Typing tool
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Typing tool
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Complete norovirus genomes
| PP267299 | GII.2 | |
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| GII.P16 |
ORF1: 1..5098
ORF2: 5079..6707
ORF3: 6707..7486
LOCUS PP267299 7543 bp RNA linear VRL 09-FEB-2024
DEFINITION Norovirus GII isolate 2303204 nonstructural polyprotein (ORF1)
gene, partial cds; and VP1 (ORF2) and VP2 (ORF3) genes, complete
cds.
ACCESSION PP267299
VERSION PP267299.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7543)
AUTHORS Tao,L., Wang,X. and Ding,J.
TITLE Direct Submission
JOURNAL Submitted (04-FEB-2024) Department of Microbiology Laboratary,
Nanjing Municipal Center for Disease Control and Prevention
affiliated to Nanjing Medical University, Zizhulin No. 2, Nanjing,
Jiangsu 210003, China
COMMENT ##Assembly-Data-START##
Assembly Method :: BWA v. 0.7.17-r1188
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7543
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="2303204"
/isolation_source="stool sample"
/host="Homo sapiens"
/db_xref="taxon:122929"
/country="China"
/collection_date="20-Mar-2023"
/note="genotype: GII.2[P16]"
gene <1..5098
/gene="ORF1"
CDS <1..5098
/gene="ORF1"
/codon_start=2
/product="nonstructural polyprotein"
/protein_id="WVN22385.1"
/translation="KMASNDATVAVACNNNNDKEKSSGEGLFTNMSSTLKKALGARSK
QPVPRDKPQKPPRPPTPELVKRIPPPPPNGEEEEEPVIRYEVKSGISGLPELTTVPQP
DVANTAFSVPPLSLRENREAKEPLTGAILEMWDGEIYHYGLYVEKGLVLGVHKPPAAI
SMARVELTPLSLYWRVVYTPQYLISPETLRRLNGEAFPYTAFDNNCYAFCCWVLDLND
SWLSRRMIQRTTGFFRPYQEWNRKPLPTMDDSKIKKVANIFLCSLSTLFTRPIKDLIG
KIKPLNILNILATCDWTFAGIVESLILFAELFGVFWTPPDVSAMIAPLLGDYELQGPE
DLAVELVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFF
PKKEEANELAMVRAIEDAVLDLEAIENNHMTTLLKDKDSLATYMKTLDMEEEKARRLS
TKSASPDIVGTINALLARIAAARSLVHRAKEELSSRIRPVVVMISGKPGIGKTHLARE
VARKVASTLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRIQELADT
CPLTLNCDRIENKGKVFDSEVIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVE
KAKRDFPGQPDMWKDAFKPDFSHIKLQLAPQGGFDKNGNTPHGKGVMKTLTTGSLIAR
ASGLLHERMDEFELQGPTITTFNFDRNRIMAFRQLAAENKYGLMDTMKVGNQLKGVKT
MEELKQAIRNVTIKRCQIIYGGSTYDLESDGKGKVLVEKVKNTSVQTNNELAGALHHL
KHARIRYYVKCVQEAVYSIIQIAGAAFVTTRIARRMNIQELWSKPQLDQNESETKEEA
PKSEDDEFIISSKDIKEEGKKGKNKTGRGKKHTAFSSKGLSDEEYDEYKRIREERNGK
YSIEEYLQDRDRYYEELAIAKATEEDFCEEEEIKIRQRIFRPTRKQRKEERATLGLVT
GSEIRKRNPDDFKPKGKLWADDNRSVDYNEKLDFEAPPSIWSRIVSFGSGWGFWVSPS
LFITSTHVIPAGIAEAFGVPIKQIQIHKSGEFCRFRFPKPIRPDVTGMILEEGAPEGT
VATVLIKRPTGELMPLAARMGTHATMKIQGRMVGGQMGMLLTGSNAKGMDLGTTPGDC
GCPYIYKRGNDYIVIGVHTAAARGGNTVICATQGSEGEATLEGGDDKGTYCGAPILGP
GGAPKLSTKTKFWRSSNTPLPPGTYEPAYLGGRDPRVKGGPSLQQVMRDQLKPFTEPR
