Typing tool
|
Complete norovirus genomes
PP267289 | GII.17 | ||
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GII.P17 |
ORF1: 1..5100 ORF2: 5081..6703 ORF3: 6703..7482LOCUS PP267289 7490 bp RNA linear VRL 09-FEB-2024 DEFINITION Norovirus GII isolate 22040119 nonstructural polyprotein (ORF1) gene, partial cds; and VP1 (ORF2) and VP2 (ORF3) genes, complete cds. ACCESSION PP267289 VERSION PP267289.1 KEYWORDS . SOURCE Norovirus GII ORGANISM Norovirus GII Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 7490) AUTHORS Tao,L., Wang,X. and Ding,J. TITLE Direct Submission JOURNAL Submitted (04-FEB-2024) Department of Microbiology Laboratary, Nanjing Municipal Center for Disease Control and Prevention affiliated to Nanjing Medical University, Zizhulin No. 2, Nanjing, Jiangsu 210003, China COMMENT ##Assembly-Data-START## Assembly Method :: BWA v. 0.7.17-r1188 Sequencing Technology :: Illumina ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..7490 /organism="Norovirus GII" /mol_type="genomic RNA" /isolate="22040119" /isolation_source="stool sample" /host="Homo sapiens" /db_xref="taxon:122929" /country="China" /collection_date="01-Apr-2022" /note="genotype: GII.17[P17]" gene <1..5100 /gene="ORF1" CDS <1..5100 /gene="ORF1" /codon_start=1 /product="nonstructural polyprotein" /protein_id="WVN22355.1" /translation="ASNDASAAVAGKNNNNDKEKSSSDSLFANMSVTFKKALGARSKQ PPPGETKQIQKPPRPPTPELVKKIPPPPPNGEDEPGIVYKVGEGVSGLPDLTTVAQPD AQNTAYSVPPLSQREVGEAKEPLPGSILEMWDGEIYHYGLYVERGHVLGVHKPPAAIS LAKIEITPLSLYWRVVYTPQYLIDPGTLKNLSGETFPYTAFDNNCYAFCCWVLDLNDS WLSRRMIQRTTGFFKPYQDWNRKPLPTMDEPKIKKAANAVLCALSSLFTRPIKDIIGK LRPLNILNILATCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYEMQGPED LAVELVPVVMGGIGLVLGFTKEKIGKMLSSAATTLRACKDLGSYGLEILKLVMKWFFP KKEEANELAMVRAIEDAVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARKLST KSASPDIVGTINALLARIAAARSLVHKAKEELSSRQRPVVVMISGRPGIGKTHLAREL AKKVASTLSGDQRIGLVPRNGVDHWDAYKGERVVLWDDYGMSNPIQDALRLQELADTC PLTLNCDRIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYADAPDIEK AKRDFPGQPDMWKDHFRPDFSHIKLQLAPQGGFDKNGNTPHGKGVVKSLTIGSLIARA SGLLHERMDEFELQGSDLPTFNFDRNKVAAFRQLAAENKYGLMDTLRVGNQLKSVKTL DELKQAIKNISIKKCQIVYNGCTYAMESDGRGKVVVEKVQNATVQTNNELVGALHHLR SARIRYYVKCFQEAIYSLLQIAGAAFVTSRIVRRMNISNLWSKPPIEEGDEPEDRGGC PKPRDEDDLTIDSRDIKVEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERNG KYSIEEYLQDRDRYYEELAIAKATEEDFCEEEEIKIRQRIFRPTRKQRKEERATLGLV TGSEIRKRNPDDFKPKGKLWADDNRSVDYNERIDFEAPPSVWSRIVNFGTGWGFWVSP SLFITSTHVIPKGITEAFGVPINQIQIHKSGEFCRLRFPKPIRPDVSGMILEEGAPEG TVVSILIKRTTGELMPLAVRMGTHATMKIQGRTVGGQMGMLLTGSNAKGMDLGTTPGD CGCPYIYKRGNDLVVIGVHTAAARGGNTVICATQGSEGEATLEGDDNKGTYCGAPILG PGNAPKLSTKTKFWRSSNAPLPPGTYEPAYLGGRDPRVKGGPSLQQVMRDQLKPFTEP