Typing tool
|
|
|
|
|
|
Typing tool
|
Complete norovirus genomes
| PP267297 | GII.2 | |
|
|---|---|---|---|
| GII.P16 |
ORF1: 1..5095
ORF2: 5076..6704
ORF3: 6704..7471
LOCUS PP267297 7500 bp RNA linear VRL 09-FEB-2024
DEFINITION Norovirus GII isolate 2205217 nonstructural polyprotein (ORF1)
gene, partial cds; and VP1 (ORF2) and VP2 (ORF3) genes, complete
cds.
ACCESSION PP267297
VERSION PP267297.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7500)
AUTHORS Tao,L., Wang,X. and Ding,J.
TITLE Direct Submission
JOURNAL Submitted (04-FEB-2024) Department of Microbiology Laboratary,
Nanjing Municipal Center for Disease Control and Prevention
affiliated to Nanjing Medical University, Zizhulin No. 2, Nanjing,
Jiangsu 210003, China
COMMENT ##Assembly-Data-START##
Assembly Method :: BWA v. 0.7.17-r1188
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7500
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="2205217"
/isolation_source="stool sample"
/host="Homo sapiens"
/db_xref="taxon:122929"
/country="China"
/collection_date="21-May-2022"
/note="genotype: GII.2[P16]"
gene <1..5095
/gene="ORF1"
CDS <1..5095
/gene="ORF1"
/codon_start=2
/product="nonstructural polyprotein"
/protein_id="WVN22379.1"
/translation="MASNDATVAVACNNNNDKEKSSGEGLFTNMSSTLKKALGARPKQ
PAPRDRPQKPPRPPTPELVKRIPPPPPNGEEEEEPVIRYEVKSGISGLPELTTVPQPD
VANTAFSVPPLSLRENREAKEPLTGAILEMWDGEIYHYGLYVEKGLVLGVHKPPAAIS
MARVELTPLSLHWRVVYTPQYLISPETLRRLNGEAFPYTAFDNNCYAFCCWVLDLNDS
WLSRRMIQRTTGFFRPYQEWNRKPLPTMDDSKIKKVANIFLCSLSTLFTRPIKDLIGK
IKPLNILNILATCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPED
LAVELVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEIFKLVMKWFFP
KKEEANELAMVRAIEDAVLDLEAIENNHMTTLLKDKDSLATYMKTLDMEEEKARRLST
KSASPDIVGTINALLARIAAARSLVHRAKEELSSRIRPVVVMISGKPGIGKTHLAREV
ARKVASTLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRIQELADTC
PLTLNCDRIENKGKVFDSEVIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEK
AKRDFPGQPDMWKDAFKPDFSHIKLQLAPQGGFDKNGNTPHGKGVMKTLTTGSLIARA
SSLLHERMDEFELQGPTITTFNFDRNRITAFRQLAAENKYGLVDTMKVGNQLKGVKTM
EELKQAIRNVTIKRCQIIYGGSTYDLESDGKGKVLVEKVKNTSVQTNNELTGALHHLK
HARIRYYVKCVQEAVYSIIQIAGAAFVTTRIARRMNIQELWSKPQLDQNESETKEEAP
KSEDDEFIISSKDIKEEGKKGKNKTGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKY
SIEEYLQDRDRYYEELAIAKATEEDFCEEEEIKIRQRIFRPTRKQRKEERATLGLVTG
SEIRKRNPDDFKPKGKLWADDNRSVDYNEKLDFEAPPSIWSRIVSFGSGWGFWVSPSL
FITSTHVIPAGITEAFGVPIKQVQIHKSGEFCRFRFPKPIRTDVTGMILEEGAPEGTV
ATVLIKRPTGELMPLAARMGTHATMKIQGRMVGGQMGMLLTGSNAKGMDLGTTPGDCG
CPYIYKRGNDYIVIGVHTAAARGGNTVICATQGSEGEATLEGGDDKGTYCGAPILGPG
GAPKLSTKTKFWRSSNTPLPPGTYEPAYLGGRDPRVKGGPSLQQVMRDQLKPFTEPRG
KPPRPSVLEAAKQTIINVLEQTLDPPQKWTYAQACASLDKTTSSGHPYHVRKNEFWNG
