatgtgtc 961 tgctatgatc gctcccttgc tcggggacta cgagttgcag gggccagagg acctcgccgt 1021 tgaactcgtg cctgtggtaa tgggagggat tggtttggtg ttgggattca ccaaagagaa 1081 aattggcaaa atgttgtctt cagcagcatc aacactcagg gcttgcaaag atcttggtgc 1141 ctatggctta gagatactaa aattggtcat gaagtggttc ttcccaaaga aagaggagac 1201 caatgagcta gccatggtga gggccataga ggatgctgta ctagatcttg aggcaataga 1261 aaataaccac atgacaaccc tgttgaaaga caaagacagc ttagcaacat acatgaagac 1321 actagacatg gaggaggaga aagccagaag gttgtccaca aaatctgcat cccctgacat 1381 agttgggaca atcaacgccc tattggctcg gatagcagcg gccagatcat tagtccacag 1441 ggccaaggaa gagctatcta gcaggataag accagtagtt gttatgatat ctggcaaacc 1501 aggaataggc aaaactcatc tggccaggga ggtggcaaga aaggtggctt ccactctcac 1561 aggggaccag agagttggac tcataccaag aaacggtgtg gaccattggg atgcatacaa 1621 aggcgagaga gtcgtgctgt gggacgacta tggtatgagt aaccccatcc atgatgctct 1681 ccgcatacaa gaattggctg atacgtgtcc cctcacttta aattgtgaca gaattgaaaa 1741 caaaggaaaa gtttttgaca gtgaagtcat aataattaca acaaaccttg ccaacccagc 1801 cccacttgat tatgtcaact ttgaggcttg ttccaggaga attgacttcc tggtgtacgc 1861 tgaggcacca gaagtagaga aggcaaagcg agacttccct ggccagccag atatgtggaa 1921 ggacgccttc aagccggact tttcacacat taagttgcaa cttgcacctc agggcggctt 1981 tgacaagaat ggcaacaccc cacatgggaa aggagtgatg aagaccctca ctaccggctc 2041 tctgattgct cgtgcatcag gcctactaca tgagaggatg gatgaatttg aactccaagg 2101 ccccacaatc accaccttca atttcgaccg gaacagaatc gcagcattta gacaactggc 2161 tgcagaaaac aagtatggat tagtggacac catgaaagtt ggcaatcaat taaaaggagt 2221 gaaaaccatg gaagaactca aacaagcaat taggaatgtg accatcaaaa ggtgccggat 2281 catttacggt ggctctacat atgaccttga atctgacggc aagggcaaag ttttggtgga 2341 aaaggtcaag aacacctctg tacagaccaa caacgagttg gccggggcct tgcaccatct 2401 caaacacgcc cgaatcagat actatgtcaa atgcgtgcaa gaagcggtct attccatcat 2461 acaaattgcc ggcgctgcgt ttgtcaccac gcgtattgca cgccgcatga acatacaaga 2521 actctggtcg aagccacaat tagatcaaag tgaaccagag gctagggaag aggcccttaa 2581 gtcagaagac gacgagttcg tcatatcttc taaggacatc aaggaggaag gaaagaaggg 2641 caagaataaa actggccgtg gcaagaaaca cactgcattc tccagcaagg gcttgagtga 2701 tgaggagtat gacgagtata agaggataag agaagagaga aatgggaagt actctataga 2761 ggagtatctt caagacagag acaggtacta tgaggagctc gccattgcca aggccacgga 2821 agaagacttc tgtgaagagg aggagattaa aatccgtcag agaattttcc gtcccaccag 2881 gaaacaaaga aaggaagaaa gggccacatt agggctagta acgggttcag aaatcagaaa 2941 gagaaaccct gatgacttca aacccaaagg gaagctgtgg gccgatgaca acagaagtgt 3001 tgactacaat gaaaaactgg actttgaggc ccccccaagc atatggtcta ggatcgtgag 3061 ctttggttct ggctggggct tctgggtatc accaagcctg tttataacat caactcatgt 3121 gatccccgca ggcataacag aagcatttgg