RGKPPNPNVLESAKKTIINVLEQTIDPPQKWSYAQACASLDKTTSSGYPHHVRKNDYW SGESFTGKLADQASKANLMYEEGKHMQPVYTAALKDELVKTDKIYGKIKKRLLWGSDL STMIRCARAFGGLMDEFKANCITLPIRVGMSMNEDGPIIFEKHSRYRYHYDADYSRWD STQQRAVLEAALEIMVRFSAEPQLAQIVAEDLLSPSVVDVGDFKIAINEGLPSGVPCT SQWNSIAHWLLTLCALSEVTGLGPDIIQANSMYSFYGDDEIVSTDIKLDPEKLTAKLK EYGLKPTRPDKTEGPLVISEDLNGLTFLRRTVTRDPAGWFGKLDQNSILRQLYWTRGP NHEDPSETMIPHAQRPVQLMALLGESSLHGPSFYSKVSKLVISELKEGGMDFYVPRQE SMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE" mat_peptide <1..990 /gene="ORF1" /product="p48" mat_peptide 991..2088 /gene="ORF1" /product="NTPase" mat_peptide 2089..2625 /gene="ORF1" /product="p22" mat_peptide 2626..3024 /gene="ORF1" /product="VPg" mat_peptide 3025..3567 /gene="ORF1" /product="Pro" mat_peptide 3568..5097 /gene="ORF1" /product="RdRp" gene 5081..6703 /gene="ORF2" CDS 5081..6703 /gene="ORF2" /note="major capsid protein" /codon_start=1 /product="VP1" /protein_id="WVN22356.1" /translation="MKMASNDAAPSNDGAAGLVPEGNNETLPLEPVAGAAIAAPVTGQ NNIIDPWIRTNFVQAPNGEFTVSPRNSPGEILLNLELGPDLNPYLAHLSRMYNGYAGG VEVQVLLAGNAFTAGKILFAAVPPNFPVEFLSPAQITMLPHLIVDVRTLEPIMIPLPD VRNTFFHYSNQPNSRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPTPDFEFTYLVPP SVESKTKPFSLPILTLSELTNSRFPVPIDSLFTAQNNVLQVQCQNGRCTLDGELQGTT QLLPTGICAFRGRVTAQINQRDRWHMQLQNLNGTTYDPTDDVPAPLGTPDFKGVVFGM VSQRNVGNDAPGSTRAQQAWISTYSPQFVPKLGSVNLRISNNDDFQFQPTKFTPVGVN DDDDDHPFRQWELPNYSGELTLNMNLAPPVAPNFPGEQLLFFRSFVPCSGGYNQGIID CLIPQEWIQHFYQESAPSQSDVALIRYVNPDTGRTLFEAKLHRSGYITVAHSGDYPLV VPANGHFRFDSWVNQFYSLAPMGTGNGRRRAQ" gene 6703..7482 /gene="ORF3" CDS 6703..7482 /gene="ORF3" /note="minor structural protein; small basic protein" /codon_start=1 /product="VP2" /protein_id="WVN22357.1" /translation="MAGAFIAGLAGDMLTSSVGSLVNAGANAINQKIDFENNKQLQSA SFQHDKEMLQAQVRATKQLQSEMIALKQGVLAAGGFSPTDAARGSIGAPMTKVLDWSG TRYWAPNSTKTTGYSGQFTSSPVHMPSPNAPQSKPAKPRSLAPSSSSSSIYSMYTQST HLTSGSSSNASSASTKLTNLSSGSSQNRTAEWVNQQRSLSPFMSGALNISHVTPPSSR ASSSGTVSTVPKEVLDSWTSAFNTHRQPLFAHLRVRGESRV" ORIGIN 1 gcgtctaacg acgcttccgc tgccgttgct ggcaaaaaca acaacaacga caaggaaaaa 61 tcttcaagtg acagcttgtt tgctaatatg tctgtcactt ttaagaaagc cctcggggcg 121 cggtctaaac aaccgccccc gggagaaaca aaacaaatac aaaaaccacc aaggccaccg 181 acaccggaat tggtgaagaa aatacctcca cccccaccca atggcgagga cgaaccaggg 241 atagtgtata aggtgggaga gggtgtgtct gggctgcccg acctaacaac tgtggcacaa 301 cctgacgcac aaaacacagc ttatagtgtt cccccactta gccagagaga agtcggcgaa 361 gctaaagaac cgctgcctgg ctccattctg gaaatgtggg atggtgagat ctaccactat 421 gggctgtatg ttgagcgggg gcatgtgctc ggagtacaca aaccacctgc tgcaataagc 481 cttgccaaaa ttgaaataac accgttgtct ctctactgga gagtggtcta cactccccag 541 tatttgatag atccaggaac tctcaagaac ttgagtggag agactttccc atacacggcc 601 tttgataaca actgttatgc cttctgttgt tgggtcctag acctcaacga