Typing tool
|
Complete norovirus genomes
PP267298 | GII.17 | ||
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GII.P17 |
ORF1: 5..5113 ORF2: 5094..6716 ORF3: 6716..7495LOCUS PP267298 7503 bp RNA linear VRL 09-FEB-2024 DEFINITION Norovirus GII isolate 23030818 nonstructural polyprotein (ORF1), VP1 (ORF2), and VP2 (ORF3) genes, complete cds. ACCESSION PP267298 VERSION PP267298.1 KEYWORDS . SOURCE Norovirus GII ORGANISM Norovirus GII Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 7503) AUTHORS Tao,L., Wang,X. and Ding,J. TITLE Direct Submission JOURNAL Submitted (04-FEB-2024) Department of Microbiology Laboratary, Nanjing Municipal Center for Disease Control and Prevention affiliated to Nanjing Medical University, Zizhulin No. 2, Nanjing, Jiangsu 210003, China COMMENT ##Assembly-Data-START## Assembly Method :: BWA v. 0.7.17-r1188 Sequencing Technology :: Illumina ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..7503 /organism="Norovirus GII" /mol_type="genomic RNA" /isolate="23030818" /isolation_source="stool sample" /host="Homo sapiens" /db_xref="taxon:122929" /country="China" /collection_date="08-Mar-2023" /note="genotype: GII.17[P17]" gene 5..5113 /gene="ORF1" CDS 5..5113 /gene="ORF1" /codon_start=1 /product="nonstructural polyprotein" /protein_id="WVN22382.1" /translation="MKMASNDASAAVAGKNNNNDKEKSSSDSLFANMSVTFKKALGAR SKQPPPGETKQIQKPPRPPTPELVKKIPPPPPNGEDEPGIVYKVGEGVSGLPDLTTVA QPDAQNTAYSVPPLSQREVGEAKEPLPGSILEMWDGEIYHYGLYVERGHVLGVHKPPA AISLAKIEITPLSLYWRVVYTPQYLIDPGTLKNLSGETFPYTAFDNNCYAFCCWVLDL NDSWLSRRMIQRTTGFFKPYQDWNRKPLPTMDEPKIKKAANAVLCALSSLFTRPIKDI IGKLRPLNILNILATCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYEMQG PEDLAVELVPVVMGGIGLVLGFTKEKIGKMLSSAATTLRACKDLGSYGLEILKLVMKW FFPKKEEANELAMVRAIEDAVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARK LSTKSASPDIVGTINALLARIAAARSLVHKAKEELSSRQRPVVVMISGRPGIGKTHLA RELAKKVASTLSGDQRIGLVPRNGVDHWDAYKGERVVLWDDYGMSNPIQDALRLQELA DTCPLTLNCDRIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYADAPD IEKAKRDFPGQPDMWKDHFRPDFSHIKLQLAPQGGFDKNGNTPHGKGVVKSLTIGSLI ARASGLLHERMDEFELQGSDLPTFNFDRNKVAAFRQLAAENKYGLMDTLRVGNQLKSV KTLDELKQAIKNISIKKCQIVYNGCTYAMESDGRGKVVVEKVQNATVQTNNELVGALH HLRSARIRYYVKCFQEAIYSLLQIAGAAFVTSRIVRRMNISNLWSKPPIEEGDEPEDR GGCPKPRDEDDLTIDSRDIKVEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREE RNGKYSIEEYLQDRDRYYEELAIAKATEEDFCEEEEIKIRQRIFRPTRKQRKEERATL GLVTGSEIRKRNPDDFKPKGKLWADDNRSVDYNERIDFEAPPSVWSRIVNFGTGWGFW VSPSLFITSTHVIPKGITEAFGVPINQIQIHKSGEFCRLRFPKPIRPDVSGMILEEGA PEGTVVSILIKRTTGELMPLAVRMGTHATMKIQGRTVGGQMGMLLTGSNAKGMDLGTT PGDCGCPYIYKRGNDLVVIGVHTAAARGGNTVICATQGSEGEATLEGDDNKGTYCGAP ILGPGNAPKLSTKTKFWRSSNAPLPPGTYEPAYLGGRDPRVKGGPSLQQVMRDQLKPF TEPRGKPPNPNVLESAKKTIINVLEQTIDPPQKWSYAQACASLDKTTSSGYPHHVRKN