ETFTGKLADQASKANLMFEEGKHMTPVYTAALKDELVKTEKIYGRIKKRLLWGSDLST
MIRCARSFGGLMDEMKAHCISLPVRVGMNMNEDGPIIFEKHSRYKYHYDADYSRWDST
QQRAVLAAALEIMVRFSAEPQLAQIVAEDLLAPSVVDVGDFKITINEGLPSGVPCTSQ
WNSIAHWLLTLCALSEVTKLSPDIIQANSMFSFYGDDEIVSTDIKLDPEQLTAKLKEY
GLKPTRPDKTEGPLIISEDLNGLTFLRRTVTRDPAGWFGKLDQSSILRQMYWTRGPNH
EDPNETMIPHSQRPVQLMALLGEASLHGPSFYSKISKLVITELKEGGMDFYVPRQEPM
FRWMRFSDLSTWEGDRNLAPNFVNEDGVE"
mat_peptide <1..991
/gene="ORF1"
/product="p48"
mat_peptide 992..2089
/gene="ORF1"
/product="NTPase"
mat_peptide 2090..2620
/gene="ORF1"
/product="p22"
mat_peptide 2621..3019
/gene="ORF1"
/product="VPg"
mat_peptide 3020..3562
/gene="ORF1"
/product="Pro"
mat_peptide 3563..5092
/gene="ORF1"
/product="RdRp"
gene 5076..6704
/gene="ORF2"
CDS 5076..6704
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="WVN22380.1"
/translation="MKMASNDAAPSTDGAAGLVPESNNEVMALEPVAGAALAAPVTGQ
TNIIDPWIRANFVQAPNGEFTVSPRNAPGEVLLNLELGPELNPYLAHLARMYNGYAGG
MEVQVMLAGNAFTAGKLVFAAVPPHFPVENLSPQQITMFPHVIIDVRTLEPVLLPLPD
VRNNFFHYNQKDDPKMRIVAMLYTPLRSNGSGDDVFTVSCRVLTRPSPDFDFTYLVPP
TVESKTKPFTLPILTLGELSNSRFPVSIDQMYTSPNEIISVQCQNGRCTLDGELQGTT
QLQVSGICAFKGEVTAHLHDNDHLYNVTITNLNGSPFDPSEDIPAPLGVPDFQGRVFG
IISQRDKHNSPGHNEPANRGHDAVVPTYTAQYTPKLGQIQIGTWQTDDLTVNQPVKFT
PVGLNDTEHFNQWVVPRYAGALNLNTNLAPSVAPVFPGERLLFFRSYIPLKGGYGSPA
IDCLLPQEWVQHFYQEAAPSMSEVALVRYINPDTGRALFEAKLHRAGFMTVSSNTSAP
VVVPANGYFRFDSWVNQFYSLAPMGTGNGRRRVQ"
gene 6704..7471
/gene="ORF3"
CDS 6704..7471
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="WVN22381.1"
/translation="MAGAFVAGLAGDVLSNGLSSLINAGANAINQRAEFDFNQKLQQN
SFNHDKEMLQAQIQATKQLQADMMAIKQGVLTAGGFSPADAARGAVNAPMTQALDWNG
TRYWAPNSMRTTSYSGKFTSTAPVRQADFLHTQSRPSSGSSVSSFATQSSRPTLTTTT
GSSHGTASSNSTRSTSLSQSTVSRTGEWVRDQNRNLEPYMHGALQTAFVTPPSSRASD
GTVSTVPKGVLDSWTPAFNTRRQPLFAHLRKRGESQA"
ORIGIN
1 gatggcgtct aacgacgcta ccgttgccgt tgcttgcaac aacaacaacg acaaagaaaa
61 atcttcaggt gaaggcttat tcacaaatat gtcttccacc ttaaagaagg ccctcggggc
121 taggcccaaa cagcctgccc cgagagacag accacaaaag cccccaagac caccaactcc
181 cgagttggtc aagaggatac cccctcctcc acctaacggc gaagaagaag aagaaccagt
241 cattaggtat gaggtcaaga gtgggatctc tggcctgccc gagctcacaa cagtccccca
301 accggacgtg gccaacacag cattcagtgt tccaccactg agcttgagag aaaacaggga
361 ggccaaggag ccgctaacag gggcaatatt agagatgtgg gatggagaga tataccacta
421 tggcctgtac gtggagaaag gtttagtgtt gggtgtgcac aaaccacctg cagccataag
481 catggcaaga gtggaactga cgccgttgtc attgcactgg cgtgtggtgt acactcccca
541 atacctcatc tcccctgaaa ccctcaggag gctcaacgga gaggcattcc cttacaccgc
601 ctttgacaac aattgctatg ccttttgctg ctgggtgtta gacctcaatg actcatggct
661 tagcaggagg atgatacaaa ggacaacggg cttcttcaga ccttaccaag agtggaacag
721 aaaacccctg cctaccatgg acgactccaa aattaagaag gtagcaaata tattcctatg
