Typing tool
|
Complete norovirus genomes
PP267291 | GII.17 | ||
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GII.P17 |
ORF1: 1..5099 ORF2: 5080..6702 ORF3: 6702..7481LOCUS PP267291 7488 bp RNA linear VRL 09-FEB-2024 DEFINITION Norovirus GII isolate 22040121 nonstructural polyprotein (ORF1) gene, partial cds; and VP1 (ORF2) and VP2 (ORF3) genes, complete cds. ACCESSION PP267291 VERSION PP267291.1 KEYWORDS . SOURCE Norovirus GII ORGANISM Norovirus GII Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 7488) AUTHORS Tao,L., Wang,X. and Ding,J. TITLE Direct Submission JOURNAL Submitted (04-FEB-2024) Department of Microbiology Laboratary, Nanjing Municipal Center for Disease Control and Prevention affiliated to Nanjing Medical University, Zizhulin No. 2, Nanjing, Jiangsu 210003, China COMMENT ##Assembly-Data-START## Assembly Method :: BWA v. 0.7.17-r1188 Sequencing Technology :: Illumina ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..7488 /organism="Norovirus GII" /mol_type="genomic RNA" /isolate="22040121" /isolation_source="stool sample" /host="Homo sapiens" /db_xref="taxon:122929" /country="China" /collection_date="01-Apr-2022" /note="genotype: GII.17[P17]" gene <1..5099 /gene="ORF1" CDS <1..5099 /gene="ORF1" /codon_start=3 /product="nonstructural polyprotein" /protein_id="WVN22361.1" /translation="SNDASAAVAGKNNNNDKEKSSSDSLFANMSVTFKKALGARSKQP PPGETKQIQKPPRPPTPELVKRIPPPPPNGEDEPGIVYKVGEGVSGLPDLTTVVQPDA QNTAYSVPPLSQREVGEAKEPLPGSILEMWDGEIYHYGLYVERGHVLGVHKPPAAISL AKIEITPLSLYWRVVYTPQYLIDPGTLKNLSGETFPYTAFDNNCYAFCCWVLDLNDSW LSRRMIQRTTGFFKPYQDWNRKPLPTMDEPKIKKAANAVLCALSSLFTRPIKDIIGKL RPLNVLNILATCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYEMQGPEDL AVELVPVVMGGIGLVLGFTKEKIGKMLSSAATTLRACKDLGSYGLEILKLVMKWFFPK KEEANELAMVRAIEDAVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARKLSTK SASPDIVGTINALLARIAAARSLVHKAKEELSSRQRPVVVMISGRPGIGKTHLARELA KKVASTLSGDQRIGLVPRNGVDHWDAYKGERVVLWDDYGMSNPIQDALRLQELADTCP LTLNCDRIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYADAPDIEKA KRDFPGQPDMWKDHFRPDFSHIKLQLAPQGGFDKNGNTPHGKGVVKSLTIGSLIARAS GLLHERMDEFELQGSGLPTFNFDRNKVAAFRQLAAENKYGLMDTLRVGNQLKSVKTLD ELKQAIKNISIKKCQIVYNGCTYTMESDGKGKVVVEKVQNATVQTNNELVGALHHLRS ARIRYYVKCFQEAIYSLLQIAGAAFVTSRIVRRMNISNLWSKPPIEEGDEPEDRGGCP KPRDEDDLTIDSRDIKVEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERNGK YSIEEYLQDRDRYYEELAIAKATEEDFCEEEEIKIRQRIFRPTRKQRKEERATLGLVT GSEIRKRNPDDFKPKGKLWADDNRSVDYNERIDFEAPPSVWSRIVNFGTGWGFWVSPS LFITSTHVIPKGITEAFGVPINQIQIHKSGEFCRLRFPKPIRPDVSGMILEEGAPEGT VVSILIKRTTGELMPLAVRMGTHATMKIQGRTVGGQMGMLLTGSNAKGMDLGTTPGDC GCPYIYKRGNDLVVIGVHTAAARGGNTVICATQGSEGEATLEGGDNKGTYCGAPILGP GNAPKLSTKTKFWRSSNAPLPPGTYEPAYLGGRDPRVKGGPSLQQVMRDQLKPFTEPR