Typing tool
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Typing tool
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Complete norovirus genomes
| PP267286 | GII.17 | |
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| GII.P17 |
ORF1: 1..5100
ORF2: 5081..6703
ORF3: 6703..7482
LOCUS PP267286 7489 bp RNA linear VRL 09-FEB-2024
DEFINITION Norovirus GII isolate 22040114 nonstructural polyprotein (ORF1)
gene, partial cds; and VP1 (ORF2) and VP2 (ORF3) genes, complete
cds.
ACCESSION PP267286
VERSION PP267286.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norovirus norwalkense.
REFERENCE 1 (bases 1 to 7489)
AUTHORS Tao,L., Wang,X. and Ding,J.
TITLE Direct Submission
JOURNAL Submitted (04-FEB-2024) Department of Microbiology Laboratary,
Nanjing Municipal Center for Disease Control and Prevention
affiliated to Nanjing Medical University, Zizhulin No. 2, Nanjing,
Jiangsu 210003, China
COMMENT ##Assembly-Data-START##
Assembly Method :: BWA v. 0.7.17-r1188
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7489
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="22040114"
/isolation_source="stool sample"
/host="Homo sapiens"
/db_xref="taxon:122929"
/geo_loc_name="China"
/collection_date="01-Apr-2022"
/note="genotype: GII.17[P17]"
gene <1..5100
/gene="ORF1"
CDS <1..5100
/gene="ORF1"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="WVN22346.1"
/translation="ASNDASAAVAGKNNNNDKEKSSSDSLFANMSVTFKKALGARSKQ
PPPGETKQIQKPPRPPTPELVKKIPPPPPNGEDEPGIVYKVGEGVSGLPDLTTVAQPD
AQNTAYSVPPLSQREVGEAKEPLPGSILEMWDGEIYHYGLYVERGHVLGVHKPPAAIS
LAKIEITPLSLYWRVVYTPQYLIDPGTLKNLSGETFPYTAFDNNCYAFCCWVLDLNDS
WLSRRMIQRTTGFFKPYQDWNRKPLPTMDEPKIKKAANAVLCALSSLFTRPIKDIIGK
LRPLNILNILATCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYEMQGPED
LAVELVPVVMGGIGLVLGFTKEKIGKMLSSAATTLRACKDLGSYGLEILKLVMKWFFP
KKEEANELAMVRAIEDAVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARKLST
KSASPDIVGTINALLARIAAARSLVHKAKEELSSRQRPVVVMISGRPGIGKTHLAREL
AKKVASTLSGDQRIGLVPRNGVDHWDAYKGERVVLWDDYGMSNPIQDALRLQELADTC
PLTLNCDRIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYADAPDIEK
AKRDFPGQPDMWKDHFRPDFSHIKLQLAPQGGFDKNGNTPHGKGVVKSLTIGSLIARA
SGLLHERMDEFELQGSDLPTFNFDRNKVAAFRQLAAENKYGLMDTLRVGNQLKSVKTL
DELKQAIKNISIKKCQIVYNGCTYAMESDGRGKVVVEKVQNATVQTNNELVGALHHLR
SARIRYYVKCFQEAIYSLLQIAGAAFVTSRIVRRMNISNLWSKPPIEEGDEPEDRGGC
PKPRDEDDLTIDSRDIKVEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERNG
KYSIEEYLQDRDRYYEELAIAKATEEDFCEEEEIKIRQRIFRPTRKQRKEERATLGLV
TGSEIRKRNPDDFKPKGKLWADDNRSVDYNERIDFEAPPSVWSRIVNFGTGWGFWVSP
SLFITSTHVIPKGITEAFGVPINQIQIHKSGEFCRLRFPKPIRPDVSGMILEEGAPEG
TVVSILIKRTTGELMPLAVRMGTHATMKIQGRTVGGQMGMLLTGSNAKGMDLGTTPGD
CGCPYIYKRGNDLVVIGVHTAAARGGNTVICATQGSEGEATLEGDDNKGTYCGAPILG
