Typing tool
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Typing tool
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Complete norovirus genomes
| PP267300 | GII.2 | |
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| GII.P16 |
ORF1: 1..5092
ORF2: 5073..6701
ORF3: 6701..7480
LOCUS PP267300 7490 bp RNA linear VRL 09-FEB-2024
DEFINITION Norovirus GII isolate 2011257 nonstructural polyprotein (ORF1)
gene, partial cds; and VP1 (ORF2) and VP2 (ORF3) genes, complete
cds.
ACCESSION PP267300
VERSION PP267300.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7490)
AUTHORS Tao,L., Wang,X. and Ding,J.
TITLE Direct Submission
JOURNAL Submitted (04-FEB-2024) Department of Microbiology Laboratary,
Nanjing Municipal Center for Disease Control and Prevention
affiliated to Nanjing Medical University, Zizhulin No. 2, Nanjing,
Jiangsu 210003, China
COMMENT ##Assembly-Data-START##
Assembly Method :: BWA v. 0.7.17-r1188
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7490
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="2011257"
/isolation_source="stool sample"
/host="Homo sapiens"
/db_xref="taxon:122929"
/country="China"
/collection_date="25-Nov-2020"
/note="genotype: GII.2[P16]"
gene <1..5092
/gene="ORF1"
CDS <1..5092
/gene="ORF1"
/codon_start=2
/product="nonstructural polyprotein"
/protein_id="WVN22388.1"
/translation="ASNDATVAVACNNNNDKEKSSGEGLFTNMSSTLKKALGARPKQP
APRDKPQKPPRPPTPELVKRIPPPPPNGEEEEEPVIRYEVKSGISGLPELTTVPQPDV
ANTAFSVPPLSLRENREAKEPLTGAILEMWDGEIYHYGLYVEKGLVLGVHKPPAAISM
ARVELTPLSLYWRVVYTPQYLISPETLRRLNGEAFPYTAFDNNCYAFCCWVLDLNDSW
LSRRMIQRTTGFFRPYQEWNRKPLPTMDDSKIKKVANIFLCSLSTLFTRPIKDLIGKI
KPLNVLNILATCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPEDL
AVELVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFPK
KEEANELAMVRAIEDAVLDLEAIENNHMTTLLKDKDSLATYMKTLDMEEEKARRLSTK
SASPDIVGTINALLARIAAARSLVHRAKEELSSRIRPVVVMISGKPGIGKTHLAREVA
RKVASTLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRIQELADTCP
LTLNCDRIENKGKVFDSEVIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEKA
KRDFPGQPDMWKDAFKPDFSHIKLQLAPQGGFDKNGNTPHGKGVMKTLTTGSLIARAS
GLLHERMDEFELQGPTITTFNFDRNRITAFRQLAAENKYGLVDTMKVGNQLKGVKTME
ELKQAIRNVTIKRCQIIYGGSTYDLESDGKGKVSVEKVKNTSVQTNNELAGALHHLKH
ARIRYYVKCVQEAVYSIIQIAGAAFVTTRIARRMNIQELWSKPQLDQNESETKEEAPK
SEDDEFIISSKDIKEEGKKGKNKTGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKYS
IEEYLQDRDRYYEELAIAKATEEDFCEEEEIKIRQRIFRPTRKQRKEERATLGLVTGS
EIRKRNPDDFKPKGKLWADDNRSVDYNEKLDFEAPPSIWSRIVSFGSGWGFWVSPSLF
ITSTHVIPAGITEVFGVPIKQIQIHKSGEFCRFRFPKPIRTDVTGMILEEGAPEGTVA
TVLIKRPTGELMPLAARMGTHATMKIQGRMVGGQMGMLLTGSNAKGMDLGTTPGDCGC
PYIYKRGNDYIVIGVHTAAARGGNTVICATQGSEGEATLEGGDDKGTYCGAPILGPGG
