Typing tool
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Typing tool
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Complete norovirus genomes
| PP267288 | GII.17 | |
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| GII.P17 |
ORF1: 1..5104
ORF2: 5085..6707
ORF3: 6707..7486
LOCUS PP267288 7494 bp RNA linear VRL 09-FEB-2024
DEFINITION Norovirus GII isolate 22040118 nonstructural polyprotein (ORF1)
gene, partial cds; and VP1 (ORF2) and VP2 (ORF3) genes, complete
cds.
ACCESSION PP267288
VERSION PP267288.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7494)
AUTHORS Tao,L., Wang,X. and Ding,J.
TITLE Direct Submission
JOURNAL Submitted (04-FEB-2024) Department of Microbiology Laboratary,
Nanjing Municipal Center for Disease Control and Prevention
affiliated to Nanjing Medical University, Zizhulin No. 2, Nanjing,
Jiangsu 210003, China
COMMENT ##Assembly-Data-START##
Assembly Method :: BWA v. 0.7.17-r1188
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7494
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="22040118"
/isolation_source="stool sample"
/host="Homo sapiens"
/db_xref="taxon:122929"
/country="China"
/collection_date="01-Apr-2022"
/note="genotype: GII.17[P17]"
gene <1..5104
/gene="ORF1"
CDS <1..5104
/gene="ORF1"
/codon_start=2
/product="nonstructural polyprotein"
/protein_id="WVN22352.1"
/translation="MASNDASAAVAGKNNNNDKEKSSSDSLFANMSVTFKKALGARSK
QPPPGETKQIQKPPRPPTPELVKKIPPPPPNGEDEPGIVYKVGEGVSGLPDLTTVAQP
DAQNTAYSVPPLSQREVGEAKEPLPGSILEMWDGEIYHYGLYVERGHVLGVHKPPAAI
SLAKIEITPLSLYWRVVYTPQYLIDPGTLKNLSGETFPYTAFDNNCYAFCCWVLDLND
SWLSRRMIQRTTGFFKPYQDWNRKPLPTMDEPKIKKAANAVLCALSSLFTRPIKDIIG
KLRPLNILNILATCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYEMQGPE
DLAVELVPVVMGGIGLVLGFTKEKIGKMLSSAATTLRACKDLGSYGLEILKLVMKWFF
PKKEEANELAMVRAIEDAVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARKLS
TKSASPDIVGTINALLARIAAARSLVHKAKEELSSRQRPVVVMISGRPGIGKTHLARE
LAKKVASTLSGDQRIGLVPRNGVDHWDAYKGERVVLWDDYGMSNPIQDALRLQELADT
CPLTLNCDRIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYADAPDIE
KAKRDFPGQPDMWKDHFRPDFSHIKLQLAPQGGFDKNGNTPHGKGVVKSLTIGSLIAR
ASGLLHERMDEFELQGSDLPTFNFDRNKVAAFRQLAAENKYGLMDTLRVGNQLKSVKT
LDELKQAIKNISIKKCQIVYNGCTYAMESDGRGKVVVEKVQNATVQTNNELVGALHHL
RSARIRYYVKCFQEAIYSLLQIAGAAFVTSRIVRRMNISNLWSKPPIEEGDEPEDRGG
CPKPRDEDDLTIDSRDIKVEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERN
GKYSIEEYLQDRDRYYEELAIAKATEEDFCEEEEIKIRQRIFRPTRKQRKEERATLGL
VTGSEIRKRNPDDFKPKGKLWADDNRSVDYNERIDFEAPPSVWSRIVNFGTGWGFWVS
PSLFITSTHVIPKGITEAFGVPINQIQIHKSGEFCRLRFPKPIRPDVSGMILEEGAPE
GTVVSILIKRTTGELMPLAVRMGTHATMKIQGRTVGGQMGMLLTGSNAKGMDLGTTPG
DCGCPYIYKRGNDLVVIGVHTAAARGGNTVICATQGSEGEATLEGDDNKGTYCGAPIL
GPGNAPKLSTKTKFWRSSNAPLPPGTYEPAYLGGRDPRVKGGPSLQQVMRDQLKPFTE