781 ttcattgtcc acattattca ccagacccat aaaagacctc ataggaaaaa tcaaaccatt
841 gaacatattg aatatcctgg caacgtgtga ctggactttt gccggaatag tggagtctct
901 gatattactt gctgaactct tcggagtttt ctggacaccc ccagatgtgt ctgctatgat
961 cgctccctta ctcggggact acgagttgca agggccagaa gacctcgccg ttgaactcgt
1021 gcctgtggta atggggggga ttggtttggt gttgggattc accaaagaga aaattggcaa
1081 aatgttgtcc tcagcagcat caacactcag ggcttgcaaa gatcttggtg cctatggctt
1141 ggagatattc aaattggtca tgaagtggtt cttcccaaag aaagaggagg ccaatgagct
1201 agctatggtg agggccatag aggatgctgt attagacctt gaggcaatag aaaataacca
1261 catgacaacc ctgttgaaag acaaagacag cttagcaaca tacatgaaaa cactggacat
1321 ggaggaggag aaagccagga ggttgtccac aaaatctgca tcccctgaca tagttgggac
1381 aatcaacgcc ctgctggctc gaatagcagc ggccaggtca ttagtccaca gggccaagga
1441 agagctgtct agtaggataa ggccagtagt tgttatgata tctggcaagc caggaatagg
1501 caaaactcac ctagccaggg aggtggcaag aaaggtggca tccacactta caggagatca
1561 aagagtcgga ctcataccac gaaacggtgt ggaccattgg gatgcataca aaggtgagag
1621 agtcgtgctg tgggacgact atggcatgag taaccctatt cacgatgctc ttcgcataca
1681 agaattggct gacacgtgtc ccctcacctt aaattgtgac agaattgaaa ataagggaaa
1741 agtttttgac agtgaagtca taataattac aacaaaccta gccaacccag ccccacttga
1801 ttatgtcaac tttgaggcct gttccaggag gattgatttc ctggtgtacg ctgaggcgcc
1861 agaagtagaa aaggcaaaac gggactttcc tggtcagcca gacatgtgga aggacgcctt
1921 caagccggac ttttcacaca tcaagctaca gcttgcaccc cagggcggct tcgacaagaa
1981 tggcaacacc ccacatggga aaggagtgat gaagaccctc actaccggtt ctctgattgc
2041 ccgtgcatca agcctactgc atgagaggat ggatgaattt gaactccaag gccccaccat
2101 caccaccttt aatttcgacc gaaacagaat cacggcattc agacaattgg ctgcagaaaa
2161 caagtatgga ttggtggata ccatgaaagt tggcaatcaa ttgaaaggag tgaaaaccat
2221 ggaagaactc aaacaagcaa tcaggaatgt gaccatcaag aggtgccaga tcatctacgg
2281 tggttccacg tatgaccttg aatctgatgg caagggcaaa gttttggtgg aaaaggtcaa
2341 gaacacctct gtacagacca ataacgagtt gactggggcc ctgcaccatc tcaaacatgc
2401 ccgaatcagg tactatgtca aatgtgtgca agaagcagtc tattccatca tacaaattgc
2461 cggcgctgcg tttgtcacca cgcgcatcgc acgccgcatg aacatacaag aactctggtc
2521 gaagccacaa ctagatcaaa atgaatcaga gactaaagaa gaggccccca agtcagaaga
2581 tgacgagttc atcatatcct ctaaagacat caaggaggaa ggaaagaagg gcaaaaacaa
2641 aactggccgt ggcaagaaac acactgcatt ctccagcaag ggcctgagcg atgaggagta
2701 tgacgagtac aagaggataa gagaagagag aaacgggaag tactctatag aggagtatct
2761 ccaagacaga gacaggtact atgaggagct cgccatcgcc aaggccacgg aagaagactt
2821 ctgtgaagag gaggagataa aaatccgtca aagaattttc cgccccacca ggaaacaaag
2881 aaaggaagag agggccacat tggggctagt aacaggttca gaaatcagaa aaagaaaccc
2941 tgatgacttc aagcccaaag ggaagctgtg ggccgatgac aataggagtg ttgactacaa
