Typing tool
|
Complete norovirus genomes
PP267290 | GII.17 | ||
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GII.P17 |
ORF1: 1..5099 ORF2: 5080..6702 ORF3: 6702..7481LOCUS PP267290 7488 bp RNA linear VRL 09-FEB-2024 DEFINITION Norovirus GII isolate 22040120 nonstructural polyprotein (ORF1) gene, partial cds; and VP1 (ORF2) and VP2 (ORF3) genes, complete cds. ACCESSION PP267290 VERSION PP267290.1 KEYWORDS . SOURCE Norovirus GII ORGANISM Norovirus GII Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 7488) AUTHORS Tao,L., Wang,X. and Ding,J. TITLE Direct Submission JOURNAL Submitted (04-FEB-2024) Department of Microbiology Laboratary, Nanjing Municipal Center for Disease Control and Prevention affiliated to Nanjing Medical University, Zizhulin No. 2, Nanjing, Jiangsu 210003, China COMMENT ##Assembly-Data-START## Assembly Method :: BWA v. 0.7.17-r1188 Sequencing Technology :: Illumina ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..7488 /organism="Norovirus GII" /mol_type="genomic RNA" /isolate="22040120" /isolation_source="stool sample" /host="Homo sapiens" /db_xref="taxon:122929" /country="China" /collection_date="01-Apr-2022" /note="genotype: GII.17[P17]" gene <1..5099 /gene="ORF1" CDS <1..5099 /gene="ORF1" /codon_start=3 /product="nonstructural polyprotein" /protein_id="WVN22358.1" /translation="SNDASAAVAGKNNNNDKEKSSSDSLFANMSVTFKKALGARSKQP PPGETKQIQKPPRPPTPELVKKIPPPPPNGEDEPGIVYKVGEGVSGLPDLTTVAQPDA QNTAYSVPPLSQREVGEAKEPLPGSILEMWDGEIYHYGLYVERGHVLGVHKPPAAISL AKIEITPLSLYWRVVYTPQYLIDPGTLKNLSGETFPYTAFDNNCYAFCCWVLDLNDSW LSRRMIQRTTGFFKPYQDWNRKPLPTMDEPKIKKAANAVLCALSSLFTRPIKDIIGKL RPLNILNILATCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYEMQGPEDL AVELVPVVMGGIGLVLGFTKEKIGKMLSSAATTLRACKDLGSYGLEILKLVMKWFFPK KEEANELAMVRAIEDAVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARKLSTK SASPDIVGTINALLARIAAARSLVHKAKEELSSRQRPVVVMISGRPGIGKTHLARELA KKVASTLSGDQRIGLVPRNGVDHWDAYKGERVVLWDDYGMSNPIQDALRLQELADTCP LTLNCDRIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYADAPDIEKA KRDFPGQPDMWKDHFRPDFSHIKLQLAPQGGFDKNGNTPHGKGVVKSLTIGSLIARAS GLLHERMDEFELQGSDLPTFNFDRNKVAAFRQLAAENKYGLMDTLRVGNQLKSVKTLD ELKQAIKNISIKKCQIVYNGCTYAMESDGRGKVVVEKVQNATVQTNNELVGALHHLRS ARIRYYVKCFQEAIFSLLQIAGAAFVTSRIVRRMNISNLWSKPPIEEGDEPEDRGGCP KPRDEDDLTIDSRDIKVEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERNGK YSIEEYLQDRDRYYEELAIAKATEEDFCEEEEIKIRQRIFRPTRKQRKEERATLGLVT GSEIRKRNPDDFKPKGKLWADDNRSVDYNERIDFEAPPSVWSRIVNFGTGWGFWVSPS LFITSTHVIPKGITEAFGVPINQIQIHKSGEFCRLRFPKPIRPDVSGMILEEGAPEGT VVSILIKRTTGELMPLAVRMGTHATMKIQGRTVGGQMGMLLTGSNAKGMDLGTTPGDC GCPYIYKRGNDLVVIGVHTAAARGGNTVICATQGSEGEATLEGDDNKGTYCGAPILGP GNAPKLSTKTKFWRSSNAPLPPGTYEPAYLGGRDPRVKGGPSLQQVMRDQLKPFTEPR