ctcctggctt 661 agcaggagaa tgattcaaag aacaactgga tttttcaaac cttatcagga ttggaacaga 721 aaacccttac caaccatgga tgaaccgaaa atcaagaagg ccgcgaatgc tgtcctatgc 781 gctctctcct cactcttcac tagacccatc aaggacatca ttgggaagct tagaccactg 841 aacattctta atatactggc aacctgcgat tggacttttg caggcatagt ggaatccttg 901 atccttcttg ctgaactctt tggggtgttc tggacacccc cagatgtgtc tgcgatgatt 961 gctcccttgc tcggtgacta cgagatgcag ggccccgaag acctggccgt ggaacttgtg 1021 cccgtggtga tgggaggaat aggtttggtg ttaggattca ccaaagaaaa gatcggcaag 1081 atgctttcgt cagctgcgac cacacttagg gcctgcaagg atctaggatc ttatggattg 1141 gagatactta aattggtcat gaagtggttc ttccccaaga aggaggaggc taacgaacta 1201 gccatggtaa gggccattga ggatgcagtc ctggatttgg aggcaataga aaacaatcat 1261 atgaccaccc ttctcaagga taaagacagc ctggccacat acatgaggac tcttgacttg 1321 gaagaagaga aagcaaggaa actgtcaacc aaatcggcgt cacctgacat cgtgggtaca 1381 ataaacgcat tgttggctag gatagcagcc gccaggtcac tggtccacaa ggctaaggag 1441 gagctctcga gcagacagag acctgttgtt gtaatgatat caggtagacc aggtatagga 1501 aagacccatc tggccagaga gctagccaag aaagttgcgt caacactgtc aggcgaccaa 1561 aggattggac tggtgcctag gaatggcgtc gaccattggg acgcctacaa gggagaaagg 1621 gtggtcctgt gggatgatta tggtatgagc aaccctatac aagacgcact gaggctccaa 1681 gaattggctg acacctgtcc tctgacccta aattgtgata ggattgaaaa taaaggaaaa 1741 gtgttcgaca gtgatgccat aattataaca accaaccttg caaacccagc accactagac 1801 tatgtcaact ttgaggcctg ctctagacgc atagacttct tggtgtatgc agacgcacct 1861 gacattgaga aggctaagcg tgatttccct ggccaaccag atatgtggaa agatcatttt 1921 agaccagact tctcacacat taaacttcag ctggcaccac agggaggttt tgacaaaaat 1981 ggcaacaccc cacatggcaa aggtgtggta aagtccctga cgattggttc tctgatcgcc 2041 agggcctccg gcttgctcca cgagagaatg gatgaattcg agctccaagg ctctgacctg 2101 ccaaccttca attttgaccg caacaaagtc gccgccttca gacaattagc agctgaaaac 2161 aaatatggtc ttatggacac attgagggtc ggcaaccaac tgaaaagtgt taagaccctg 2221 gatgagctga agcaggccat aaagaacatc agtatcaaga agtgtcagat agtgtataat 2281 ggatgcacct atgccatgga atctgatggg aggggcaagg ttgtggttga gaaggtacaa 2341 aacgcaacag ttcaaaccaa caatgaactt gtaggggcgc tccaccacct gagatccgca 2401 aggataagat actatgttaa atgttttcaa gaagccattt actctctact ccaaattgct 2461 ggtgcagcct ttgtcacctc acgcatcgtg aggcgcatga acatatcaaa cctctggtcg 2521 aagccaccca tcgaggaggg tgacgagcct gaagacagag gaggatgccc caagcccagg 2581 gatgaagatg acctcactat tgactctaga gacattaaag tggaagggaa gaagggcaag 2641 aacaagtctg gccggggcaa gaaacacaca gccttctctt ccaagggcct cagtgatgaa 2701 gagtacgatg agtacaagag aatcagagag gagaggaatg gcaaatactc aatagaggaa 2761 tacctccaag atagggacag atactatgaa gagcttgcca ttgctaaggc cactgaggag 2821 gacttctgtg aggaggagga gattaaaata cgccagagaa tcttccgacc caccaggaag 2881 cagcggaaag aggaaagggc cacgcttggg cttgtcacag gatcggaaat