PRGKPPNPNVLESAKKTIINVLEQTIDPPQKWSYAQACASLDKTTSSGYPHHVRKNDY
WSGESFTGKLADQASKANLMYEEGKHMQPVYTAALKDELVKTDKIYGKIKKRLLWGSD
LSTMIRCARAFGGLMDEFKANCITLPIRVGMSMNEDGPIIFEKHSRYRYHYDADYSRW
DSTQQRAVLEAALEIMVRFSAEPQLAQIVAEDLLSPSVVDVGDFKIAINEGLPSGVPC
TSQWNSIAHWLLTLCALSEVTGLGPDIIQANSMYSFYGDDEIVSTDIKLDPEKLTAKL
KEYGLKPTRPDKTEGPLVISEDLNGLTFLRRTVTRDPAGWFGKLDQNSILRQLYWTRG
PNHEDPSETMIPHAQRPVQLMALLGESSLHGPSFYSKVSKLVISELKEGGMDFYVPRQ
ESMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
mat_peptide <1..994
/gene="ORF1"
/product="p48"
mat_peptide 995..2092
/gene="ORF1"
/product="NTPase"
mat_peptide 2093..2629
/gene="ORF1"
/product="p22"
mat_peptide 2630..3028
/gene="ORF1"
/product="VPg"
mat_peptide 3029..3571
/gene="ORF1"
/product="Pro"
mat_peptide 3572..5101
/gene="ORF1"
/product="RdRp"
gene 5085..6707
/gene="ORF2"
CDS 5085..6707
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="WVN22353.1"
/translation="MKMASNDAAPSNDGAAGLVPEGNNETLPLEPVAGAAIAAPVTGQ
NNIIDPWIRTNFVQAPNGEFTVSPRNSPGEILLNLELGPDLNPYLAHLSRMYNGYAGG
VEVQVLLAGNAFTAGKILFAAVPPNFPVEFLSPAQITMLPHLIVDVRTLEPIMIPLPD
VRNTFFHYSNQPNSRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPTPDFEFTYLVPP
SVESKTKPFSLPILTLSELTNSRFPVPIDSLFTAQNNVLQVQCQNGRCTLDGELQGTT
QLLPTGICAFRGRVTAQINQRDRWHMQLQNLNGTTYDPTDDVPAPLGTPDFKGVVFGM
VSQRNVGNDAPGSTRAQQAWISTYSPQFVPKLGSVNLRISNNDDFQFQPTKFTPVGVN
DDDDDHPFRQWELPNYSGELTLNMNLAPPVAPNFPGEQLLFFRSFVPCSGGYNQGIID
CLIPQEWIQHFYQESAPSQSDVALIRYVNPDTGRTLFEAKLHRSGYITVAHSGDYPLV
VPANGHFRFDSWVNQFYSLAPMGTGNGRRRAQ"
gene 6707..7486
/gene="ORF3"
CDS 6707..7486
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="WVN22354.1"
/translation="MAGAFIAGLAGDMLTSSVGSLVNAGANAINQKIDFENNKQLQSA
SFQHDKEMLQAQVRATKQLQSEMIALKQGVLAAGGFSPTDAARGSIGAPMTKVLDWSG
TRYWAPNSTKTTGYSGQFTSSPVHMPSPNAPQSKPAKPRSLAPSSSSSSIYSMYTQST
HLTSGSSSNASSASTKLTNLSSGSSQNRTAEWVNQQRSLSPFMSGALNISHVTPPSSR
ASSSGTVSTVPKEVLDSWTSAFNTHRQPLFAHLRVRGESRV"
ORIGIN
1 gatggcgtct aacgacgctt ccgctgccgt tgctggcaaa aacaacaaca acgacaagga
61 aaaatcttca agtgacagct tgtttgctaa tatgtctgtc acttttaaga aagccctcgg
121 ggcgcggtct aaacaaccgc ccccgggaga aacaaaacaa atacaaaaac caccaaggcc
181 accgacaccg gaattggtga agaaaatacc tccaccccca cccaatggcg aggacgaacc
241 agggatagtg tataaggtgg gagagggtgt gtctgggctg cccgacctaa caactgtggc
301 acaacctgac gcacaaaaca cagcttatag tgttccccca cttagccaga gagaagtcgg
361 cgaagctaaa gaaccgctgc ctggctccat tctggaaatg tgggatggtg agatctacca
421 ctatgggctg tatgttgagc gggggcatgt gctcggagta cacaaaccac ctgctgcaat
481 aagccttgcc aaaattgaaa taacaccgtt gtctctctac tggagagtgg tctacactcc
541 ccagtatttg atagatccag gaactctcaa gaacttgagt ggagagactt tcccatacac
601 ggcctttgat aacaactgtt atgccttctg ttgttgggtc ctagacctca acgactcctg