APKLSTKTKFWRSSNTPLPPGTYEPAYLGGRDPRVKGGPSLQQVMRDQLKPFTEPRGK
PPRPSVLEAAKQTIINVLEQTLDPPQKWTYAQACASLDKTTSSGHPHHVRKNEFWNGE
TFTGKLADQASKANLMFEEGKHMTPVYTAALKDELVKTEKIYGKIKKRLLWGSDLSTM
IRCARSFGGLMDEMKAHCISLPVRVGMNMNEDGPIIFEKHSRYKYHYDADYSRWDSTQ
QRAVLAAALEIMVRFSAEPQLAQIVAEDLLAPSVVDVGDFKITINEGLPSGVPCTSQW
NSIAHWLLTLCALSEVTKLSPDIIQANSMFSFYGDDEIVSTDIKLDPEQLTAKLKEYG
LKPTRPDKTEGPLIISEDLNGLTFLRRTVTRDPAGWFGKLDQSSILRQMYWTRGPNHE
DPNETMIPHSQRPIQLMALLGEASLHGPSFYSKISKLVITELKEGGMDFYVPRQEPMF
RWMRFSDLSTWEGDRNLAPNFVNEDGVE"
mat_peptide <1..988
/gene="ORF1"
/product="p48"
mat_peptide 989..2086
/gene="ORF1"
/product="NTPase"
mat_peptide 2087..2617
/gene="ORF1"
/product="p22"
mat_peptide 2618..3016
/gene="ORF1"
/product="VPg"
mat_peptide 3017..3559
/gene="ORF1"
/product="Pro"
mat_peptide 3560..5089
/gene="ORF1"
/product="RdRp"
gene 5073..6701
/gene="ORF2"
CDS 5073..6701
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="WVN22389.1"
/translation="MKMASNDAAPSTDGAAGLVPESNNEVMALEPVAGAALAAPVTGQ
TNIIDPWIRANFVQAPNGEFTVSPRNAPGEVLLNLELGPELNPYLAHLARMYNGYAGG
MEVQVMLAGNAFTAGKLVFAAVPPHFPVENLSPQQITMFPHVIIDVRTLEPVLLPLPD
VRNNFFHYNQKDDPKMRIVAMLYTPLRSNGSGDDVFTVSCRVLTRPSPDFDFTYLVPP
TVESKTKPFTLPILTLGELSNSRFPVSIDQMYTSPNEIISVQCQNGRCTLDGELQGTT
QLQVSGICAFKGEVTAHLHDNDHLYNVTITNLNGSPFDPSEDIPAPLGVPDFQGRVFG
IISQRDKHNSPGHNEPANRGHDAVVPTYTAQYTPKLGQIQIGTWQTDDLTVNQPVKFT
PVGLNDTEHFNQWVVPRYAGALNLNTNLAPSVAPVFPGERLLFFRSYIPLKGGYGNPA
IDCLLPQEWVQHFYQEAAPSMSEVALVRYINPDTGRALFEAKLHRAGFMTVSSNTSAP
VVVPANGYFRFDSWVNQFYSLAPMGTGNGRRRVQ"
gene 6701..7480
/gene="ORF3"
CDS 6701..7480
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="WVN22390.1"
/translation="MAGAFVAGLAGDVLSNGLSSLINAGANAINQRAEFDFNQKLQQN
SFNHDKEMLQAQIQATKQLQADMMAIKQGVLTAGGFSPADAARGAVNAPMTQALDWNG
TRYWAPNSMRTTSYSGKFTSTAPVRQADFQHTQSRPSSGSSVSSFATQSSRPTLTTTT
GSSHGTASSNSTRSTSLSQSTVSRATSRTSEWVRDQNRNLEPYMHGALQTAFVTPPSS
RASDGTVSTVPKGVLDSWTPAFNTRRQPLFAHLRKRGESQA"
ORIGIN
1 ggcgtctaac gacgctaccg ttgccgttgc ttgcaacaac aacaacgaca aagaaaaatc
61 ttcaggtgaa ggcttattca caaatatgtc ttccacctta aagaaagccc tcggggctag
121 gcccaaacag cctgccccga gagacaaacc acaaaagccc ccaagaccac caactcccga
181 gttggttaag aggatacccc ctcctccacc taacggcgaa gaagaagaag aaccagtcat
241 taggtatgag gtcaagagtg ggatctctgg cctgcccgag ctcacaacag tcccccaacc
301 ggacgtggcc aacacagcat tcagtgttcc accactgagc ttgagagaaa acagggaggc
361 caaggagccg ctaacagggg caatattaga gatgtgggat ggagagatat accactatgg
421 cctgtacgtg gagaaaggct tagtgttggg tgtgcacaaa ccacctgcag ccataagcat
481 ggcaagagtg gagctgacgc cgttgtcatt gtactggcgt gtggtgtaca ctccccaata
541 cctcatctcc cctgaaaccc tcaggaggct caacggagag gcattccctt acaccgcctt
601 tgacaacaac tgctatgcct tttgctgctg ggtgttagac ctcaatgact catggcttag
661 caggaggatg atacaaagga caacgggctt cttcagacct taccaagagt ggaacagaaa