GKPPNPNVLESAKKTIINVLEQTIDPPQKWSYAQACASLDKTTSSGYPHHVRKNDYWS GESFTGKLADQASKANLMYEEGKHMQPVYTAALKDELVKTDKIYGKIKKRLLWGSDLS TMIRCARAFGGLMDEFKANCITLPIRVGMSMNEDGPIIFEKHSRYRYHYDADYSRWDS TQQRAVLEAALEIMVRFSAEPQLAQIVAEDLLSPSVVDVGDFKIAINEGLPSGVPCTS QWNSIAHWLLTLCALSEVTGLGPDIIQANSMYSFYGDDEIVSTDIKLDPEKLTAKLKE YGLKPTRPDKTEGPLVISEDLNGLTFLRRTVTRDPAGWFGKLDQNSILRQLYWTRGPN HEDPSETMIPHAQRPVQLMALLGESSLHGPSFYSKVSKLVISELKEGGMDFYVPRQES MFRWMRFSDLSTWEGDRNLAPSFVNEDGVE" mat_peptide <1..989 /gene="ORF1" /product="p48" mat_peptide 990..2087 /gene="ORF1" /product="NTPase" mat_peptide 2088..2624 /gene="ORF1" /product="p22" mat_peptide 2625..3023 /gene="ORF1" /product="VPg" mat_peptide 3024..3566 /gene="ORF1" /product="Pro" mat_peptide 3567..5096 /gene="ORF1" /product="RdRp" gene 5080..6702 /gene="ORF2" CDS 5080..6702 /gene="ORF2" /note="major capsid protein" /codon_start=1 /product="VP1" /protein_id="WVN22359.1" /translation="MKMASNDAAPSNDGAAGLVPEGNNETLPLEPVAGAAIAAPVTGQ NNIIDPWIRTNFVQAPNGEFTVSPRNSPGEILLNLELGPDLNPYLAHLSRMYNGYAGG VEVQVLLAGNAFTAGKILFAAVPPNFPVEFLSPAQITMLPHLIVDVRTLEPIMIPLPD VRNTFFHYSNQPNSRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPTPDFEFTYLVPP SVESKTKPFSLPILTLSELTNSRFPVPIDSLFTAQNNVLQVQCQNGRCTLDGELQGTT QLLPTGICAFRGRVTAQINQRDRWHMQLQNLNGTTYDPTDDVPAPLGTPDFKGVVFGM VSQRNVGNDAPGSTRAQQAWISTYSPQFVPKLGSVNLRISNNDDFQFQPTKFTPVGVN DDDDDHPFRQWELPNYSGELTLNMNLAPPVAPNFPGEQLLFFRSFVPCSGGYNQGIID CLIPQEWIQHFYQESAPSQSDVALIRYVNPDTGRTLFEAKLHRSGYITVAHSGDYPLV VPANGHFRFDSWVNQFYSLAPMGTGNGRRRAQ" gene 6702..7481 /gene="ORF3" CDS 6702..7481 /gene="ORF3" /note="minor structural protein; small basic protein" /codon_start=1 /product="VP2" /protein_id="WVN22360.1" /translation="MAGAFIAGLAGDMLTSSVGSLVNAGANAINQKIDFENNKQLQSA SFQHDKEMLQAQVRATKQLQSEMIALKQGVLAAGGFSPTDAARGSIGAPMTKVLDWSG TRYWAPNSTKTTGYSGQFTSSPVHMPSPNAPQSKPAKPRSLAPSSSSSSIYSMYTQST HLTSGSSSNASSASTKLTNLSSGSSQNRTAEWVNQQRSLSPFMSGALNISHVTPPSSR ASSSGTVSTVPKEVLDSWTSAFNTHRQPLFAHLRVRGESRV" ORIGIN 1 cgtctaacga cgcttccgct gccgttgctg gcaaaaacaa caacaacgac aaggaaaaat 61 cttcaagtga cagcttgttt gctaatatgt ctgtcacttt taagaaagcc ctcggggcgc 121 ggtctaaaca accgcccccg ggagaaacaa aacaaataca aaaaccacca aggccaccga 181 caccggaatt ggtgaagaaa atacctccac ccccacccaa tggcgaggac gaaccaggga 241 tagtgtataa ggtgggagag ggtgtgtctg ggctgcccga cctaacaact gtggcacaac 301 ctgacgcaca aaacacagct tatagtgttc ccccacttag ccagagagaa gtcggcgaag 361 ctaaagaacc gctgcctggc tccattctgg aaatgtggga tggtgagatc taccactatg 421 ggctgtatgt tgagcggggg catgtgctcg gagtacacaa accacctgct gcaataagcc 481 ttgccaaaat tgaaataaca ccgttgtctc tctactggag agtggtctac actccccagt 541 atttgataga tccaggaact ctcaagaact tgagtggaga gactttccca tacacggcct 601 ttgataacaa ctgttatgcc ttctgttgtt gggtcctaga cctcaacgac tcctggctta 