GKPPRPSVLEAAKQVIINVLEQTLDPPQKWTYAQACASLDKTTSSGHPHHVRKNEFWN
GETFTGKLADQASKANLMFEEGKHMTPVYTAALKDELVKTEKIYGKIKKRLLWGSDLS
TMIRCARSFGGLMDEMKAHCISLPVRVGMNMNEDGPIIFEKHSRYKYHYDADYSRWDS
TQQRAVLAAALEIMVRFSAEPQLAQIVAEDLLAPSVVDVGDFKITINEGLPSGVPCTS
QWNSIAHWLLTLCALSEVTKLSPDIIQANSMFSFYGDDEIVSTDIKLDPEQLTAKLKE
YGLKPTRPDKTEGPLIISEDLNGLTFLRRTVTRDPAGWFGKLDQSSILRQMYWTRGPN
HEDPNETMIPHSQRPIQLMALLGEASLHGPSFYSKISKLVITELKEGGMDFYVPRQEP
MFRWMRFSDLSTWEGDRNLAPNFVNEDGVE"
mat_peptide <1..994
/gene="ORF1"
/product="p48"
mat_peptide 995..2092
/gene="ORF1"
/product="NTPase"
mat_peptide 2093..2623
/gene="ORF1"
/product="p22"
mat_peptide 2624..3022
/gene="ORF1"
/product="VPg"
mat_peptide 3023..3565
/gene="ORF1"
/product="Pro"
mat_peptide 3566..5095
/gene="ORF1"
/product="RdRp"
gene 5079..6707
/gene="ORF2"
CDS 5079..6707
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="WVN22386.1"
/translation="MKMASNDAAPSTDGAAGLVPESNNEVMALEPVAGAALAAPVTGQ
TNIIDPWIRANFVQAPNGEFTVSPRNAPGEVLLNLELGPELNPYLAHLARMYNGYAGG
MEVQVMLAGNAFTAGKLVFAAVPPHFPVENLSPQQITMFPHVIIDVRTLEPVLLPLPD
VRNNFFHYNQKDDPKMRIVAMLYTPLRSNGSGDDVFTVSCRVLTRPSPDFDFTYLVPP
TVESKTKPFTLPILTLGELSNSRFPVSIDQMYTSPNEIISVQCQNGRCTLDGELQGTT
QLQVSGICAFKGEVTAHLHDNDHLYNVTITNLNGSPFDPSEDIPAPLGVPDFQGRVFG
IISQRDKHNSPGHSEPANRGHDAVVPTYTAQYTPKLGQIQIGTWQTDDLTVNQPVKFT
PVGLNDTEHFNQWVVPRYAGALNLNTNLAPSVAPVFPGERLLFFRSYIPLKGGYGNPA
IDCLLPQEWVQHFYQEAAPSMSEVALVRYINPDTGRALFEAKLHRAGFMTVSSNTSAP
VVVPANGYFRFDSWVNQFYSLAPMGTGNGRRRVQ"
gene 6707..7486
/gene="ORF3"
CDS 6707..7486
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="WVN22387.1"
/translation="MAGAFVAGLAGDVLSNGLSSLINAGANAINQRAEFDFNQKLQQN
SFNHDKEMLQAQIQATKQLQADMMAIKQGVLTAGGFSPADAARGAVNAPMTQALDWNG
TRYWAPNSMRTTSYSGKFTSTAPVRQADFQHTQSRPSSGSSVSSFATQSSRPTLTTTT
GSSHGTASSNSTRSTSLSQSTVSRATSRTGEWVRDQNRNLEPYMHGALQTAFVTPPSS
RASDGTVSTVPKGVLDSWTPAFNTRRQPLFAHLRKRGESQA"
ORIGIN
1 gaagatggcg tctaacgacg ctaccgttgc cgttgcttgc aacaacaaca acgacaaaga
61 aaaatcttca ggtgaaggct tattcacaaa tatgtcttcc accttaaaga aagccctcgg
121 ggctaggtcc aaacagcctg tcccgagaga caaaccacaa aagcccccaa gaccaccaac
181 tcccgagttg gtcaagagga taccccctcc tccacctaac ggcgaagaag aagaagaacc
241 agtcattagg tatgaggtca agagtgggat ctctggcctg cccgagctca caacagttcc
301 ccaaccggac gtggccaaca cagcattcag tgttccacca ctgagcttga gggaaaacag
361 ggaggccaag gagccgctaa caggggcaat attagagatg tgggatggag agatatacca
421 ctatggcctg tacgtggaga aaggcttagt gttgggtgtg cacaaaccac ctgcagccat
481 aagcatggca agagtggagc tgacgccgtt gtcattgtac tggcgtgtgg tgtacactcc
541 ccaatacctc atctcccctg aaaccctcag gaggctcaac ggagaggcat tcccttacac
601 cgcctttgac aacaactgct atgccttttg ctgctgggtg ttagacctca atgactcatg
661 gcttagcagg aggatgatac aaaggacaac gggcttcttc agaccttacc aagagtggaa