721 acccctgcct accatggatg actccaaaat taagaaggta gcaaatatat tcctatgttc
781 attgtccaca ttattcacca gacccataaa agacctcata ggaaaaatca aaccattgaa
841 cgtactgaat atcctggcaa cgtgtgactg gacttttgcc ggaatagtgg agtctctgat
901 attacttgct gaactcttcg gagttttctg gacaccccca gatgtgtctg ctatgatcgc
961 tcccttactc ggtgactacg agttgcaagg gccagaagac ctcgccgttg aactcgtgcc
1021 cgtggtaatg ggggggattg gtttggtgct gggattcacc aaagagaaaa ttggcaaaat
1081 gttgtcctca gcagcatcaa cactcagggc ttgcaaagat cttggtgcct atggcttgga
1141 gatactcaaa ttggtcatga agtggttctt cccaaagaaa gaggaggcca atgagctagc
1201 tatggtgagg gccatagagg atgctgtatt agaccttgag gcaatagaaa ataaccacat
1261 gacaaccctg ttgaaagaca aagacagctt agcaacatac atgaaaacac tggacatgga
1321 ggaggagaaa gccaggaggt tgtccacaaa atctgcatcc cctgacatag ttgggacaat
1381 caacgctctg ctggctcgaa tagcagcggc caggtcatta gtccacaggg ccaaggaaga
1441 gctatctagt aggataaggc cagtggttgt tatgatatct ggcaagccag gaataggcaa
1501 aactcatctg gccagggagg tggcaagaaa ggtggcatcc actctcacag gagatcaaag
1561 agtcggactc ataccacgaa acggtgtgga ccattgggat gcatacaaag gtgagagagt
1621 cgtgctgtgg gacgactatg gcatgagtaa ccctattcat gatgctcttc gcatacaaga
1681 attggctgat acgtgtcccc tcaccttaaa ttgtgacaga attgaaaata agggaaaagt
1741 ttttgacagt gaagtcataa taattacaac aaaccttgcc aatccagccc cacttgatta
1801 tgtcaacttt gaggcctgtt ccaggagaat tgattttctg gtgtacgctg aggcaccaga
1861 agtagaaaag gcaaaacggg actttcctgg tcagccagat atgtggaagg acgccttcaa
1921 gccggacttt tcacacatca agctacagct tgcaccccag ggcggcttcg acaagaatgg
1981 caacacccca catgggaaag gagtgatgaa gaccctcact accggttctc tgattgcccg
2041 tgcatcaggc ctactgcatg agaggatgga tgaatttgaa ctccaaggcc ccacaatcac
2101 cacctttaat ttcgaccgaa acagaatcac ggcattcaga caattggctg cagaaaacaa
2161 gtatggattg gtggatacca tgaaagttgg caatcaatta aaaggagtga aaaccatgga
2221 agaactcaaa caagcaatca ggaatgtgac catcaagagg tgccagatca tctacggtgg
2281 ttccacgtat gaccttgaat ctgatggcaa gggcaaagtt tcggtggaaa aggtcaagaa
2341 cacctctgta cagaccaata acgagttggc tggggccctg catcatctca aacatgcccg
2401 aatcaggtac tatgtcaaat gtgtgcaaga agcagtctat tccatcatac aaattgccgg
2461 cgctgcgttt gtcaccacac gcatcgcacg ccgtatgaac atacaagaac tctggtcgaa
2521 gccacaacta gatcaaaatg aatcagagac taaggaagag gcccccaagt cagaagatga
2581 cgagttcatc atatcttcta aggacatcaa ggaggaagga aagaagggca aaaacaaaac
2641 tggccgtggc aagaaacaca ctgcattctc cagcaagggc ctgagcgatg aggagtatga
2701 tgagtacaag aggataagag aagagagaaa tgggaagtac tctatagagg agtatcttca
2761 agacagagac aggtactatg aggagctcgc cattgccaag gccacggaag aagacttctg
2821 tgaagaggag gagatcaaaa tccgtcagag aattttccgc cccaccagga aacaaagaaa
2881 ggaagagagg gccacattag ggctagtaac aggttcagaa atcagaaaaa gaaaccctga
2941 tgacttcaaa cccaaaggga agctgtgggc cgatgacaac aggagcgttg actacaatga