DYWSGESFTGKLADQASKANLMYEEGKHMQPVYTAALKDELVKTDKIYGKIKKRLLWG SDLSTMIRCARAFGGLMDEFKANCITLPIRVGMNMNEDGPIIFEKHSRYRYHYDADYS RWDSTQQRAVLEAALEIMVRFSAEPQLAQIVAEDLLSPSVVDVGDFKIAINEGLPSGV PCTSQWNSIAHWLLTLCALSEVTGLGPDIIQANSMYSFYGDDEIVSTDIKLDPEKLTA KLKEYGLKPTRPDKTEGPLVISEDLNGLTFLRRTVTRDPAGWFGKLDQNSILRQLYWT RGPNHEDPSETMIPHAQRPVQLMALLGESSLHGPSFYSKVSKLVISELKEGGMDFYVP RQESMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE" mat_peptide 5..1003 /gene="ORF1" /product="p48" mat_peptide 1004..2101 /gene="ORF1" /product="NTPase" mat_peptide 2102..2638 /gene="ORF1" /product="p22" mat_peptide 2639..3037 /gene="ORF1" /product="VPg" mat_peptide 3038..3580 /gene="ORF1" /product="Pro" mat_peptide 3581..5110 /gene="ORF1" /product="RdRp" gene 5094..6716 /gene="ORF2" CDS 5094..6716 /gene="ORF2" /note="major capsid protein" /codon_start=1 /product="VP1" /protein_id="WVN22383.1" /translation="MKMASNDAAPSNDGAAGLVPEGNNETLPLEPVAGAAIAAPVTGQ NNIIDPWIRTNFVQAPNGEFTVSPRNSPGEILLNLELGPDLNPYLAHLSRMYNGYAGG VEVQVLLAGNAFTAGKILFAAVPPNFPVEFLSPAQITMLPHLIVDVRTLEPIMIPLPD VRNTFFHYSNQPNSRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPTPDFEFTYLVPP SVESKTKPFSLPILTLSELTNSRFPVPIDSLFTAQNNVLQVQCQNGRCTLDGELQGTT QLLPTGICAFRGRVTAQINQRDRWHMQLQNLNGTTYDPTDDVPAPLGTPDFKGVVFGM VSQRNVGNDAPGSTRAQQAWISTYSPQFVPKLGSVNLRISNNDDFQFQPTKFTPVGVN DDDDDHPFRQWELPNYSGELTLNMNLAPPVAPNFPGEQLLFFRSFVPCSGGYNQGIID CLIPQEWIQHFYQESAPSQSDVALIRYVNPDTGRTLFEAKLHRSGYITVAHSGDYPLV VPANGHFRFDSWVNQFYSLAPMGTGNGRRRAQ" gene 6716..7495 /gene="ORF3" CDS 6716..7495 /gene="ORF3" /note="minor structural protein; small basic protein" /codon_start=1 /product="VP2" /protein_id="WVN22384.1" /translation="MAGAFIAGLAGDMLTSSVGSLVNAGANAINQKIDFENNKQLQSA SFQHDKEMLQAQVRATKQLQSEMIALKQGVLAAGGFSPTDAARGSIGAPMTKVLDWSG TRYWAPNSTKTTGYSGQFTSSPVHMPSPNAPQSKPAKPRSLAPSSSSSSIYSMYTQST HLTSGSSSNASSASTKLTNLSSGSSQNRTAEWVNQQRSLSPFMSGALNISHVTPPSSR ASSSGTVSTVPKEVLDSWTSAFNTHRQPLFAHLRVRGESRV" ORIGIN 1 gtgaatgaag atggcgtcta acgacgcttc cgctgccgtt gctggcaaaa acaacaacaa 61 cgacaaggaa aaatcttcaa gtgacagctt gtttgctaat atgtctgtca cttttaagaa 121 agccctcggg gcgcggtcta aacaaccgcc cccgggagaa acaaaacaaa tacaaaaacc 181 accaaggcca ccgacaccgg aattggtgaa gaaaatacct ccacccccac ccaatggcga 241 ggacgaacca gggatagtgt acaaggtggg agagggtgtg tctgggctgc ccgacctaac 301 aactgtggca caacctgacg cacaaaacac agcttatagt gttcccccac ttagccagag 361 agaagtcggc gaagctaaag aaccgctgcc tggctccatt ctggaaatgt gggatggtga 421 gatctaccac tatgggctgt atgttgagcg ggggcatgtg ctcggagtac acaaaccacc 481 tgctgcaata agcctcgcca aaattgaaat aacaccgttg tctctctact ggagagtggt 541 ctacactccc cagtatttga tagatccagg aactctcaag aacttgagtg gagagacttt 601 cccatacacg gcctttgata acaactgtta tgccttctgt tgctgggtcc tagacctcaa 661 