721 cagaaaaccc ctgcctacca tggatgactc caaaattaag aaggtagcaa atatattcct
781 atgttcattg tccacattat tcaccagacc cataaaagac ctcataggaa aaatcaaacc
841 attgaacata ttgaatatcc tggcaacgtg tgactggact tttgccggaa tagtggagtc
901 tctgatatta tttgctgaac tcttcggagt tttctggaca cccccagatg tgtctgctat
961 gatcgctccc ttactcgggg actacgagtt gcaagggcca gaagacctcg ccgttgaact
1021 cgtgcctgtg gtaatggggg ggattggttt ggtgttggga ttcaccaaag agaaaattgg
1081 caaaatgttg tcctcagcag catcaacact cagggcttgc aaagatcttg gtgcctatgg
1141 cttggagata ctcaaattgg tcatgaagtg gttcttccca aagaaagagg aggccaatga
1201 gttagctatg gtgagggcca tagaggatgc tgtattagac cttgaggcaa tagaaaataa
1261 ccacatgaca accctgttga aagacaaaga cagcttagca acatacatga aaacactgga
1321 catggaggag gagaaagcca ggaggttgtc cacaaaatct gcatcccctg atatagttgg
1381 gacaatcaac gccctgctgg ctcgaatagc agcggccagg tcattagtcc acagggccaa
1441 ggaagagcta tctagtagga taaggccagt agttgtcatg atatctggca agccgggaat
1501 aggcaaaact catctggcca gggaggtggc aagaaaggtg gcatccactc tcacagggga
1561 tcaaagagtc ggactcatac cacgaaacgg tgtggaccat tgggatgcat acaaaggtga
1621 gagagtcgtg ctgtgggacg actatggcat gagtaaccct attcatgatg ctcttcgcat
1681 acaagaattg gctgatacgt gtcccctcac cttaaattgt gacagaattg aaaataaggg
1741 aaaagttttt gacagtgaag tcataataat tacaacaaac cttgccaatc cagccccact
1801 tgattatgtc aactttgagg cctgttccag gagaattgat ttcctagtgt acgctgaggc
1861 accagaagta gaaaaggcaa aacgggactt tcctggtcag ccagatatgt ggaaggacgc
1921 cttcaagccg gacttttcac acatcaagct acagcttgca ccccaaggcg gctttgacaa
1981 gaatggcaat accccacatg ggaaaggagt gatgaagacc ctcactaccg gttctctgat
2041 tgcccgtgca tcaggcctac tgcatgagag gatggatgaa tttgaactcc aaggccccac
2101 aatcaccacc tttaatttcg accgaaacag aatcatggca ttcagacaac tggctgcaga
2161 aaacaagtat ggattgatgg acaccatgaa agttggcaat caattaaaag gagtgaaaac
2221 catggaagaa ctcaaacaag caatcaggaa tgtgaccatc aagaggtgcc agatcatcta
2281 cggtggttcc acgtatgacc ttgaatctga tggcaagggc aaagttttgg tggaaaaggt
2341 caagaacacc tctgtacaga ccaataacga gttggctggg gccctgcacc acctcaaaca
2401 tgcccgaatc aggtactatg tcaaatgtgt gcaagaagca gtctattcca tcatacaaat
2461 tgccggcgct gcgtttgtca ccacgcgcat cgcacgccgc atgaacatac aagaactctg
2521 gtcgaagcca caactagatc aaaatgaatc agagaccaag gaagaggccc ccaagtcaga
2581 agatgacgag ttcatcatat cttctaagga catcaaggag gaaggaaaga aaggcaaaaa
2641 caaaactggc cgtggcaaga aacatactgc attctccagc aagggcttga gcgatgagga
2701 gtatgacgag tacaagagga taagagaaga gagaaatggg aagtactcta tagaggagta
2761 tcttcaagac agagacaggt actatgagga gctcgccatt gctaaggcca cggaagaaga
2821 cttctgtgaa gaggaggaga tcaaaatccg ccagagaatt ttccgtccca ccaggaaaca
2881 aagaaaggaa gagagggcca cattagggct agtaacaggt tcagaaatca gaaagagaaa
2941 ccctgatgac ttcaaaccca aaggaaagct gtgggccgat gacaacagga gtgttgacta