GKPPNPNVLESAKKTIINVLEQTIDPPQKWSYAQACASLDKTTSSGYPHHVRKNDYWS GESFTGKLADQASKANLMYEEGKHMQPVYTAALKDELVKTDKIYGKIKKRLLWGSDLS TMIRCARAFGGLMDEFKANCITLPIRVGMNMNEDGPIIFEKHSRYRYHYDADYSRWDS TQQRAVLEAALEIMVRFSAEPQLAQIVAEDLLSPSVVDVGDFKIAINEGLPSGVPCTS QWNSIAHWLLTLCALSEVTGLGPDIIQANSMYSFYGDDEIVSTDIKLDSEKLTAKLKE YGLKPTRPDKTEGPLVISEDLNGLTFLRRTVTRDPAGWFGKLDQNSILRQLYWTRGPN HEDPSETMIPHAQRPVQLMALLGESSLHGPSFYSKVSKLVISELKEGGMDFYVPRQES MFRWMRFSDLSTWEGDRNLAPSFVNEDGVE" mat_peptide <1..989 /gene="ORF1" /product="p48" mat_peptide 990..2087 /gene="ORF1" /product="NTPase" mat_peptide 2088..2624 /gene="ORF1" /product="p22" mat_peptide 2625..3023 /gene="ORF1" /product="VPg" mat_peptide 3024..3566 /gene="ORF1" /product="Pro" mat_peptide 3567..5096 /gene="ORF1" /product="RdRp" gene 5080..6702 /gene="ORF2" CDS 5080..6702 /gene="ORF2" /note="major capsid protein" /codon_start=1 /product="VP1" /protein_id="WVN22362.1" /translation="MKMASNDAAPSNDGAAGLVPEGNNETLPLEPVAGAAIAAPVTGQ NNIIDPWIRTNFVQAPNGEFTVSPRNSPGEILLNLELGPDLNPYLAHLSRMYNGYAGG VEVQVLLAGNAFTAGKILFAAVPPNFPVEFLSPAQITMLPHLIVDVRTLEPIMIPLPD VRNTFFHYSNQPNSRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPTPDFEFTYLVPP SVESKTKPFSLPILTLSELTNSRFPVPIDSLFTAQNNVLQVQCQNGRCTLDGELQGTT QLLPTGICAFRGRVTAQINQRDRWHMQLQNLNGATYDPTDDVPAPLGTPDFKGVVFGM VSQRNVGNDAPGSTRAQQAWVSTYSPQFVPKLGSVNLRISNNDDFQFQPTKFTPVGIN DDDDDHPFRQWELPNYSGELTLNMNLAPPVAPNFPGEQLLFFRSFVPCSGGYNQGIID CLIPQEWIQHFYQESAPSQSDVALIRYVNPDTGRTLFEAKLHRSGYITVAHSGDYPLV VPANGHFRFDSWVNQFYSLAPMGTGNGRRRAQ" gene 6702..7481 /gene="ORF3" CDS 6702..7481 /gene="ORF3" /note="minor structural protein; small basic protein" /codon_start=1 /product="VP2" /protein_id="WVN22363.1" /translation="MAGAFIAGLAGDMLTSSVGSLVNAGANAINQKIDFENNKQLQSA SFQHDKEMLQAQVRATKQLQSEMIALKQGVLAAGGFSPTDAARGSIGAPMTKVLDWSG TRYWAPNSTKTTGYSGQFTSSLVHMSSPTAPQSKPAKPRSLAPSSSSSSVYSMYTQST HLTSGSPSNASSASTKLTNLSSGSSQNRIAEWVNQQRSLSPFMSGALNISHVTPPSSR ASSSGTVSTVPKEVLDSWTSAFNTHRQPLFAHLRVRGESRV" ORIGIN 1 cgtctaacga cgcttccgct gccgttgctg gcaaaaacaa caacaacgac aaggaaaagt 61 cttcaagtga cagcttgttt gctaacatgt ctgtcacttt taagaaagcc ctcggggcgc 121 ggtctaaaca accgcccccg ggagaaacaa aacaaataca aaaaccacca aggccaccga 181 caccggaatt ggtgaagaga atacctccac ccccacccaa tggcgaggat gaaccaggga 241 tagtgtacaa agtgggagag ggtgtgtctg ggctgcccga cctaacaact gtggtacaac 301 ctgacgcaca aaacacagct tatagtgttc ccccacttag ccagagagaa gtcggcgaag 361 ctaaagaacc gctgcctggc tccattctgg aaatgtggga tggtgagatc taccactatg 421 ggctgtatgt tgagcggggg catgtgctcg gagtgcacaa accacctgct gcaataagcc 481 tcgccaaaat tgaaataaca ccgctgtctc tctactggag agtggtctac actccccagt 541 atttgataga tccaggaact cttaagaact tgagtggaga gactttccca tacacggcct 601 ttgacaacaa ctgttatgcc ttctgttgtt gggtcctaga cctcaacgac tcctggctta 