661 gcaggagaat gattcaaaga acaactggat ttttcaaacc ttatcaggat tggaacagaa 721 aacccttacc aaccatggat gaaccgaaaa tcaagaaggc cgcgaatgct gtcctatgcg 781 ctctctcctc actcttcact agacccatca aggacatcat tgggaagctt agaccactga 841 acattcttaa tatactggca acctgcgatt ggacttttgc aggcatagtg gaatccttga 901 tccttcttgc tgaactcttt ggggtgttct ggacaccccc agatgtgtct gcgatgattg 961 ctcccttgct cggtgactac gagatgcaag gccccgaaga cctggccgtg gaacttgtgc 1021 ccgtggtgat gggaggaata ggtttggtgt taggattcac caaagaaaag atcggcaaga 1081 tgctttcgtc agctgcgacc acacttaggg cctgcaagga tctaggatct tatggattgg 1141 agatacttaa attggtcatg aagtggttct tccccaagaa ggaggaggct aacgaactag 1201 ccatggtaag ggccattgag gatgcagtcc tggatttgga ggcaatagaa aacaatcata 1261 tgaccaccct tctcaaggat aaagacagcc tggccacata catgaggact cttgacttgg 1321 aagaagagaa agcaaggaaa ctgtcaacca aatcggcgtc acctgacatc gtgggtacaa 1381 taaacgcatt gttggctagg atagcagccg ccaggtcact ggtccacaag gctaaggagg 1441 agctctcgag cagacagaga cctgttgttg taatgatatc aggtagacca ggtataggaa 1501 agacccatct ggccagagag ctagccaaga aagttgcgtc aacactgtca ggcgaccaaa 1561 ggattggact ggtgcctagg aatggcgtcg accattggga cgcctacaag ggagaaaggg 1621 tggtcctgtg ggatgattat ggtatgagca accctataca agacgcactg aggctccaag 1681 aattggctga cacctgtcct ctgaccctaa attgtgatag gattgaaaat aaaggaaaag 1741 tgttcgacag tgatgccata attataacaa ccaaccttgc aaacccagca ccactagact 1801 atgtcaactt tgaggcctgc tctagacgca tagacttctt ggtgtatgca gacgcacctg 1861 acattgagaa ggctaagcgt gatttccctg gccaaccaga tatgtggaaa gatcatttta 1921 gaccagactt ctcacacatt aaacttcagc tggcaccaca gggaggtttt gacaaaaatg 1981 gcaacacccc acatggcaaa ggtgtggtaa agtccctgac gattggttct ctgatcgcca 2041 gggcctccgg cttgctccac gagagaatgg atgaattcga gctccaaggc tctgacctgc 2101 caaccttcaa ttttgaccgc aacaaagtcg ccgccttcag acaattagca gctgaaaaca 2161 aatatggtct tatggacaca ttgagggtcg gcaaccaact gaaaagtgtt aagaccctgg 2221 atgagctgaa gcaggccata aagaacatca gtatcaagaa gtgtcagata gtgtataatg 2281 gatgcaccta tgccatggaa tctgatggga ggggcaaggt tgtggttgag aaggtacaaa 2341 acgcaacagt tcaaaccaac aatgaacttg taggggcgct ccaccacctg agatccgcaa 2401 ggataagata ctatgttaaa tgttttcaag aagccatttt ctctctactc caaattgctg 2461 gtgcagcctt tgtcacctca cgcatcgtga ggcgcatgaa catatcaaac ctctggtcga 2521 agccacccat cgaggagggt gacgagcctg aagacagagg aggatgcccc aagcccaggg 2581 atgaagatga cctcactatt gactctagag acattaaagt ggaagggaag aagggcaaga 2641 acaagtctgg ccggggcaag aaacacacag ccttctcttc caagggcctc agtgatgaag 2701 agtacgatga gtacaagaga atcagagagg agaggaatgg caaatactca atagaggaat 2761 acctccaaga tagggacaga tactatgaag agcttgccat tgctaaggcc actgaggagg 2821 acttctgtga ggaggaggag attaaaatac gccagagaat cttccgaccc accaggaagc 2881 agcggaaaga ggaaagggcc acgcttgggc ttgtcacagg atcggaaatc agaaagagga 