661 gcttagcagg agaatgattc aaagaacaac tggatttttc aaaccttatc aggattggaa
721 cagaaaaccc ttaccaacca tggatgaacc gaaaatcaag aaggccgcga atgctgtcct
781 atgcgctctc tcctcactct tcactagacc catcaaggac atcattggga agcttagacc
841 actgaacatt cttaatatac tggcaacctg cgattggact tttgcaggca tagtggaatc
901 cttgatcctt cttgctgaac tctttggggt gttctggaca cccccagatg tgtctgcgat
961 gattgctccc ttgctcggtg actacgagat gcagggcccc gaagacctgg ccgtggaact
1021 tgtgcccgtg gtgatgggag gaataggttt ggtgttagga ttcaccaaag aaaagatcgg
1081 caagatgctt tcgtcagctg cgaccacact tagggcctgc aaggatctag gatcttatgg
1141 attggagata cttaaattgg tcatgaagtg gttcttcccc aagaaggagg aggctaacga
1201 actagccatg gtaagggcca ttgaggatgc agtcctggat ttggaggcaa tagaaaacaa
1261 tcatatgacc acccttctca aggataaaga cagcctggcc acatacatga ggactcttga
1321 cttggaagaa gagaaagcaa ggaaactgtc aaccaaatcg gcgtcacctg acatcgtggg
1381 tacaataaac gcattgttgg ctaggatagc agccgccagg tcactggtcc acaaggctaa
1441 ggaggagctc tcgagcagac agagacctgt tgttgtaatg atatcaggta gaccaggtat
1501 aggaaagacc catctggcca gagagctagc caagaaagtt gcgtcaacac tgtcaggcga
1561 ccaaaggatt ggactggtgc ctaggaatgg cgtcgaccat tgggacgcct acaagggaga
1621 aagggtggtc ctgtgggatg attatggtat gagcaaccct atacaagacg cactgaggct
1681 ccaagaattg gctgacacct gtcctctgac cctaaattgt gataggattg aaaataaagg
1741 aaaagtgttc gacagtgatg ccataattat aacaaccaac cttgcaaacc cagcaccact
1801 agactatgtc aactttgagg cctgctctag acgcatagac ttcttggtgt atgcagacgc
1861 acctgacatt gagaaggcta agcgtgattt ccctggccaa ccagatatgt ggaaagatca
1921 ttttagacca gacttctcac acattaaact tcagctggca ccacagggag gttttgacaa
1981 aaatggcaac accccacatg gcaaaggtgt ggtaaagtcc ctgacgattg gttctctgat
2041 cgccagggcc tccggcttgc tccacgagag aatggatgaa ttcgagctcc aaggctctga
2101 cctgccaacc ttcaattttg accgcaacaa agtcgccgcc ttcagacaat tagcagctga
2161 aaacaaatat ggtcttatgg acacattgag ggtcggcaac caactgaaaa gtgttaagac
2221 cctggatgag ctgaagcagg ccataaagaa catcagtatc aagaagtgtc agatagtgta
2281 taatggatgc acctatgcca tggaatctga tgggaggggc aaggttgtgg ttgagaaggt
2341 acaaaacgca acagttcaaa ccaacaatga acttgtaggg gcgctccacc acctgagatc
2401 cgcaaggata agatactatg ttaaatgttt tcaagaagcc atttactctc tactccaaat
2461 tgctggtgca gcctttgtca cctcacgcat cgtgaggcgc atgaacatat caaacctctg
2521 gtcgaagcca cccatcgagg agggtgacga gcctgaagac agaggaggat gccccaagcc
2581 cagggatgaa gatgacctca ctattgactc tagagacatt aaagtggaag ggaagaaggg
2641 caagaacaag tctggccggg gcaagaaaca cacagccttc tcttccaagg gcctcagtga
2701 tgaagagtac gatgagtaca agagaatcag agaggagagg aatggcaaat actcaataga
2761 ggaatacctc caagataggg acagatacta tgaagagctt gccattgcta aggccactga
2821 ggaggacttc tgtgaggagg aggagattaa aatacgccag agaatcttcc gacccaccag
2881 gaagcagcgg aaagaggaaa gggccacgct tgggcttgtc acaggatcgg aaatcagaaa