cagaaagagg 2941 aatccagatg actttaaacc aaagggaaaa ttgtgggctg atgacaacag gagcgtggat 3001 tacaatgaga ggatagattt tgaggctccc ccgagtgttt ggtctaggat agtcaacttt 3061 ggcacaggct ggggattctg ggtttctcca agtctcttta taacttcaac acacgtcata 3121 ccaaaaggaa tcactgaggc ctttggagtg cccataaacc aaatccaaat tcacaaatct 3181 ggagaatttt gccgcttgcg gtttccaaag ccaattaggc cagacgtgag tgggatgatc 3241 ttggaagagg gcgcccctga aggcactgtt gtgtctattc tcatcaaaag gacaacaggg 3301 gagctgatgc ctcttgcagt cagaatgggg actcatgcca caatgaaaat ccaaggtaga 3361 acggtgggtg gtcagatggg tatgcttctc actggctcaa atgctaaagg catggatcta 3421 ggcacaacgc caggtgactg cggatgtcca tacatataca aaaggggcaa tgaccttgtg 3481 gtcattgggg tgcacactgc agcagctcgt ggaggcaaca cggtcatatg tgccacacag 3541 ggaagtgagg gtgaagccac tcttgaagga gatgacaaca agggtaccta ttgtggagcc 3601 cccattttgg gacctggcaa tgcaccaaaa ttgagcacaa agacaaaatt ctggagatcc 3661 tctaacgcac cgcttccccc aggtacttat gaaccagcat accttggtgg gagagacccg 3721 cgcgtgaagg gaggcccatc tctgcagcaa gttatgagag atcaactcaa accttttaca 3781 gagcccagag ggaagccacc aaacccaaat gtcttagagt cagcaaagaa gactatcatc 3841 aatgttctgg aacaaaccat tgacccccct caaaagtggt catatgccca agcttgtgca 3901 tccctcgaca agacaacctc cagtggatac ccgcaccacg tccggaagaa tgactactgg 3961 agtggtgaat ccttcacagg aaaacttgca gatcaggctt caaaagcaaa tctcatgtat 4021 gaggaaggca agcacatgca accagtttac accgcagcac tcaaagacga gctcgtgaaa 4081 actgacaaaa tctatggcaa aatcaagaaa agactcctgt ggggctccga cctctccaca 4141 atgattcgat gcgccagagc atttggtggt ctcatggatg aattcaaagc aaattgtatt 4201 acactcccta tcagagttgg tatgagtatg aatgaagatg gtcccataat atttgagaaa 4261 cactccaggt acaggtacca ctatgatgct gattactccc gctgggactc cacacaacag 4321 cgggcagtgc tggaagcggc acttgaaatc atggtgagat tttctgctga gccacagctg 4381 gcacaaatag tggcagagga cctgctgtca ccaagtgtgg ttgatgtggg cgatttcaaa 4441 atcgctatca atgaaggctt accatctggc gtgccttgca cctcacaatg gaattctatt 4501 gcccactggt tacttacctt gtgtgccctt tctgaagtga caggattagg tcctgacatc 4561 atacaagcta actccatgta ctctttctat ggtgatgatg agattgtgag cacagacata 4621 aaattggacc cagagaaatt gaccgcaaag ctcaaagaat atggccttaa acccactcgg 4681 cccgacaaaa ctgaggggcc gttggtgatt agtgaggacc tgaatgggtt gactttcctc 4741 cgccgaacag tcacccgcga tccagcaggt tggtttggaa agttggacca aaactccatc 4801 ctcaggcagt tgtactggac aagaggaccc aaccatgaag accccagtga gaccatgata 4861 ccacacgcac aaagacctgt gcagctcatg gcactactag gagagtcctc cctacatgga 4921 ccctcatttt acagcaaggt tagcaaatta gtaatatctg aacttaaaga gggaggaatg 4981 gatttttatg tgcccagaca agagtcaatg ttcagatgga tgaggttctc agatctaagc 5041 acatgggagg gcgatcgcaa tctggctccc agttttgtga atgaagatgg cgtcgaatga 5101 cgccgctcca tctaatgatg gtgctgctgg tctcgtacca gagggcaata acgagaccct 5161 tcccctagaa ccagttgcgg gcgcagctat agccgcaccc gtcactggcc