agtctccatc aaacaaattc agatccacaa 3181 atcaggtgaa ttttgccggt tcagattccc aaaaccaatt agaccagatg ttacaggaat 3241 gatcttggaa gaaggtgcgc ctgagggcac cgtggcaact gtgctcatca aacgccccac 3301 cggggagctc atgcctcttg cagccagaat gggaacacac gcaaccatga aaattcaagg 3361 ccgcatggtt ggcgggcaga tgggtatgtt gctcactgga tcaaatgcta aaggaatgga 3421 tttggggaca acacctggtg actgtggctg cccctacatc tataaaagag gcaacgacta 3481 tatagtcatt ggggtgcata ctgcagcagc ccgtggtgga aacaccgtca tctgtgccac 3541 acagggaagt gagggtgagg caactcttga gggtggagat aacaaaggaa catactgtgg 3601 ggcacccatt ctgggccctg ggggcgcacc aaaattgagc accaaaacca aattttggag 3661 gtcatcgaac acgccccttc caccagggac gtatgagcct gcctacctcg gcggccgtga 3721 tccacgtgtc aagggtgggc cctccttgca gcaggtaatg agagatcagt tgaagccatt 3781 cactgaaccc aggggcaaac ctccaagacc aagtgtatta gaagcggcca aacaaaccat 3841 catcaatgtc ctcgaacaaa ccctggatcc tccacaaaaa tggacatacg cacaggcgtg 3901 tgcctcactt gacaaaacca cctccagcgg gaatccccat cacgtccgaa agaatgaatt 3961 ctggaatggt gagaccttta ctggaaaatt ggcagaccaa gcatcaaaag caaatctaat 4021 gtttgaggaa gggaaacata tgacaccagt gtatacagca gcactcaagg acgagctagt 4081 taagactgag aaaatctatg gaaagattaa gaagaggctg ctctggggct ctgacttgtc 4141 caccatggtc cggtgtgcta ggtcatttgg tgggcttatg gacgagatga aggcacactg 4201 catatcactc ccagtccgag ttggcatgaa tatgaatgaa gatggcccaa taatatttga 4261 gaaacattcc aggtataagt accactatga tgcagactac tctcgttggg attcaacaca 4321 acagagggca gtattggcag cagccttgga aatcatggtc agattctctg cagaaccaca 4381 gctggcacaa atagtcgctg aggatctgct ggcccctagt gtagtagatg taggagactt 4441 caaaatcaca ataaatgaag ggctcccctc tggtgttcca tgcacttctc aatggaattc 4501 cattgcacac tggctactaa ctctctgtgc cttgtctgaa gtcaccaaac tgtccccaga 4561 cattatacag gcaaattcca tgttctcatt ttacggtgat gacgagattg tcagcaccga 4621 cataaaatta gatcctgaac agttaaccgc caaattgaag gagtacggtc tgaaaccaac 4681 ccgcccagac aaaaccgagg gacccttgat catcagtgaa gatttggacg gactcacttt 4741 cctccgaagg acggtgactc gtgacccagc tggttggttt ggtaaactgg accagagctc 4801 cattttgagg cagatgtact ggactagagg gccaaatcat gaagacccca atgagacaat 4861 gataccccat tctcagagac ccatacagct catggcactg cttggtgaag cttcccttca 4921 cgggccctct ttctatagta aaatcagcaa attggtcata actgaactca aggaaggtgg 4981 gatggacttt tacgtgccaa gacaggaacc catgttcagg tggatgaggt tttctgactt 5041 gagcacgtgg gagggcgatc gcaatctggc tcccaatttt gtgaatgaag atggcgtcga 5101 gtgacgccaa cccatctgat gggtccgcag ccaacctcgt gccagaggtc aacaatgagg 5161 ttatggcttt ggagcccgtt gttggtgccg ctattgcggc acctgtagcg ggccaacaaa 5221 atgtaattga cccctggatt agaaataatt ttgtacaagc ccctggtggg gagtttacag 5281 tatcccctag aaatgctcca ggtgaaatac tatggagcgc gcccctaggc cctgacctaa 5341 atccctacct