3001 tgagaaactg gactttgagg cccccccaag catatggtct aggattgtga gctttggctc
3061 tggctggggc ttctgggtgt caccaagcct tttcataaca tcaactcatg taatccccgc
3121 aggcataaca gaagcatttg gagtccccat caaacaagtt cagatccaca agtcaggcga
3181 attttgtcga ttcagattcc caaaaccaat tagaacagat gtgacaggaa tgatcttgga
3241 agaaggtgcg cctgagggca ccgtggcaac tgtgctcatc aaacgcccca ccggagagct
3301 catgcctctt gcagccagaa tgggaacaca cgcaaccatg aaaattcaag gccgcatggt
3361 tggcggacag atgggtatgt tgctcactgg atcaaatgct aaaggaatgg acttgggaac
3421 aactcctggt gactgtggct gtccttacat ctacaaaagg ggtaatgact atatagtcat
3481 tggggtgcac actgcagcag cccgtggtgg aaacactgtc atctgtgcca cgcagggaag
3541 tgagggtgag gcaactcttg agggtggaga tgacaaagga acgtactgtg gggcacccat
3601 tctaggccct gggggtgcac caaaattgag caccaaaacc aaattttgga ggtcatcgaa
3661 tacgcccctt ccaccaggaa catatgagcc tgcctacctc ggtggccgtg atccgcgtgt
3721 taagggtggg ccttccctgc agcaggtgat gagagaccag ctgaagccat ttactgaacc
3781 caggggcaaa cctccaagac caagtgtatt ggaagcagcc aaacaaacca tcatcaatgt
3841 cctcgaacaa accttggacc ctccacaaaa atggacgtac gcgcaggcgt gcgcctcact
3901 tgacaaaacc acctccagcg ggcaccccta tcacgtccga aagaatgaat tctggaatgg
3961 tgaaaccttc actggtaaac tggcagacca agcatcaaaa gcaaacctaa tgtttgagga
4021 agggaaacac atgacaccag tgtatacagc agcactcaag gacgagctag tcaaaactga
4081 gaaaatttat ggaaggatca agaagagact gctctggggc tctgacttgt ccaccatgat
4141 ccggtgcgct aggtcatttg gtgggcttat ggacgagatg aaagcacact gcatatcact
4201 cccagtccga gttggcatga atatgaatga agatggccca ataatatttg agaaacattc
4261 cagatataaa tatcactatg atgcagacta ctctcgttgg gattcaacac aacagagggc
4321 agttctagca gcagccttgg aaattatggt cagattctct gcagaaccac aattggcaca
4381 aatagtcgct gaggatctgc tggcccctag tgtagtagat gtaggagact ttaaaatcac
4441 aataaatgaa gggctccctt ctggtgtgcc atgcacttct caatggaact ccatcgcaca
4501 ctggctgcta actctctgtg ccttgtctga agtcaccaaa ctatcccctg acattataca
4561 ggcaaattcc atgttctcat tttacggtga tgacgagatt gtcagtaccg acataaaatt
4621 ggaccctgag cagttaaccg ccaaattgaa agagtacggc ctgaaaccaa cccgcccaga
4681 caaaaccgag ggacccctga ttatcagtga agatttgaac ggtctcactt tcctccgaag
4741 gacggtgact cgtgacccag ctggctggtt tggaaagctg gaccaaagtt caattttgag
4801 gcagatgtac tggactagag gaccaaatca tgaagacccc aatgagacaa tgatacccca
4861 ttcccaaaga cccgtacagc tcatggcact gcttggtgaa gcctctcttc acggaccctc
4921 tttctacagc aaaatcagta aattggtcat aaccgaactc aaagaaggtg ggatggactt
4981 ttacgtgcca aggcaggagc ccatgttcag gtggatgagg ttttctgact tgagcacgtg
5041 ggagggcgat cgcaatctgg ctcccaattt tgtgaatgaa gatggcgtcg aatgacgccg
5101 ctccatctac tgatggtgca gccggcctcg tgccagaaag taacaatgag gtcatggctc
5161 ttgaacccgt ggctggtgcc gccttggcag ccccggtcac cggtcaaaca aatattatag
5221 acccttggat tagagcaaat ttcgtccagg cccccaatgg tgaatttaca gtctctcccc