PGNAPKLSTKTKFWRSSNAPLPPGTYEPAYLGGRDPRVKGGPSLQQVMRDQLKPFTEP
RGKPPNPNVLESAKKTIINVLEQTIDPPQKWSYAQACASLDKTTSSGYPHHVRKNDYW
SGESFTGKLADQASKANLMYEEGKHMQPVYTAALKDELVKTDKIYGKIKKRLLWGSDL
STMIRCARAFGGLMDEFKANCITLPIRVGMSMNEDGPIIFEKHSRYRYHYDADYSRWD
STQQRAVLEAALEIMVRFSAEPQLAQIVAEDLLSPSVVDVGDFKIAINEGLPSGVPCT
SQWNSIAHWLLTLCALSEVTGLGPDIIQANSMYSFYGDDEIVSTDIKLDPEKLTAKLK
EYGLKPTRPDKTEGPLVISEDLNGLTFLRRTVTRDPAGWFGKLDQNSILRQLYWTRGP
NHEDPSETMIPHAQRPVQLMALLGESSLHGPSFYSKVSKLVISELKEGGMDFYVPRQE
SMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
mat_peptide <1..990
/gene="ORF1"
/product="p48"
mat_peptide 991..2088
/gene="ORF1"
/product="NTPase"
mat_peptide 2089..2625
/gene="ORF1"
/product="p22"
mat_peptide 2626..3024
/gene="ORF1"
/product="VPg"
mat_peptide 3025..3567
/gene="ORF1"
/product="Pro"
mat_peptide 3568..5097
/gene="ORF1"
/product="RdRp"
gene 5081..6703
/gene="ORF2"
CDS 5081..6703
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="WVN22347.1"
/translation="MKMASNDAAPSNDGAAGLVPEGNNETLPLEPVAGAAIAAPVTGQ
NNIIDPWIRTNFVQAPNGEFTVSPRNSPGEILLNLELGPDLNPYLAHLSRMYNGYAGG
VEVQVLLAGNAFTAGKILFAAVPPNFPVEFLSPAQITMLPHLIVDVRTLEPIMIPLPD
VRNTFFHYSNQPNSRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPTPDFEFTYLVPP
SVESKTKPFSLPILTLSELTNSRFPVPIDSLFTAQNNVLQVQCQNGRCTLDGELQGTT
QLLPTGICAFRGRVTAQINQRDRWHMQLQNLNGTTYDPTDDVPAPLGTPDFKGVVFGM
VSQRNVGNDAPGSTRAQQAWISTYSPQFVPKLGSVNLRISNNDDFQFQPTKFTPVGVN
DDDDDHPFRQWELPNYSGELTLNMNLAPPVAPNFPGEQLLFFRSFVPCSGGYNQGIID
CLIPQEWIQHFYQESAPSQSDVALIRYVNPDTGRTLFEAKLHRSGYITVAHSGDYPLV
VPANGHFRFDSWVNQFYSLAPMGTGNGRRRAQ"
gene 6703..7482
/gene="ORF3"
CDS 6703..7482
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="WVN22348.1"
/translation="MAGAFIAGLAGDMLTSSVGSLVNAGANAINQKIDFENNKQLQSA
SFQHDKEMLQAQVRATKQLQSEMIALKQGVLAAGGFSPTDAARGSIGAPMTKVLDWSG
TRYWAPNSTKTTGYSGQFTSSPVHMPSPNAPQSKPAKPRSLAPSSSSSSIYSMYTQST
HLTSGSSSNASSASTKLTNLSSGSSQNRTAEWVNQQRSLSPFMSGALNISHVTPPSSR
ASSSGTVSTVPKEVLDSWTSAFNTHRQPLFAHLRVRGESRV"
ORIGIN
1 gcgtctaacg acgcttccgc tgccgttgct ggcaaaaaca acaacaacga caaggaaaaa
61 tcttcaagtg acagcttgtt tgctaatatg tctgtcactt ttaagaaagc cctcggggcg
121 cggtctaaac aaccgccccc gggagaaaca aaacaaatac aaaaaccacc aaggccaccg
181 acaccggaat tggtgaagaa aatacctcca cccccaccca atggcgagga cgaaccaggg
241 atagtgtata aggtgggaga gggtgtgtct gggctgcccg acctaacaac tgtggcacaa
301 cctgacgcac aaaacacagc ttatagtgtt cccccactta gccagagaga agtcggcgaa
361 gctaaagaac cgctgcctgg ctccattctg gaaatgtggg atggtgagat ctaccactat
421 gggctgtatg ttgagcgggg gcatgtgctc ggagtacaca aaccacctgc tgcaataagc
481 cttgccaaaa ttgaaataac accgttgtct ctctactgga gagtggtcta cactccccag
541 tatttgatag atccaggaac tctcaagaac ttgagtggag agactttccc atacacggcc
601 tttgataaca actgttatgc cttctgttgt tgggtcctag acctcaacga ctcctggctt