2941 gaggaatcca gatgacttta aaccaaaggg aaaattgtgg gctgatgaca acaggagcgt
3001 ggattacaat gagaggatag attttgaggc tcccccgagt gtttggtcta ggatagtcaa
3061 ctttggcaca ggctggggat tctgggtttc tccaagtctc tttataactt caacacacgt
3121 cataccaaaa ggaatcactg aggcctttgg agtgcccata aaccaaatcc aaattcacaa
3181 atctggagaa ttttgccgct tgcggtttcc aaagccaatt aggccagacg tgagtgggat
3241 gatcttggaa gagggcgccc ctgaaggcac tgttgtgtct attctcatca aaaggacaac
3301 aggggagctg atgcctcttg cagtcagaat ggggactcat gccacaatga aaatccaagg
3361 tagaacggtg ggtggtcaga tgggtatgct tctcactggc tcaaatgcta aaggcatgga
3421 tctaggcaca acgccaggtg actgcggatg tccatacata tacaaaaggg gcaatgacct
3481 tgtggtcatt ggggtgcaca ctgcagcagc tcgtggaggc aacacggtca tatgtgccac
3541 acagggaagt gagggtgaag ccactcttga aggagatgac aacaagggta cctattgtgg
3601 agcccccatt ttgggacctg gcaatgcacc aaaattgagc acaaagacaa aattctggag
3661 atcctctaac gcaccgcttc ccccaggtac ttatgaacca gcataccttg gtgggagaga
3721 cccgcgcgtg aagggaggcc catctctgca gcaagttatg agagatcaac tcaaaccttt
3781 tacagagccc agagggaagc caccaaaccc aaatgtctta gagtcagcaa agaagactat
3841 catcaatgtt ctggaacaaa ccattgaccc ccctcaaaag tggtcatatg cccaagcttg
3901 tgcatccctc gacaagacaa cctccagtgg atacccgcac cacgtccgga agaatgacta
3961 ctggagtggt gaatccttca caggaaaact tgcagatcag gcttcaaaag caaatctcat
4021 gtatgaggaa ggcaagcaca tgcaaccagt ttacaccgca gcactcaaag acgagctcgt
4081 gaaaactgac aaaatctatg gcaaaatcaa gaaaagactc ctgtggggct ccgacctctc
4141 cacaatgatt cgatgcgcca gagcatttgg tggtctcatg gatgaattca aagcaaattg
4201 tattacactc cctatcagag ttggtatgag tatgaatgaa gatggtccca taatatttga
4261 gaaacactcc aggtacaggt accactatga tgctgattac tcccgctggg actccacaca
4321 acagcgggca gtgctggaag cggcacttga aatcatggtg agattttctg ctgagccaca
4381 gctggcacaa atagtggcag aggacctgct gtcaccaagt gtggttgatg tgggcgattt
4441 caaaatcgct atcaatgaag gcttaccatc tggcgtgcct tgcacctcac aatggaattc
4501 tattgcccac tggttactta ccttgtgtgc cctttctgaa gtgacaggat taggtcctga
4561 catcatacaa gctaactcca tgtactcttt ctatggtgat gatgagattg tgagcacaga
4621 cataaaattg gacccagaga aattgaccgc aaagctcaaa gaatatggcc ttaaacccac
4681 tcggcccgac aaaactgagg ggccgttggt gattagtgag gacctgaatg ggttgacttt
4741 cctccgccga acagtcaccc gcgatccagc aggttggttt ggaaagttgg accaaaactc
4801 catcctcagg cagttgtact ggacaagagg acccaaccat gaagacccca gtgagaccat
4861 gataccacac gcacaaagac ctgtgcagct catggcacta ctaggagagt cctccctaca
4921 tggaccctca ttttacagca aggttagcaa attagtaata tctgaactta aagagggagg
4981 aatggatttt tatgtgccca gacaagagtc aatgttcaga tggatgaggt tctcagatct
5041 aagcacatgg gagggcgatc gcaatctggc tcccagtttt gtgaatgaag atggcgtcga
5101 atgacgccgc tccatctaat gatggtgctg ctggtctcgt accagagggc aataacgaga
5161 cccttcccct agaaccagtt gcgggcgcag ctatagccgc acccgtcact ggccaaaata