3001 caatgagaaa ctggactttg aggccccccc aagcatatgg tctaggattg tgagctttgg
3061 ctctggctgg ggcttctggg tgtcaccaag ccttttcata acatcaactc atgtaatccc
3121 cgcaggcata gcagaagcat ttggagtccc catcaaacaa atccagatcc acaaatcagg
3181 cgaattttgc cgattcagat tcccaaaacc aattagacca gatgtgacag gaatgatctt
3241 ggaagaaggt gcgcctgagg gcaccgtggc aactgtgctc atcaaacgcc ccaccggaga
3301 gctcatgcct cttgcagcca gaatgggaac acacgcaacc atgaaaattc aaggccgcat
3361 ggttggcgga cagatgggta tgttgctcac tggatcaaat gctaaaggaa tggacttggg
3421 aacaactcct ggtgactgtg gctgtcctta catctataaa aggggcaatg actatatagt
3481 catcggggta cacactgcag cagcccgtgg tggaaacact gtcatctgtg ccacacaggg
3541 aagtgagggt gaggcaactc ttgagggtgg agatgacaaa ggaacgtatt gtggggcacc
3601 cattctaggc cctgggggtg caccaaaatt gagcaccaaa accaaatttt ggaggtcatc
3661 gaacacgccc cttccaccag ggacatatga gcctgcctac ctcggtggcc gtgatccgcg
3721 tgttaagggt gggccttccc tgcagcaggt gatgagagac cagttgaagc catttactga
3781 acccaggggc aaacctccaa gaccaagtgt attggaagca gccaaacaag tcatcatcaa
3841 tgtcctcgaa cagaccctgg accctccaca aaaatggaca tacgcacagg cgtgcgcctc
3901 acttgacaaa accacctcca gcgggcaccc ccatcacgtc cgaaagaatg aattctggaa
3961 tggtgagacc ttcactggta aactggcaga ccaagcatca aaagcaaacc taatgtttga
4021 ggaagggaaa cacatgacac cagtgtacac agcagcactc aaggacgagc tagtcaagac
4081 tgagaaaatt tatggaaaga tcaagaagag actgctttgg ggctctgact tgtccaccat
4141 gatccggtgc gctaggtcat ttggtgggct tatggacgag atgaaggcac actgcatatc
4201 actcccagtc cgggttggca tgaatatgaa tgaagatggc ccaataatat ttgagaaaca
4261 ttccagatac aaatatcact atgatgcaga ctactctcgt tgggattcaa cacaacagag
4321 ggcagttcta gcagcagcct tggaaatcat ggtcagattc tctgcagaac cgcaattggc
4381 acaaatagtc gctgaggatc tgctggcccc tagtgtggta gatgtaggag actttaaaat
4441 cacaataaat gaagggctcc cttctggtgt gccatgcact tctcaatgga actccatcgc
4501 acactggctg ctaactctct gtgccttgtc cgaagtcacc aaactatccc ctgacattat
4561 acaggcaaat tccatgttct cattttacgg tgatgacgag attgtcagta ccgatataaa
4621 attggaccct gaacagctaa ccgccaaatt gaaggagtac ggcctgaaac caacccgccc
4681 agacaaaacc gagggacccc tgattatcag tgaagatttg aacggtctca ctttcctccg
4741 aaggacggtg actcgtgacc cagctggctg gtttggaaaa ctggaccaaa gctcaatttt
4801 gaggcagatg tactggacta gaggaccaaa tcatgaagac cccaatgaga caatgatacc
4861 ccattcccaa agacccatac agctcatggc actgcttggt gaagcctccc ttcacggacc
4921 ctctttctac agtaaaatca gtaaattggt tataactgaa ctcaaagaag gtggtatgga
4981 cttttacgtg ccaaggcagg aacccatgtt cagatggatg aggttttctg acttgagcac
5041 gtgggagggc gatcgcaatc tggctcccaa ttttgtgaat gaagatggcg tcgaatgacg
5101 ccgctccatc tactgatggt gcagccggcc tcgtgccaga aagtaacaat gaggtcatgg
5161 ctcttgaacc cgtggctggt gccgccttgg cagccccggt caccggtcaa acaaatatta
5221 tagacccttg gattagagca aattttgtcc aggcccccaa tggtgaattt acagtttctc