2941 atccagatga ctttaaacca aagggaaaat tgtgggctga tgacaacagg agcgtggatt 3001 acaatgagag gatagatttt gaggctcccc cgagtgtttg gtctaggata gtcaactttg 3061 gcacaggctg gggattctgg gtttctccaa gtctctttat aacttcaaca cacgtcatac 3121 caaaaggaat cactgaggcc tttggagtgc ccataaacca aatccaaatt cacaaatctg 3181 gagaattttg ccgcttgcgg tttccaaagc caattaggcc agacgtgagt gggatgatct 3241 tggaagaggg cgcccctgaa ggcactgttg tgtctattct catcaaaagg acaacagggg 3301 agctgatgcc tcttgcagtc agaatgggga ctcatgccac aatgaaaatc caaggtagaa 3361 cggtgggtgg tcagatgggt atgcttctca ctggctcaaa tgctaaaggc atggatctag 3421 gcacaacgcc aggtgactgc ggatgtccat acatatacaa aaggggcaat gaccttgtgg 3481 tcattggggt gcacactgca gcagctcgtg gaggcaacac ggtcatatgt gccacacagg 3541 gaagtgaggg tgaagccact cttgaaggag atgacaacaa gggtacctat tgtggagccc 3601 ccattttggg acctggcaat gcaccaaaat tgagcacaaa gacaaaattc tggagatcct 3661 ctaacgcacc gcttccccca ggtacttatg aaccagcata ccttggtggg agagacccgc 3721 gcgtgaaggg aggcccatct ctgcagcaag ttatgagaga tcaactcaaa ccttttacag 3781 agcccagagg gaagccacca aacccaaatg tcttagagtc agcaaagaag actatcatca 3841 atgttctgga acaaaccatt gacccccctc aaaagtggtc atatgcccaa gcttgtgcat 3901 ccctcgacaa gacaacctcc agtggatacc cgcaccacgt ccggaagaat gactactgga 3961 gtggtgaatc cttcacagga aaacttgcag atcaggcttc aaaagcaaat ctcatgtatg 4021 aggaaggcaa gcacatgcaa ccagtttaca ccgcagcact caaagacgag ctcgtgaaaa 4081 ctgacaaaat ctatggcaaa atcaagaaaa gactcctgtg gggctccgac ctctccacaa 4141 tgattcgatg cgccagagca tttggtggtc tcatggatga attcaaagca aattgtatta 4201 cactccctat cagagttggt atgagtatga atgaagatgg tcccataata tttgagaaac 4261 actccaggta caggtaccac tatgatgctg attactcccg ctgggactcc acacaacagc 4321 gggcagtgct ggaagcggca cttgaaatca tggtgagatt ttctgctgag ccacagctgg 4381 cacaaatagt ggcagaggac ctgctgtcac caagtgtggt tgatgtgggc gatttcaaaa 4441 tcgctatcaa tgaaggctta ccatctggcg tgccttgcac ctcacaatgg aattctattg 4501 cccactggtt acttaccttg tgtgcccttt ctgaagtgac aggattaggt cctgacatca 4561 tacaagctaa ctccatgtac tctttctatg gtgatgatga gattgtgagc acagacataa 4621 aattggaccc agagaaattg accgcaaagc tcaaagaata tggccttaaa cccactcggc 4681 ccgacaaaac tgaggggccg ttggtgatta gtgaggacct gaatgggttg actttcctcc 4741 gccgaacagt cacccgcgat ccagcaggtt ggtttggaaa gttggaccaa aactccatcc 4801 tcaggcagtt gtactggaca agaggaccca accatgaaga ccccagtgag accatgatac 4861 cacacgcaca aagacctgtg cagctcatgg cactactagg agagtcctcc ctacatggac 4921 cctcatttta cagcaaggtt agcaaattag taatatctga acttaaagag ggaggaatgg 4981 atttttatgt gcccagacaa gagtcaatgt tcagatggat gaggttctca gatctaagca 5041 catgggaggg cgatcgcaat ctggctccca gttttgtgaa tgaagatggc gtcgaatgac 5101 gccgctccat ctaatgatgg tgctgctggt ctcgtaccag agggcaataa cgagaccctt 5161 cccctagaac cagttgcggg cgcagctata gccgcacccg tcactggcca aaataatata 