5281 gaaacgcccc tggtgaagtg ctactgaatc tagagttggg tccagaatta aatccttatc
5341 tggcacatct agcaagaatg tacaatgggt atgccggtgg gatggaggtg caggtcatgt
5401 tggctgggaa cgcgttcaca gccggcaagt tggtcttcgc cgccgtgcca ccccacttcc
5461 cggttgaaaa ccttagtcca caacaaatca ccatgttccc tcatgtgatc atagatgtga
5521 gaaccttgga acctgtttta ttaccactcc ctgatgttag gaataacttc tttcattata
5581 accagaaaga tgaccccaag atgagaattg tggctatgct ttataccccc ctcaggtcta
5641 atggttcagg tgatgatgtg tttacagtct cctgtagagt gttgactaga ccttcccctg
5701 actttgactt cacatacctg gtgccaccaa cagtggagtc taaaacaaag ccattcaccc
5761 tcccaatcct tacacttggg gaactttcca attctaggtt cccagtgtcc atagatcaga
5821 tgtacaccag ccctaatgaa atcatatcag tgcaatgtca aaatggtagg tgcacactgg
5881 acggggagct ccaagggaca acacaactcc aagtcagtgg tatttgtgct ttcaaaggtg
5941 aagtgaccgc ccacttacat gacaatgatc acctatataa tgtcaccatc acaaacttga
6001 atgggtcccc ttttgacccc tccgaggata tccctgcccc tttgggtgtg cctgacttcc
6061 agggaagggt ttttggtatc atctcccaaa gagataaaca caatagtcct ggacataatg
6121 aaccagcaaa caggggacac gacgctgtgg tccctactta cacagcacag tacactccaa
6181 aacttggaca aattcaaatt ggcacatggc aaactgacga ccttacagtc aaccaaccag
6241 tcaaattcac cccagttgga ctcaatgaca ctgaacactt taaccaatgg gttgtcccta
6301 ggtatgctgg tgccctaaac ctcaatacaa accttgcccc ttctgttgct ccagtatttc
6361 caggagagcg tctgctcttc ttcagatcat acattcccct taagggcggt tatggaagcc
6421 cagccattga ttgcctacta ccacaagagt gggtgcagca cttttatcag gaagcagccc
6481 cttcaatgag tgaggtggcc ctcgtcagat acatcaaccc ggacactggt cgggcactgt
6541 ttgaggccaa gctccacaga gctggtttca tgacagtctc tagcaacacc agtgccccgg
6601 tggttgtgcc tgccaacggg tacttcagat ttgattcttg ggtgaaccaa ttttattctc
6661 tcgcccccat gggaactggg aatgggcgca gaagggttca ataatggctg gagcttttgt
6721 agctggtctt gcaggggacg tgctcagcaa tgggcttagt tcattaatca acgcaggtgc
6781 taatgcaata aatcagaggg cagaatttga ttttaatcaa aaattgcagc aaaattcttt
6841 taatcatgat aaggagatgt tgcaggctca gattcaggca actaagcagc tgcaggcaga
6901 catgatggct ataaaacaag gggtcttgac cgctggcggc ttctcccctg ctgatgcagc
6961 cagaggtgct gtgaacgcgc ccatgacaca ggcgctggat tggaatggca caaggtattg
7021 ggcaccaaac tccatgagga ccacatccta ttctggaaaa ttcacatcaa ccgccccagt
7081 gaggcaggct gacttcctgc acacccaaag ccggccttcg agtggctcct ctgtgtcttc
7141 ctttgccact cagtcttcaa ggccaactct gaccacaacc actggttcct cacatggcac
7201 agcctcatca aattcaactc gcagcacaag cctctcccag tcaacggttt ctaggactgg
7261 tgagtgggtt agagatcaaa atagaaattt ggaaccctat atgcatggtg ccttgcagac
7321 agcctttgtc accccacctt ccagcagggc atctgacggg acagtctcaa ccgtccctaa
7381 aggtgttttg gactcctgga cacctgcgtt taacacccgc aggcagccgc tttttgcaca
7441 cctccgtaag aggggggagt cacaagctta gtgaaaaggt gaaaatttgt ttaggattaa
//