661 agcaggagaa tgattcaaag aacaactgga tttttcaaac cttatcagga ttggaacaga
721 aaacccttac caaccatgga tgaaccgaaa atcaagaagg ccgcgaatgc tgtcctatgc
781 gctctctcct cactcttcac tagacccatc aaggacatca ttgggaagct tagaccactg
841 aacattctta atatactggc aacctgcgat tggacttttg caggcatagt ggaatccttg
901 atccttcttg ctgaactctt tggggtgttc tggacacccc cagatgtgtc tgcgatgatt
961 gctcccttgc tcggtgacta cgagatgcaa ggccccgaag acctggccgt ggaacttgtg
1021 cccgtggtga tgggaggaat aggtttggtg ttaggattca ccaaagaaaa gatcggcaag
1081 atgctttcgt cagctgcgac cacacttagg gcctgcaagg atctaggatc ttatggattg
1141 gagatactta aattggtcat gaagtggttc ttccccaaga aggaggaggc taacgaacta
1201 gccatggtaa gggccattga ggatgcagtc ctggatttgg aggcaataga aaacaatcat
1261 atgaccaccc ttctcaagga taaagacagc ctggccacat acatgaggac tcttgacttg
1321 gaagaagaga aagcaaggaa actgtcaacc aaatcggcgt cacctgacat cgtgggtaca
1381 ataaacgcat tgttggctag gatagcagcc gccaggtcac tggtccacaa ggctaaggag
1441 gagctctcga gcagacagag acctgttgtt gtaatgatat caggtagacc aggtatagga
1501 aagacccatc tggccagaga gctagccaag aaagttgcgt caacactgtc aggcgaccaa
1561 aggattggac tggtgcctag gaatggcgtc gaccattggg acgcctacaa gggagaaagg
1621 gtggtcctgt gggatgatta tggtatgagc aaccctatac aagacgcact gaggctccaa
1681 gaattggctg acacctgtcc tctgacccta aattgtgata ggattgaaaa taaaggaaaa
1741 gtgttcgaca gtgatgccat aattataaca accaaccttg caaacccagc accactagac
1801 tatgtcaact ttgaggcctg ctctagacgc atagacttct tggtgtatgc agacgcacct
1861 gacattgaga aggctaagcg tgatttccct ggccaaccag atatgtggaa agatcatttt
1921 agaccagact tctcacacat taaacttcag ctggcaccac agggaggttt tgacaaaaat
1981 ggcaacaccc cacatggcaa aggtgtggta aagtccctga cgattggttc tctgatcgcc
2041 agggcctccg gcttgctcca cgagagaatg gatgaattcg agctccaagg ctctgacctg
2101 ccaaccttca attttgaccg caacaaagtc gccgccttca gacaattagc agctgaaaac
2161 aaatatggtc ttatggacac attgagggtc ggcaaccaac tgaaaagtgt taagaccctg
2221 gatgagctga agcaggccat aaagaacatc agtatcaaga agtgtcagat agtgtataat
2281 ggatgcacct atgccatgga atctgatggg aggggcaagg ttgtggttga gaaggtacaa
2341 aacgcaacag ttcaaaccaa caatgaactt gtaggggcgc tccaccacct gagatccgca
2401 aggataagat actatgttaa atgttttcaa gaagccattt actctctact ccaaattgct
2461 ggtgcagcct ttgtcacctc acgcatcgtg aggcgcatga acatatcaaa cctctggtcg
2521 aagccaccca tcgaggaggg tgacgagcct gaagacagag gaggatgccc caagcccagg
2581 gatgaagatg acctcactat tgactctaga gacattaaag tggaagggaa gaagggcaag
2641 aacaagtctg gccggggcaa gaaacacaca gccttctctt ccaagggcct cagtgatgaa
2701 gagtacgatg agtacaagag aatcagagag gagaggaatg gcaaatactc aatagaggaa
2761 tacctccaag atagggacag atactatgaa gagcttgcca ttgctaaggc cactgaggag
2821 gacttctgtg aggaggagga gattaaaata cgccagagaa tcttccgacc caccaggaag
2881 cagcggaaag aggaaagggc cacgcttggg cttgtcacag gatcggaaat cagaaagagg