cgactcctgg cttagcagga gaatgatcca aagaacaact ggatttttca aaccttatca 721 ggattggaac agaaaaccct taccaaccat ggatgaaccg aaaatcaaga aggccgcgaa 781 tgctgtctta tgcgctctct cctcactctt cactagaccc attaaggaca tcattgggaa 841 gcttagacca ctgaacattc ttaatatact ggcaacctgc gattggactt ttgcaggcat 901 agtggaatcc ttgatccttc ttgctgaact ctttggggtg ttctggacac ccccagatgt 961 gtctgcgatg attgctccct tactcggtga ctacgagatg cagggccccg aagacctggc 1021 cgtggaactt gtgcccgtgg tgatgggagg aataggtttg gtgttaggat tcaccaaaga 1081 aaagatcggc aagatgcttt cgtcagctgc gaccacactt agggcctgca aggatctagg 1141 atcttatgga ttggagatac tcaaattggt catgaagtgg ttcttcccca agaaggagga 1201 ggctaacgaa ctagccatgg taagggccat tgaggatgca gtcctggatt tggaggcaat 1261 agaaaacaat catatgacca cccttctcaa ggataaagac agcctggcca catacatgag 1321 gactcttgac ttggaagaag agaaagcaag gaaactgtca accaaatcgg cgtcacctga 1381 catcgtgggt acaataaacg cattgttggc taggatagca gccgccaggt cactggtcca 1441 caaggctaag gaggagctct cgagcagaca gagacctgtt gttgtaatga tatcaggtag 1501 accaggtata ggaaagaccc atctggccag agagctagcc aagaaagttg cgtcaacact 1561 gtcaggcgac caaaggattg gactggtgcc taggaatggc gtcgaccatt gggacgccta 1621 caagggagaa agggtggtcc tgtgggatga ttatggtatg agcaacccta tacaagacgc 1681 actgaggctc caagaattgg ctgacacctg tcctctgacc ctaaattgtg ataggattga 1741 aaataaagga aaagtgttcg acagtgatgc cataattata acaaccaacc ttgcaaaccc 1801 agcaccacta gactatgtca actttgaggc ctgctctaga cgcatagact tcttggtgta 1861 tgcagacgca cctgacattg agaaggctaa gcgtgatttc cctggccaac cagatatgtg 1921 gaaagatcat tttagaccag acttctcaca cattaaactt cagctggcac cacagggagg 1981 ttttgacaaa aatggcaaca ccccacatgg caaaggtgtg gtaaagtccc tgacgattgg 2041 ttctctgatc gccagggcct ccggcttgct ccacgagaga atggatgaat tcgagctcca 2101 aggctctgac ctgccaacct tcaattttga ccgcaacaaa gtcgccgcct tcagacaatt 2161 agcagctgaa aacaaatatg gtcttatgga cacattgagg gtcggcaacc aactgaaaag 2221 tgttaagacc ctggatgagc tgaagcaggc cataaagaac atcagtatca agaagtgtca 2281 gatagtgtat aatggatgca cctatgccat ggaatctgat gggaggggca aggttgtggt 2341 tgagaaggta caaaacgcaa cagttcaaac caacaatgaa cttgtagggg cgctccacca 2401 cctgagatcc gcaaggataa gatactatgt taaatgtttt caagaagcca tttactctct 2461 actccaaatt gctggtgcag cctttgtcac ctcacgcatc gtgaggcgca tgaacatatc 2521 aaacctctgg tcgaagccac ccatcgagga gggtgacgag cctgaagaca gaggaggatg 2581 ccccaagccc agggatgaag atgacctcac tattgactct agagacatta aagtggaagg 2641 gaagaagggc aagaacaagt ctggccgggg caagaaacac acagccttct cttccaaggg 2701 cctcagtgat gaagagtacg atgagtacaa gagaatcaga gaggagagga atggcaaata 2761 ctcaatagag gaatacctcc aagataggga cagatactat gaagagcttg ccattgctaa 2821 ggccactgag gaggacttct gtgaggagga ggagatcaaa atacgccaga gaatcttccg 2881 acccaccagg aagcagcgga aagaggaaag ggccacgctt gggcttgtca caggatcgga 2941 