atcccatttg gccagaatgt acaatggtta tgcaggtggc tttgaagtgc 5401 aggtaattct cgcggggaac gcgttcaccg ctgggaagat tatatttgca gcagtcccac 5461 caaattttcc aactgaaggc ttaagcccta gccaagtcac tatgttccct catataatag 5521 tagatgttag acaattggaa cctgtgctga tccccttacc cgatgttagg aataatttct 5581 atcattacaa tcagtcaaat gactccacta ttaagttgat agcaatgttg tatacaccac 5641 ttagggctaa taatgctgga gatgatgttt tcacagtctc gtgccgagtt ctcacgagac 5701 catcccccga ttttgatttc atattcttag taccacccac agttgagtca agaactaaac 5761 cattctccgt tccagtttta actgttgagg agatgaccaa ttcaagattc cccatcccct 5821 tggaaaagtt gttcacaggc cccagcagtg catttgttgt tcaaccacaa aacggcagat 5881 gcacaactga tggcgtgctc ctaggcacca ctcaactgtc tcctgtcaac atctgcacct 5941 tcagagggga tgtcacccac accacaggta gccacaactt cactatgaat ttggcttctc 6001 aaaattggaa caactacgac ccaacagaag aaatcccagc tcccctagga actccagatt 6061 ttgtggggaa gattcaaggc atgctcaccc aaaccacaag gacagatggt tcaacacgcg 6121 gccacaaagc tacagtgtac actgggagcg ccgactttgc tccaaaactg ggtagagttc 6181 aatttgaaac tgacacaaac catgattttg aagctaatca gaacacaaag ttcaccccag 6241 tcggtgtcat ccaagatggt agcaccaccc accgaaacga accccaacag tgggtgcttc 6301 caagttactc aggcagaaac actcacaatg tacatttggc ccccgctgta gcccccacct 6361 ttccgggtga gcaacttctc ttctttagat ctaccatgcc cggatgtagc gggtacccca 6421 acatggattt ggactgtctg ctcccccagg aatgggtgca gtatttctac caagaggcag 6481 ccccagcaca atctgatgtg gctctgctaa gatttgtgaa cccagacaca ggtagggttt 6541 tgtttgagtg caagcttcac aaatcaggtt atgttacagt ggctcacact ggccaacatg 6601 atttggttat cccccccaat ggttacttta ggtttgattc ctgggtcaac cagttctaca 6661 cgcttgcccc catgggaaat ggaacggggc gtagacgtgc agtataatgg ctggagcttt 6721 ctttgctgga ttggcatctg atgtccttgg ctctggactt ggttccctta tcaatgctgg 6781 ggctggggcc atcaaccaaa aagttgagtt tgaaaataac agaaaattgc aacaagcatc 6841 cttccaattt agcagtaatt tgcaacaggc ctcctttcaa catgataaag agatgctcca 6901 agcacaaatt gaggccacca aaaagctaca acaggaaatg atgagagtta agcaggcaat 6961 gctcctagag ggtgggttct ctgagacaga tgcggcccgc ggggcaatca acgcccccat 7021 gacaaaggct ctggactgga gcgggacaag gtactgggct ccagatgcta gaattacaac 7081 atacaatgca ggccactttt ccacccctca accatcgggg gcactaccag gaagagctaa 7141 ttttagggat gctgtccctg ctcggggacc ctccaccaga ccttctaact cttctgctgc 7201 cacctctgtg cattcaaatc aaactatttc aacgagactt ggttctacag ctggttctgg 7261 aaccagtgtc tcgagccccc cgtcaactgc aaggactagg agctgggttg aggatcaaaa 7321 tagggatttg tctcctttca tgaggggggc ccacaacata tcatttgtca ccccaccatc 7381 tagcagatcc tctagccaag gcacagtctc aaccgtgcct aaagaaattt tggactcctg 7441 gactggcgct tttaacacgc gcaggcagcc tctcttcgct cacattcgta agcgagggga 7501 gtcacgggtg taatgtgaaa agacaaaact gattactttc ttcttcttt //