2941 aatccagatg actttaaacc aaagggaaaa ttgtgggctg atgacaacag gagcgtggat
3001 tacaatgaga ggatagattt tgaggctccc ccgagtgttt ggtctaggat agtcaacttt
3061 ggcacaggct ggggattctg ggtttctcca agtctcttta taacttcaac acacgtcata
3121 ccaaaaggaa tcactgaggc ctttggagtg cccataaacc aaatccaaat tcacaaatct
3181 ggagaatttt gccgcttgcg gtttccaaag ccaattaggc cagacgtgag tgggatgatc
3241 ttggaagagg gcgcccctga aggcactgtt gtgtctattc tcatcaaaag gacaacaggg
3301 gagctgatgc ctcttgcagt cagaatgggg actcatgcca caatgaaaat ccaaggtaga
3361 acggtgggtg gtcagatggg tatgcttctc actggctcaa atgctaaagg catggatcta
3421 ggcacaacgc caggtgactg cggatgtcca tacatataca aaaggggcaa tgaccttgtg
3481 gtcattgggg tgcacactgc agcagctcgt ggaggcaaca cggtcatatg tgccacacag
3541 ggaagtgagg gtgaagccac tcttgaagga gatgacaaca agggtaccta ttgtggagcc
3601 cccattttgg gacctggcaa tgcaccaaaa ttgagcacaa agacaaaatt ctggagatcc
3661 tctaacgcac cgcttccccc aggtacttat gaaccagcat accttggtgg gagagacccg
3721 cgcgtgaagg gaggcccatc tctgcagcaa gttatgagag atcaactcaa accttttaca
3781 gagcccagag ggaagccacc aaacccaaat gtcttagagt cagcaaagaa gactatcatc
3841 aatgttctgg aacaaaccat tgacccccct caaaagtggt catatgccca agcttgtgca
3901 tccctcgaca agacaacctc cagtggatac ccgcaccacg tccggaagaa tgactactgg
3961 agtggtgaat ccttcacagg aaaacttgca gatcaggctt caaaagcaaa tctcatgtat
4021 gaggaaggca agcacatgca accagtttac accgcagcac tcaaagacga gctcgtgaaa
4081 actgacaaaa tctatggcaa aatcaagaaa agactcctgt ggggctccga cctctccaca
4141 atgattcgat gcgccagagc atttggtggt ctcatggatg aattcaaagc aaattgtatt
4201 acactcccta tcagagttgg tatgagtatg aatgaagatg gtcccataat atttgagaaa
4261 cactccaggt acaggtacca ctatgatgct gattactccc gctgggactc cacacaacag
4321 cgggcagtgc tggaagcggc acttgaaatc atggtgagat tttctgctga gccacagctg
4381 gcacaaatag tggcagagga cctgctgtca ccaagtgtgg ttgatgtggg cgatttcaaa
4441 atcgctatca atgaaggctt accatctggc gtgccttgca cctcacaatg gaattctatt
4501 gcccactggt tacttacctt gtgtgccctt tctgaagtga caggattagg tcctgacatc
4561 atacaagcta actccatgta ctctttctat ggtgatgatg agattgtgag cacagacata
4621 aaattggacc cagagaaatt gaccgcaaag ctcaaagaat atggccttaa acccactcgg
4681 cccgacaaaa ctgaggggcc gttggtgatt agtgaggacc tgaatgggtt gactttcctc
4741 cgccgaacag tcacccgcga tccagcaggt tggtttggaa agttggacca aaactccatc
4801 ctcaggcagt tgtactggac aagaggaccc aaccatgaag accccagtga gaccatgata
4861 ccacacgcac aaagacctgt gcagctcatg gcactactag gagagtcctc cctacatgga
4921 ccctcatttt acagcaaggt tagcaaatta gtaatatctg aacttaaaga gggaggaatg
4981 gatttttatg tgcccagaca agagtcaatg ttcagatgga tgaggttctc agatctaagc
5041 acatgggagg gcgatcgcaa tctggctccc agttttgtga atgaagatgg cgtcgaatga
5101 cgccgctcca tctaatgatg gtgctgctgg tctcgtacca gagggcaata acgagaccct
5161 tcccctagaa ccagttgcgg gcgcagctat agccgcaccc gtcactggcc aaaataatat