aatcagaaag aggaatccag atgactttaa accaaaagga aaattgtggg ctgatgacaa 3001 caggagcgtg gattacaatg agaggataga ttttgaggct cccccgagtg tttggtctag 3061 gatagtcaac tttggcacag gctggggatt ctgggtttct ccaagtctct ttataacttc 3121 aacacacgtc ataccaaaag gaatcactga ggcctttgga gtgcccataa accaaatcca 3181 aattcacaaa tctggagaat tttgccgctt gcggtttcca aagccaatta ggccagacgt 3241 gagtgggatg atcttggaag agggcgcccc tgaaggcact gttgtgtcta ttctcatcaa 3301 aaggacaaca ggggagctga tgcctcttgc agtcagaatg gggactcatg ccacaatgaa 3361 aatccaaggt agaacggtgg gtggtcagat gggtatgctt ctcactggct caaatgccaa 3421 aggcatggat ctaggcacaa cgccaggtga ctgcggatgt ccatacatat acaaaagggg 3481 caatgacctt gtggtcattg gggtgcacac tgcagcagct cgtggaggca acacggtcat 3541 atgtgccaca cagggaagtg agggtgaagc cactcttgaa ggagatgaca acaagggtac 3601 ctattgtgga gcccccattt tgggacctgg caatgcacca aaactgagca caaagacaaa 3661 attctggaga tcctctaacg caccgcttcc cccaggtact tatgaaccag cataccttgg 3721 tgggagagac ccgcgcgtga agggaggccc atctctgcag caagttatga gagatcaact 3781 caaacctttt acagagccca gagggaagcc accaaaccca aatgtcttag agtcagcaaa 3841 gaaaactatc atcaatgttc tggaacaaac cattgacccc cctcaaaagt ggtcatatgc 3901 ccaagcttgt gcatccctcg acaagacaac ctccagtgga tacccgcacc acgtccggaa 3961 gaatgactac tggagtggtg aatccttcac aggaaaactt gcagatcagg cttcaaaagc 4021 aaatctcatg tatgaggaag gcaagcacat gcaaccagtt tacaccgcag cactcaaaga 4081 cgagctcgtg aaaactgaca aaatttatgg caaaatcaag aaaagactcc tgtggggctc 4141 cgacctctcc acaatgattc gatgcgccag agcatttggt ggtctcatgg atgaattcaa 4201 agcaaattgt attacactcc ctatcagagt tggtatgaat atgaatgaag atggtcccat 4261 aatatttgag aaacactcca ggtacaggta ccactatgat gctgattact cccgctggga 4321 ctccacacaa cagcgggcag tgctggaagc ggcacttgaa atcatggtga gattttctgc 4381 tgagccacag ctggcacaaa tagtggcaga ggacctgctg tcaccaagtg tggttgatgt 4441 gggcgatttc aaaatcgcta tcaatgaagg cttaccatct ggcgtgcctt gcacctcaca 4501 atggaattct attgcccact ggttactcac cttgtgtgcc ctttctgaag tgacaggatt 4561 aggtcctgac atcatacaag ctaactccat gtactctttc tatggtgatg atgagattgt 4621 gagcacagac ataaaattgg acccagagaa attgaccgca aagctcaaag agtatggcct 4681 taaacccact cggcccgaca aaactgaggg gccgttggtg attagtgagg acctgaatgg 4741 gttgactttc ctccgccgaa cagtcacccg tgatccagca ggttggtttg gaaagttgga 4801 ccaaaactcc atcctcaggc agttgtactg gacaagagga cccaaccatg aagaccccag 4861 tgagaccatg ataccacacg cacaaagacc tgtgcagctc atggcactac taggagagtc 4921 ctccctacat ggaccctcat tttacagcaa ggttagcaaa ttagtaatat ctgaacttaa 4981 agagggagga atggattttt atgtgcccag acaagagtca atgttcagat ggatgaggtt 5041 ctcagatcta agcacatggg agggcgatcg caatctggct cccagttttg tgaatgaaga 5101 tggcgtcgaa tgacgccgct ccatctaatg atggtgctgc tggtctcgta ccagagggca 5161 acaacgagac ccttccccta gaaccagttg cgggcgcagc tatagccgca cccgtcactg 5221 