5221 attgacccct ggattagaac aaattttgtg caagcaccaa atggagagtt cacagtgtca 5281 cccagaaact ctcctggaga aattttatta aatttagagt tgggccctga tttgaaccct 5341 tatttggctc atttgtcaag gatgtacaat gggtatgctg gtggagtgga agttcaggtt 5401 ctcctggcag ggaacgcgtt cactgccgga aagatcctct tcgccgccgt cccgccaaat 5461 ttcccagtgg aattcttaag cccagcccag atcacaatgc tcccacattt aatagtagat 5521 gttaggactc ttgaaccaat tatgatccca ctccctgacg ttaggaatac attcttccat 5581 tatagtaacc agcctaacag ccgcatgaga ttagtggcta tgctctatac cccactcaga 5641 tctaatggct caggtgatga tgtctttact gtctcttgca gggttttgac taggcctact 5701 cctgattttg agttcactta tttagtgcca ccttctgttg aatccaaaac taagcctttt 5761 tccttaccta ttttaaccct ttctgagctc acaaattcga ggtttccagt ccccatcgat 5821 tcgcttttta ccgcccagaa taatgtgttg caggtgcagt gtcaaaatgg caggtgtaca 5881 cttgatggcg agttacaagg cacaacccag ttgctcccaa ctggcatctg cgcattcaga 5941 ggacgggtga cagcacaaat taaccaacgt gacaggtggc acatgcaact gcaaaacctc 6001 aatggtacaa catatgaccc aactgatgat gtgccagccc cgctgggtac acctgacttc 6061 aagggcgtcg tgtttgggat ggtaagccaa agaaatgtgg gtaatgatgc gcctggctca 6121 accagagccc aacaggcgtg gatttcaacc tatagccccc aatttgtccc caaattaggt 6181 tctgtcaatc tcagaattag taataatgat gatttccaat tccagccgac aaaattcaca 6241 ccagtgggcg tcaatgatga cgatgatgac cacccgttca gacagtggga actaccaaac 6301 tattcagggg agcttacctt gaatatgaat cttgcccccc cagttgctcc aaattttcct 6361 ggtgaacaat tgttattctt cagatctttc gtgccatgct caggaggtta caaccaaggt 6421 attatagatt gtcttattcc ccaagaatgg atccaacatt tctatcagga atcagcaccc 6481 tcccagtcag acgtggccct aatcaggtat gtcaaccccg atacgggacg tacactgttt 6541 gaagcaaaat tgcacagatc tggttacatt actgtggctc actctggaga ctatcctctt 6601 gttgttccgg ctaatggaca ctttagattt gattcttggg taaatcagtt ttactcactc 6661 gccccaatgg gaactgggaa tgggcgaagg agggctcagt aatggctggg gctttcattg 6721 caggattggc aggcgacatg ctcacgtcat ctgtgggctc ccttgtgaac gcaggggcaa 6781 acgccatcaa ccaaaagata gactttgaaa ataacaaaca actccagtct gcttcctttc 6841 agcatgataa agagatgctc caagcgcagg tgagggcaac caagcagctg caatctgaaa 6901 tgatagccct aaaacagggg gttttggccg caggcggctt ttcccccact gatgcagcac 6961 ggggatccat tggtgcaccc atgacaaagg tgcttgactg gtctggcact cgatactggg 7021 cgcccaattc cacaaagaca actggctatt cgggacaatt cacctcttca cctgtgcata 7081 tgcctagccc aaatgctcca caatcaaaac ctgcaaagcc taggtctcta gctccttcct 7141 cttcttctag tagtatctac agtatgtaca ctcagtctac tcatttgaca tctggctctt 7201 ctagtaatgc ttcttctgcc tccacaaaat tgacaaattt aagctctggc tcctctcaaa 7261 acagaacagc agagtgggta aatcaacaga gaagtcttag ccctttcatg agtggcgcac 7321 ttaacatctc acatgtcacg ccaccctcaa gtagggcttc cagttctggg acggtctcga 7381 ccgtgcccaa ggaagttttg gactcctgga cgtctgcgtt taacacacac agacagccgc 7441 tcttcgcaca cctcagagtg aggggggagt cacgtgttta gtgaaaag //