5221 aattgacccc tggattagaa caaattttgt gcaagcacca aatggagagt tcacagtgtc
5281 acccagaaac tctcctggag aaattttatt aaatttagag ttgggccctg atttgaaccc
5341 ttatttggct catttgtcaa ggatgtacaa tgggtatgct ggtggagtgg aagttcaggt
5401 tctcctggca gggaacgcgt tcactgccgg aaagatcctc ttcgccgccg tcccgccaaa
5461 tttcccagtg gaattcttaa gcccagccca gatcacaatg ctcccacatt taatagtaga
5521 tgttaggact cttgaaccaa ttatgatccc actccctgac gttaggaata cattcttcca
5581 ttatagtaac cagcctaaca gccgcatgag attagtggct atgctctata ccccactcag
5641 atctaatggc tcaggtgatg atgtctttac tgtctcttgc agggttttga ctaggcctac
5701 tcctgatttt gagttcactt atttagtgcc accttctgtt gaatccaaaa ctaagccttt
5761 ttccttacct attttaaccc tttctgagct cacaaattcg aggtttccag tccccatcga
5821 ttcgcttttt accgcccaga ataatgtgtt gcaggtgcag tgtcaaaatg gcaggtgtac
5881 acttgatggc gagttacaag gcacaaccca gttgctccca actggcatct gcgcattcag
5941 aggacgggtg acagcacaaa ttaaccaacg tgacaggtgg cacatgcaac tgcaaaacct
6001 caatggtaca acatatgacc caactgatga tgtgccagcc ccgctgggta cacctgactt
6061 caagggcgtc gtgtttggga tggtaagcca aagaaatgtg ggtaatgatg cgcctggctc
6121 aaccagagcc caacaggcgt ggatttcaac ctatagcccc caatttgtcc ccaaattagg
6181 ttctgtcaat ctcagaatta gtaataatga tgatttccaa ttccagccga caaaattcac
6241 accagtgggc gtcaatgatg acgatgatga ccacccgttc agacagtggg aactaccaaa
6301 ctattcaggg gagcttacct tgaatatgaa tcttgccccc ccagttgctc caaattttcc
6361 tggtgaacaa ttgttattct tcagatcttt cgtgccatgc tcaggaggtt acaaccaagg
6421 tattatagat tgtcttattc cccaagaatg gatccaacat ttctatcagg aatcagcacc
6481 ctcccagtca gacgtggccc taatcaggta tgtcaacccc gatacgggac gtacactgtt
6541 tgaagcaaaa ttgcacagat ctggttacat tactgtggct cactctggag actatcctct
6601 tgttgttccg gctaatggac actttagatt tgattcttgg gtaaatcagt tttactcact
6661 cgccccaatg ggaactggga atgggcgaag gagggctcag taatggctgg ggctttcatt
6721 gcaggattgg caggcgacat gctcacgtca tctgtgggct cccttgtgaa cgcaggggca
6781 aacgccatca accaaaagat agactttgaa aataacaaac aactccagtc tgcttccttt
6841 cagcatgata aagagatgct ccaagcgcag gtgagggcaa ccaagcagct gcaatctgaa
6901 atgatagccc taaaacaggg ggttttggcc gcaggcggct tttcccccac tgatgcagca
6961 cggggatcca ttggtgcacc catgacaaag gtgcttgact ggtctggcac tcgatactgg
7021 gcgcccaatt ccacaaagac aactggctat tcgggacaat tcacctcttc acctgtgcat
7081 atgcctagcc caaatgctcc acaatcaaaa cctgcaaagc ctaggtctct agctccttcc
7141 tcttcttcta gtagtatcta cagtatgtac actcagtcta ctcatttgac atctggctct
7201 tctagtaatg cttcttctgc ctccacaaaa ttgacaaatt taagctctgg ctcctctcaa
7261 aacagaacag cagagtgggt aaatcaacag agaagtctta gccctttcat gagtggcgca
7321 cttaacatct cacatgtcac gccaccctca agtagggctt ccagttctgg gacggtctcg
7381 accgtgccca aggaagtttt ggactcctgg acgtctgcgt ttaacacaca cagacagccg
7441 ctcttcgcac acctcagagt gaggggggag tcacgtgttt agtgaaaag
//