gccaaaataa tataattgac ccctggatta gaacaaattt tgtgcaagca ccaaatggag 5281 agttcacagt gtcacccaga aactctcctg gagaaatttt attaaattta gagttgggcc 5341 ctgatttgaa cccttatttg gctcatttgt caaggatgta caatgggtat gctggtggag 5401 tggaagttca ggttctcctg gcagggaacg cgttcactgc cggaaagatc ctcttcgccg 5461 ccgtcccgcc aaatttccca gtggaattct taagcccagc ccagatcaca atgctcccac 5521 atttaatagt agatgttagg actcttgagc caattatgat cccactccct gacgttagga 5581 atacattctt ccattatagt aaccagccta acagccgcat gagattagtg gctatgctct 5641 ataccccact cagatctaat ggttcaggtg atgatgtctt tactgtctct tgcagggttt 5701 tgactaggcc tactcctgat tttgagttca cttatttagt gccaccttct gttgaatcca 5761 aaactaagcc tttttcctta cctattttaa ccctttctga gctcacaaat tcgaggtttc 5821 cagtccccat cgattcgctt tttaccgccc agaataatgt gttgcaggtg cagtgtcaaa 5881 atggcaggtg tacacttgat ggcgagttac aaggcacaac ccagttgctc ccaactggca 5941 tctgcgcatt cagaggacgg gtgacagcac aaattaacca acgtgacagg tggcacatgc 6001 aactgcaaaa cctcaatggc acaacatatg acccaactga tgatgtgcca gccccgctgg 6061 gtacacctga cttcaagggc gtcgtgtttg ggatggtaag ccaaagaaat gtgggtaatg 6121 atgcgcctgg ctcaaccaga gcccaacagg cgtggatttc aacctatagc ccccaatttg 6181 tccccaaatt aggttctgtc aatctcagaa ttagtaataa tgatgatttc caattccagc 6241 cgacaaaatt cacaccagtg ggcgtcaatg atgacgatga tgaccacccg ttcagacagt 6301 gggaactacc aaactattca ggggagctta ccttgaatat gaatcttgcc cccccagttg 6361 ctccaaattt tcctggtgaa caactgttat tcttcagatc tttcgtgcca tgctcaggag 6421 gttacaacca aggtattata gattgtctta ttccccaaga atggatccaa catttctatc 6481 aggaatcagc accctcccag tcagacgtgg ccctaatcag gtatgtcaac cccgatacgg 6541 gacgtacact gtttgaagca aaattgcaca gatctggtta cattactgtg gctcactctg 6601 gagactaccc tcttgttgtt ccggctaatg gacactttag atttgattct tgggtaaatc 6661 agttttactc actcgcccca atgggaactg ggaatgggcg aaggagggct cagtaatggc 6721 tggggctttc attgcaggat tggcaggcga catgctcacg tcatctgtgg gctcccttgt 6781 gaacgcaggg gcaaacgcca tcaaccaaaa gatagacttt gaaaataaca aacaactcca 6841 gtctgcttcc tttcagcatg ataaagagat gctccaagcg caggtgaggg caaccaagca 6901 gctgcaatct gaaatgatag ccctaaaaca gggggttttg gccgcaggcg gcttttcccc 6961 cactgatgca gcacggggat ccattggtgc acccatgaca aaggtgcttg actggtctgg 7021 cactcgatac tgggcgccca attccacaaa gacaactggc tattcgggac aattcacctc 7081 ttcacctgtg catatgccta gcccaaatgc tccacaatca aaacctgcaa agcctaggtc 7141 tctagctcct tcctcttctt ctagtagtat ctacagtatg tacactcagt ctactcattt 7201 gacatctggc tcttctagta atgcttcttc tgcctccaca aaattgacaa atttaagctc 7261 tggctcctct caaaacagaa cagcagagtg ggtaaatcaa cagagaagtc ttagcccctt 7321 catgagtggc gcacttaaca tctcacatgt cacgccaccc tcaagtaggg cttccagttc 7381 tgggacggtc tcgaccgtgc ccaaggaagt tttggactcc tggacgtctg cgtttaacac 7441 acacagacag ccgctcttcg cacacctcag agtgaggggg gagtcacgtg tttagtgaaa 7501 aga //