661 gcaggagaat gatccagaga acaactgggt tcttcaaacc ttatcaggat tggaacagaa 721 aacccttacc aaccatggat gaaccgaaaa ttaagaaggc cgcgaatgct gtcctatgcg 781 ctctctcctc actcttcact agacccatta aggacatcat cggaaagctt agaccactga 841 atgttcttaa tatactggca acctgcgatt ggacttttgc aggcatagtg gaatccttga 901 tccttcttgc tgaactcttt ggggtgttct ggacaccccc agatgtgtct gcgatgattg 961 ctcccttact cggtgactac gagatgcaag gccccgaaga cctggccgtg gaacttgtgc 1021 ccgtggtgat gggaggaata ggtttggtgt taggattcac caaagaaaag atcggcaaga 1081 tgctttcatc agctgcgacc acacttaggg cctgcaagga tctaggatct tatggattgg 1141 agatactcaa attggtcatg aagtggttct tccccaagaa ggaggaggct aacgaactag 1201 ccatggtaag ggccattgag gatgcagtcc tggatttgga ggcaatagaa aacaatcata 1261 tgaccaccct tctcaaggat aaagacagcc tggccacata catgaggact cttgacttgg 1321 aagaagagaa agcaaggaaa ctgtcaacca aatcggcgtc acctgacatc gtgggtacaa 1381 taaacgcatt gttggctagg atagcagccg ccaggtcact ggtccacaag gctaaggagg 1441 agctctcgag cagacagaga cctgttgttg taatgatatc aggtagacca ggtataggaa 1501 agacccatct ggccagagag ctagccaaga aagttgcgtc aacactgtca ggcgaccaaa 1561 ggattggact ggtgcctagg aatggcgtcg accattggga cgcctacaag ggagaaaggg 1621 tggtcctgtg ggatgattat ggtatgagca accctataca agacgcactg aggctccaag 1681 aattggctga cacctgtcct ctgaccctaa attgtgatag gattgaaaat aaaggaaaag 1741 tgttcgacag tgatgccata attataacaa ccaaccttgc aaacccagca ccactagact 1801 atgtcaactt tgaggcctgc tctagacgca tagacttctt ggtgtatgca gacgcacctg 1861 acattgagaa ggctaagcgt gatttccctg gccaaccaga tatgtggaaa gaccatttta 1921 gaccagactt ctcacacatt aaacttcagc tggcaccaca gggaggtttt gacaaaaatg 1981 gcaacacccc acatggcaaa ggtgtggtaa agtccctgac gattggttct ctgatcgcca 2041 gggcctccgg cttgctccac gagagaatgg atgaattcga gctccaaggc tctggcctgc 2101 caaccttcaa ttttgaccgc aacaaagtcg ccgccttcag acaattagca gctgaaaaca 2161 aatatggtct tatggacaca ttgagggtcg gcaaccaact gaaaagtgtt aagaccctgg 2221 atgagctgaa gcaggccata aagaacatca gtatcaagaa gtgtcagata gtgtataatg 2281 gatgcaccta taccatggaa tctgatggga agggcaaggt tgtggttgaa aaggtacaaa 2341 acgcaacagt tcaaaccaac aatgaacttg taggagcgct ccaccacctg agatctgcaa 2401 ggataagata ctatgttaaa tgtttccaag aagccattta ctctctactc caaattgctg 2461 gtgcagcctt tgtcacctca cgcatcgtga ggcgtatgaa catatcaaac ctctggtcga 2521 agccacccat cgaggagggt gatgagcctg aagacagagg aggatgcccc aagcccaggg 2581 atgaagacga tctcactatt gactctagag acattaaagt ggaagggaag aagggcaaga 2641 acaagtctgg ccggggcaag aaacacacag ccttctcttc caagggcctc agtgatgaag 2701 agtacgatga gtacaagaga atcagagagg agaggaatgg caaatactca atagaggaat 2761 acctccaaga tagggacaga tactatgaag agcttgccat tgctaaggcc actgaggagg 2821 acttctgtga ggaggaggag atcaaaatcc gccagagaat cttccgaccc accaggaagc 2881 agcggaaaga ggaaagggcc acgcttgggc ttgtcacagg atcggaaatc agaaagagga 