aaaataatat 5221 aattgacccc tggattagaa caaattttgt gcaagcacca aatggagagt tcacagtgtc 5281 acccagaaac tctcctggag aaattttatt aaatttagag ttgggccctg atttgaaccc 5341 ttatttggct catttgtcaa ggatgtacaa tgggtatgct ggtggagtgg aagttcaggt 5401 tctcctggca gggaacgcgt tcactgccgg aaagatcctc ttcgccgccg tcccgccaaa 5461 tttcccagtg gaattcttaa gcccagccca gatcacaatg ctcccacatt taatagtaga 5521 tgttaggact cttgaaccaa ttatgatccc actccctgac gttaggaata cattcttcca 5581 ttatagtaac cagcctaaca gccgcatgag attagtggct atgctctata ccccactcag 5641 atctaatggc tcaggtgatg atgtctttac tgtctcttgc agggttttga ctaggcctac 5701 tcctgatttt gagttcactt atttagtgcc accttctgtt gaatccaaaa ctaagccttt 5761 ttccttacct attttaaccc tttctgagct cacaaattcg aggtttccag tccccatcga 5821 ttcgcttttt accgcccaga ataatgtgtt gcaggtgcag tgtcaaaatg gcaggtgtac 5881 acttgatggc gagttacaag gcacaaccca gttgctccca actggcatct gcgcattcag 5941 aggacgggtg acagcacaaa ttaaccaacg tgacaggtgg cacatgcaac tgcaaaacct 6001 caatggtaca acatatgacc caactgatga tgtgccagcc ccgctgggta cacctgactt 6061 caagggcgtc gtgtttggga tggtaagcca aagaaatgtg ggtaatgatg cgcctggctc 6121 aaccagagcc caacaggcgt ggatttcaac ctatagcccc caatttgtcc ccaaattagg 6181 ttctgtcaat ctcagaatta gtaataatga tgatttccaa ttccagccga caaaattcac 6241 accagtgggc gtcaatgatg acgatgatga ccacccgttc agacagtggg aactaccaaa 6301 ctattcaggg gagcttacct tgaatatgaa tcttgccccc ccagttgctc caaattttcc 6361 tggtgaacaa ttgttattct tcagatcttt cgtgccatgc tcaggaggtt acaaccaagg 6421 tattatagat tgtcttattc cccaagaatg gatccaacat ttctatcagg aatcagcacc 6481 ctcccagtca gacgtggccc taatcaggta tgtcaacccc gatacgggac gtacactgtt 6541 tgaagcaaaa ttgcacagat ctggttacat tactgtggct cactctggag actatcctct 6601 tgttgttccg gctaatggac actttagatt tgattcttgg gtaaatcagt tttactcact 6661 cgccccaatg ggaactggga atgggcgaag gagggctcag taatggctgg ggctttcatt 6721 gcaggattgg caggcgacat gctcacgtca tctgtgggct cccttgtgaa cgcaggggca 6781 aacgccatca accaaaagat agactttgaa aataacaaac aactccagtc tgcttccttt 6841 cagcatgata aagagatgct ccaagcgcag gtgagggcaa ccaagcagct gcaatctgaa 6901 atgatagccc taaaacaggg ggttttggcc gcaggcggct tttcccccac tgatgcagca 6961 cggggatcca ttggtgcacc catgacaaag gtgcttgact ggtctggcac tcgatactgg 7021 gcgcccaatt ccacaaagac aactggctat tcgggacaat tcacctcttc acctgtgcat 7081 atgcctagcc caaatgctcc acaatcaaaa cctgcaaagc ctaggtctct agctccttcc 7141 tcttcttcta gtagtatcta cagtatgtac actcagtcta ctcatttgac atctggctct 7201 tctagtaatg cttcttctgc ctccacaaaa ttgacaaatt taagctctgg ctcctctcaa 7261 aacagaacag cagagtgggt aaatcaacag agaagtctta gccctttcat gagtggcgca 7321 cttaacatct cacatgtcac gccaccctca agtagggctt ccagttctgg gacggtctcg 7381 accgtgccca aggaagtttt ggactcctgg acgtctgcgt ttaacacaca cagacagccg 7441 ctcttcgcac acctcagagt gaggggggag tcacgtgttt agtgaaaaga //