3001 gaaactagac tttgaggccc ccccaagcat atggtctagg attgtgagct ttggctctgg
3061 ctggggcttc tgggtgtcac caagcctttt cataacatca actcatgtaa tccccgcagg
3121 cataacagaa gtatttggag tccccatcaa acaaattcag atccacaaat caggcgaatt
3181 ttgccgattc agattcccaa aaccaatcag aacagatgtg acaggaatga tcttggaaga
3241 aggtgcgcct gagggcaccg tggcaactgt gctcatcaaa cgccccaccg gagagctcat
3301 gcctcttgca gccagaatgg gaacacacgc aaccatgaaa attcaaggcc gcatggttgg
3361 cggacagatg ggtatgttgc tcactggatc aaatgctaaa ggaatggact tgggaacaac
3421 tcctggtgac tgtggctgtc cttacatcta taaaaggggc aatgactata tagtcattgg
3481 ggtgcacact gcagcagccc gtggtggaaa cactgtcatc tgtgccacac agggaagtga
3541 gggtgaggca actcttgagg gtggagatga caaaggaacg tactgtgggg cacccattct
3601 aggccctggg ggtgcaccaa aattgagcac caaaaccaaa ttttggaggt catcgaacac
3661 gccccttcca ccagggacat atgagcctgc ctacctcggt ggccgtgatc cgcgtgttaa
3721 gggtgggcct tccctgcagc aggtgatgag agaccagttg aagccattta ctgaacccag
3781 gggcaaacct ccaagaccaa gtgtattgga agcagccaaa caaaccatca tcaatgtcct
3841 cgaacaaacc ctggaccctc cacaaaaatg gacgtacgca caggcgtgcg cctcacttga
3901 caaaaccacc tccagcgggc acccccatca cgtccgaaag aatgaattct ggaatggtga
3961 gaccttcact ggtaaactgg cagaccaagc atcaaaagca aacctaatgt ttgaggaagg
4021 gaaacacatg acaccagtgt acacagcagc actcaaggac gagctagtca agactgagaa
4081 aatttatgga aagatcaaga agagactgct ctggggctct gacttgtcca ccatgatccg
4141 gtgcgctagg tcatttggtg ggcttatgga cgagatgaag gcacactgca tatcactccc
4201 agtccgagtt ggcatgaata tgaatgaaga tggcccaata atatttgaga aacattccag
4261 atataaatat cactatgatg cagactactc tcgttgggat tcaacacaac agagggcagt
4321 tctagcagca gccttggaaa tcatggtcag attctctgcc gaaccacaat tggcacaaat
4381 agtcgctgag gatctgctgg cccccagtgt agtagatgta ggagatttta aaatcacaat
4441 aaatgaaggg ctcccttctg gtgtgccatg cacttctcaa tggaactcca tcgcacactg
4501 gttgctaact ctctgtgcct tgtctgaagt caccaaacta tcccctgaca ttatacaggc
4561 aaattccatg ttctcatttt acggtgatga cgagattgtc agtaccgaca taaaattgga
4621 ccctgaacag ttaaccgcca aattgaagga gtacggcctg aaaccaaccc gcccagacaa
4681 aaccgaggga cccctgatta tcagtgaaga tttgaacggt ctcactttcc tccgaaggac
4741 ggtgactcgt gacccagctg gctggtttgg aaaactggac caaagctcaa ttttgaggca
4801 gatgtactgg actagaggac caaatcatga agaccccaat gagacaatga taccccattc
4861 ccaaagaccc atacagctca tggcactgct tggtgaagcc tctcttcacg gaccctcttt
4921 ctacagtaaa atcagtaaat tggttataac tgaactcaaa gaaggtggga tggactttta
4981 cgtgccaagg caggaaccca tgttcaggtg gatgaggttt tctgacttga gcacgtggga
5041 gggcgatcgc aatctggctc ccaattttgt gaatgaagat ggcgtcgaat gacgccgctc
5101 catctactga tggtgcagcc ggcctcgtgc cagaaagtaa caatgaggtc atggctcttg
5161 aacccgtggc tggtgccgcc ttggcagccc cggtcaccgg tcaaacaaat attatagacc