2941 atccagatga ctttaaacca aaaggaaaat tgtgggctga tgacaacagg agcgtggatt 3001 acaatgagag gatagatttt gaggctcccc cgagtgtctg gtctaggata gtcaactttg 3061 gcacaggctg gggattctgg gtttctccaa gtctctttat aacttcaaca cacgtcatac 3121 caaaaggaat cactgaggcc tttggagtgc ccataaacca aatccaaatt cacaaatctg 3181 gagaattttg ccgcttgcgg tttccaaagc caattagacc agacgtgagt gggatgatct 3241 tggaagaggg cgcccctgaa ggcactgttg tgtctattct catcaaaagg acaacagggg 3301 agctgatgcc tcttgcagtc agaatgggga ctcatgccac aatgaaaatc caaggtagaa 3361 cggtgggtgg ccagatgggt atgcttctca ctggctcaaa tgctaaaggc atggatctag 3421 gtacaacgcc aggtgactgc ggatgtccat acatatacaa aaggggcaat gaccttgtgg 3481 tcattggggt gcacactgca gcagctcgtg gaggcaacac ggtcatatgt gccacacagg 3541 gaagtgaagg tgaagccact cttgaaggag gtgacaacaa gggcacctat tgtggagccc 3601 ccatcttggg acctggcaat gcaccaaaat tgagcacaaa gacaaaattc tggaggtcct 3661 ctaacgcacc gcttccccca ggtacttatg aaccagcata ccttggtggg agagacccgc 3721 gcgtgaaggg aggcccatct ctgcaacaag ttatgagaga ccaacttaaa ccttttacag 3781 agcccagagg gaagccacca aacccaaatg tcttagagtc agcaaagaag actatcatca 3841 atgttctgga acaaaccatt gacccccctc aaaagtggtc atatgcccaa gcttgtgcat 3901 ccctcgacaa gacaacctcc agtggatacc cacaccacgt ccggaagaat gactattgga 3961 gtggtgaatc cttcacagga aaacttgcag atcaggcttc aaaagcaaat ctcatgtatg 4021 aggaaggcaa gcacatgcaa ccagtttaca ccgcggcact caaagacgag ctcgtgaaaa 4081 ctgacaaaat ttatggcaaa atcaagaaaa gactcctgtg gggttctgac ctctccacaa 4141 tgattcgatg cgccagagca tttggtggcc tcatggatga attcaaagca aattgtatta 4201 cactccctat cagagttggt atgaatatga atgaagatgg tcccataata tttgagaaac 4261 attccaggta taggtaccac tatgatgctg attactcccg ctgggactcc acacaacagc 4321 gggcagtgct ggaagcggca cttgaaatca tggtgagatt ttctgctgag ccacagctgg 4381 cacaaatagt ggcagaggac ctgctgtcac caagtgtggt tgatgtgggc gatttcaaaa 4441 tcgctatcaa tgaaggccta ccatctggcg tgccttgcac ctcacaatgg aattctattg 4501 cccactggtt acttaccttg tgtgcccttt ctgaagtgac aggattaggt cctgacatca 4561 tacaagctaa ctccatgtac tctttctatg gtgatgatga gattgtgagc acagacataa 4621 aattggactc agagaaattg accgcaaagc tcaaagaata tggccttaaa cccactcggc 4681 ccgacaaaac tgaggggccg ttggtgatta gtgaggacct gaatgggttg actttcctcc 4741 gccgaacagt cacccgtgat ccagcaggtt ggtttggaaa gttggaccaa aactccatcc 4801 tcaggcagtt gtactggaca agaggaccca accatgaaga ccccagtgag accatgatac 4861 cacacgcaca aagacctgtg cagctcatgg cactactagg agaatcctcc ctacatggac 4921 cctcatttta cagcaaggtt agcaaattag tcatatctga acttaaagag ggaggaatgg 4981 atttttatgt gcccagacaa gagtcaatgt tcagatggat gaggttctca gatctaagca 5041 catgggaggg cgatcgcaat ctggctccca gttttgtgaa tgaagatggc gtcgaatgac 5101 gccgctccat ctaatgatgg tgctgctggt ctcgtaccag agggcaacaa cgagaccctt 5161 cccctagaac cagttgcggg cgcagctata gccgcacccg tcactggcca aaataatata 