5281 cccgaaatgc ccctggtgaa gtgctactga atctagagtt gggtccagaa ttaaatcctt
5341 atctggcaca tttagcaaga atgtacaatg ggtatgccgg tgggatggag gtgcaggtca
5401 tgttggctgg gaacgcgttc acagccggca agttggtctt cgccgccgtg ccaccccact
5461 tcccggttga aaaccttagc ccacagcaaa tcaccatgtt ccctcatgtg atcatagatg
5521 tgagaacctt ggaacctgtt ttattaccac tccctgatgt taggaataac ttcttccatt
5581 ataaccagaa agatgatccc aagatgagaa ttgtggctat gctttatacc cccctcaggt
5641 ctaatggttc aggtgatgat gtgtttacag tctcctgtag agtgttgact agaccttccc
5701 ctgactttga cttcacatac ctggtgccac caacagtgga gtctaaaaca aagccattca
5761 ccctcccaat cctcacactt ggggaacttt ccaattctag gttcccagtg tccatagacc
5821 agatgtacac cagccctaat gaaattatat cagtgcagtg tcaaaatggt aggtgcacac
5881 tggacgggga gctccaaggg acaacacaac tccaagtcag tggcatttgt gctttcaagg
5941 gtgaagtgac cgcccacttg catgacaatg accacctata taatgtcacc atcacaaact
6001 tgaatgggtc cccttttgat ccctccgagg atatccctgc ccctttgggt gtgcctgact
6061 tccagggaag ggtttttggt atcatctccc aaagagataa acacaatagt cctggacata
6121 gtgaaccagc aaacagggga cacgacgctg tggtccctac ttacacagca cagtacactc
6181 caaaacttgg acaaattcaa attggcacat ggcaaactga cgaccttaca gtcaaccaac
6241 cagttaaatt caccccagtt ggactcaatg acactgaaca ctttaaccaa tgggtggtcc
6301 ctaggtatgc tggtgcccta aacctcaaca caaaccttgc cccttctgtt gctccagtat
6361 ttccaggaga gcgtctgctc ttcttcagat catacattcc cctcaagggc ggttatggaa
6421 acccagccat tgattgccta ctaccacaag agtgggtgca gcacttctat caggaagcag
6481 ccccttcaat gagtgaggtg gccctcgtca gatacatcaa cccggacact ggtcgggcac
6541 tgtttgaggc caagctccac agagctggtt tcatgacagt ctcgagcaac accagtgccc
6601 cggtggttgt gcctgccaac gggtacttca gatttgattc ttgggtgaac caattttatt
6661 ctctcgcccc catgggaact gggaatgggc gtagaagggt tcaataatgg ctggagcttt
6721 tgtggctggt cttgcagggg acgtgctcag caatgggctt agttcattaa tcaatgcagg
6781 tgctaatgca ataaatcaga gggcagaatt cgattttaat caaaaattgc agcaaaattc
6841 ttttaatcat gataaggaga tgttgcaggc tcagattcag gcaactaagc agctgcaggc
6901 agacatgatg gctataaaac aaggggtctt gaccgctggc ggcttttccc ctgctgatgc
6961 agccagaggt gctgtgaacg cgcccatgac acaggcgctg gattggaatg gcacaaggta
7021 ttgggcacca aactccatga ggaccacatc ttattctgga aaattcacat caaccgcccc
7081 agtgaggcag gctgacttcc agcacaccca aagccggcct tcgagtggct cctctgtgtc
7141 ttcctttgcc acccagtctt caaggccaac tctgaccaca accactggtt cctcacatgg
7201 cacagcctca tcaaattcaa ctcgcagcac aagcctctcc cagtcaacgg tctccagagc
7261 cacatctagg actggtgagt gggttagaga tcaaaataga aatttggaac cctacatgca
7321 tggtgcctta cagacagcct ttgtcacccc accttccagc agggcatctg acgggacagt
7381 ctcaaccgtc cctaaaggtg ttttggactc ctggacacct gcgtttaaca cccgcaggca
7441 gccgcttttt gcacacctcc gtaagagggg ggagtcacaa gcttagtgaa aaggtgaaaa
7501 tttatttagg attagttgat tttacctttt aaaaaaaaaa aaa
//