5221 atataattga cccctggatt agaacaaatt ttgtgcaagc accaaatgga gagttcacag
5281 tgtcacccag aaactctcct ggagaaattt tattaaattt agagttgggc cctgatttga
5341 acccttattt ggctcatttg tcaaggatgt acaatgggta tgctggtgga gtggaagttc
5401 aggttctcct ggcagggaac gcgttcactg ccggaaagat cctcttcgcc gccgtcccgc
5461 caaatttccc agtggaattc ttaagcccag cccagatcac aatgctccca catttaatag
5521 tagatgttag gactcttgaa ccaattatga tcccactccc tgacgttagg aatacattct
5581 tccattatag taaccagcct aacagccgca tgagattagt ggctatgctc tataccccac
5641 tcagatctaa tggctcaggt gatgatgtct ttactgtctc ttgcagggtt ttgactaggc
5701 ctactcctga ttttgagttc acttatttag tgccaccttc tgttgaatcc aaaactaagc
5761 ctttttcctt acctatttta accctttctg agctcacaaa ttcgaggttt ccagtcccca
5821 tcgattcgct ttttaccgcc cagaataatg tgttgcaggt gcagtgtcaa aatggcaggt
5881 gtacacttga tggcgagtta caaggcacaa cccagttgct cccaactggc atctgcgcat
5941 tcagaggacg ggtgacagca caaattaacc aacgtgacag gtggcacatg caactgcaaa
6001 acctcaatgg tacaacatat gacccaactg atgatgtgcc agccccgctg ggtacacctg
6061 acttcaaggg cgtcgtgttt gggatggtaa gccaaagaaa tgtgggtaat gatgcgcctg
6121 gctcaaccag agcccaacag gcgtggattt caacctatag cccccaattt gtccccaaat
6181 taggttctgt caatctcaga attagtaata atgatgattt ccaattccag ccgacaaaat
6241 tcacaccagt gggcgtcaat gatgacgatg atgaccaccc gttcagacag tgggaactac
6301 caaactattc aggggagctt accttgaata tgaatcttgc ccccccagtt gctccaaatt
6361 ttcctggtga acaattgtta ttcttcagat ctttcgtgcc atgctcagga ggttacaacc
6421 aaggtattat agattgtctt attccccaag aatggatcca acatttctat caggaatcag
6481 caccctccca gtcagacgtg gccctaatca ggtatgtcaa ccccgatacg ggacgtacac
6541 tgtttgaagc aaaattgcac agatctggtt acattactgt ggctcactct ggagactatc
6601 ctcttgttgt tccggctaat ggacacttta gatttgattc ttgggtaaat cagttttact
6661 cactcgcccc aatgggaact gggaatgggc gaaggagggc tcagtaatgg ctggggcttt
6721 cattgcagga ttggcaggcg acatgctcac gtcatctgtg ggctcccttg tgaacgcagg
6781 ggcaaacgcc atcaaccaaa agatagactt tgaaaataac aaacaactcc agtctgcttc
6841 ctttcagcat gataaagaga tgctccaagc gcaggtgagg gcaaccaagc agctgcaatc
6901 tgaaatgata gccctaaaac agggggtttt ggccgcaggc ggcttttccc ccactgatgc
6961 agcacgggga tccattggtg cacccatgac aaaggtgctt gactggtctg gcactcgata
7021 ctgggcgccc aattccacaa agacaactgg ctattcggga caattcacct cttcacctgt
7081 gcatatgcct agcccaaatg ctccacaatc aaaacctgca aagcctaggt ctctagctcc
7141 ttcctcttct tctagtagta tctacagtat gtacactcag tctactcatt tgacatctgg
7201 ctcttctagt aatgcttctt ctgcctccac aaaattgaca aatttaagct ctggctcctc
7261 tcaaaacaga acagcagagt gggtaaatca acagagaagt cttagccctt tcatgagtgg
7321 cgcacttaac atctcacatg tcacgccacc ctcaagtagg gcttccagtt ctgggacggt
7381 ctcgaccgtg cccaaggaag ttttggactc ctggacgtct gcgtttaaca cacacagaca
7441 gccgctcttc gcacacctca gagtgagggg ggagtcacgt gtttagtgaa aaga
//