5221 attgacccct ggattagaac aaattttgtg caagcaccaa atggagagtt cacagtgtca 5281 cctagaaact ctcctggaga aattttatta aatttagagt tgggccctga tttgaaccct 5341 tatttggctc atttgtcaag aatgtacaat gggtatgctg gtggagtgga agttcaggtt 5401 ctcctggcag ggaacgcgtt cactgccgga aagatcctct tcgccgctgt cccgccaaat 5461 ttcccagtgg aattcttaag cccagctcag atcacaatgc tcccacattt aatagtagat 5521 gttaggactc ttgaaccaat tatgatccca ctccctgatg ttaggaatac attcttccat 5581 tatagtaacc agcctaatag ccgcatgaga ttagtggcta tgctctatac cccactcagg 5641 tctaatggct caggtgatga tgtctttact gtctcttgca gggtcttgac taggcctact 5701 cctgattttg agttcactta tttagtgcca ccttctgttg aatctaaaac taagcctttt 5761 tccttaccta ttttaaccct ttctgagctc acaaattcga ggtttccagt ccccatcgat 5821 tcgcttttca ccgcccagaa taatgtgttg caggtgcagt gtcaaaatgg caggtgtaca 5881 cttgatggtg agttacaagg cacaacccag ttgctcccaa ctggcatctg tgcattcaga 5941 ggacgggtga cagcacaaat taaccaacgt gacaggtggc acatgcaact gcaaaacctc 6001 aatggtgcaa catatgaccc aactgatgat gtgccagccc cgctgggtac acctgacttc 6061 aagggcgtcg tgtttgggat ggtaagccaa agaaatgtgg gtaatgacgc gcctggttca 6121 accagagccc aacaggcgtg ggtttcaact tatagccccc aatttgtccc caaattaggt 6181 tctgtcaatc ttagaattag taataatgat gatttccaat tccagccgac aaaattcaca 6241 ccagtgggca tcaatgatga tgatgatgac cacccgttca gacagtggga actaccaaac 6301 tattcagggg agcttacctt gaatatgaat cttgcccccc cagttgctcc aaattttcct 6361 ggtgaacaat tgctattctt cagatctttt gtgccatgct caggaggtta caatcaaggt 6421 attatagatt gtcttattcc ccaagaatgg atccaacact tctatcagga atcagcaccc 6481 tcccagtcag acgtggccct aatcaggtat gtcaaccccg atacgggacg tacactgttt 6541 gaagcaaaat tgcacagatc tggttacatt actgtggctc actctggaga ctatcctctt 6601 gttgttccgg ctaatggaca ctttagattt gattcttggg taaatcagtt ttactcactc 6661 gccccaatgg gaactgggaa tgggcgaagg agggctcagt aatggctggg gctttcattg 6721 caggattggc aggcgacatg ctcacgtcat ctgtgggctc ccttgtgaac gcaggggcaa 6781 acgccatcaa ccaaaagata gactttgaaa acaacaaaca actccagtct gcttcctttc 6841 agcatgataa agagatgctc caagcgcagg tgagggcaac caagcagctg caatctgaaa 6901 tgatagccct aaaacagggg gttttggccg caggcggctt ttcccctact gatgcagcaa 6961 ggggatccat tggtgcaccc atgacaaagg tgcttgactg gtctggcact cgatactggg 7021 cgcccaattc cacaaagaca actggctatt cgggacaatt cacctcttca ctcgtgcata 7081 tgtctagccc aactgctcca caatcaaaac ctgcgaagcc taggtctcta gctccttcct 7141 cttcttctag tagtgtttat agtatgtata ctcaatctac tcatttgaca tctggctctc 7201 ctagtaatgc ttcttctgcc tccacaaaat tgacaaattt aagctctggc tcctctcaaa 7261 acagaatagc agaatgggta aatcaacaga gaagtcttag ccctttcatg agtggcgcac 7321 ttaacatctc acatgtcacg ccaccctcaa gtagggcttc cagttctggg acggtctcga 7381 ccgtgcccaa ggaagttttg gactcctgga cgtctgcgtt taacacacac agacagccgc 7441 tcttcgcaca cctcagagtg aggggggagt cacgtgttta gtgaaaag //