5221 cttggattag agcaaatttt gtccaggccc ccaatggtga atttacagtc tctccccgaa
5281 atgcccctgg tgaagtgcta ctgaatctag agttgggtcc agaattaaat ccttatctgg
5341 cacatttagc aagaatgtac aatgggtatg ccggtgggat ggaggtgcag gtcatgttgg
5401 ctgggaacgc gttcacagcc ggcaagttgg tcttcgccgc cgtgccaccc cacttcccgg
5461 ttgaaaacct tagcccacag caaatcacca tgttccctca tgtgatcata gatgttagaa
5521 ccttggaacc tgttttacta ccactccctg atgttaggaa taacttcttc cattataacc
5581 agaaagatga tcccaagatg agaattgtgg ctatgcttta tacccccctc aggtctaatg
5641 gttcaggtga tgatgtgttt acagtctcct gtagagtgtt gactagacct tcccctgact
5701 ttgacttcac atacctggtg ccaccaacag tggagtctaa aacaaagcca ttcaccctcc
5761 caatcctcac acttggggaa ctttccaact ctaggttccc agtgtccata gaccagatgt
5821 acaccagccc taatgaaatt atatcagtgc agtgtcaaaa tggtaggtgc acactggacg
5881 gggagctcca agggacaaca caactccaag tcagtggcat ttgtgctttc aaaggtgaag
5941 tgaccgccca cttgcatgac aatgatcacc tatataatgt caccatcaca aacttgaatg
6001 ggtccccttt tgatccctcc gaggatatcc ctgccccttt gggtgtacct gacttccagg
6061 ggagggtttt tggtatcatc tcccaaagag ataaacacaa tagtcctgga cataatgaac
6121 cagcaaacag gggacacgac gctgtggtcc ctacttacac agcacagtac actccaaaac
6181 ttggacaaat tcaaattggc acatggcaaa ctgacgacct tacagtcaac caaccagtca
6241 aattcacccc agttgggctc aatgacactg aacactttaa ccaatgggtt gtccctaggt
6301 atgctggtgc cctaaacctc aacacaaacc ttgccccttc tgttgctcca gtatttccag
6361 gagagcgtct gctcttcttc agatcataca ttcccctcaa gggcggttat ggaaacccag
6421 ccattgattg cctactacca caagagtggg tgcagcactt ctatcaggaa gcagcccctt
6481 caatgagtga ggtggccctc gtcagataca tcaacccgga cactggtcgg gcactgtttg
6541 aggccaagct ccacagagct ggtttcatga cagtctcgag caacaccagt gccccggtgg
6601 ttgtgcctgc caacgggtac ttcagatttg attcttgggt gaaccaattt tattctctcg
6661 cccccatggg aactgggaat gggcgtagaa gggttcaata atggctggag cttttgtagc
6721 tggtcttgca ggggacgtgc tcagcaatgg gcttagttca ttaatcaatg caggtgctaa
6781 tgcaataaat cagagggcag aatttgattt taatcaaaaa ttgcagcaaa attcttttaa
6841 tcatgataag gagatgttgc aggctcagat tcaggcaact aagcagctgc aggcagatat
6901 gatggctata aaacaagggg tcttgaccgc tggcggcttt tcccctgctg atgcagccag
6961 aggtgccgtg aacgcgccca tgacacaggc gctggattgg aatggcacaa ggtattgggc
7021 accaaactcc atgaggacca catcttattc tggaaaattc acatcaaccg ccccagtgag
7081 gcaggctgac ttccagcaca cccaaagccg gccttcgagt ggctcctctg tgtcttcctt
7141 tgccacccag tcttcaaggc caactctgac cacaaccact ggttcctcac atggcacagc
7201 ctcatcaaat tcaactcgca gcacaagcct ctcccaatca acggtctcca gagctacatc
7261 taggactagt gagtgggtta gagatcaaaa tagaaatttg gaaccctaca tgcatggtgc
7321 cttacagaca gcctttgtca ccccaccttc cagcagggca tctgacggga cagtctcaac
7381 cgtccctaaa ggtgttttgg actcctggac acctgcgttt aacacccgca ggcagccgct
7441 ttttgcacac ctccgtaaga ggggggagtc acaagcttag tgaaaaggtg
//