Typing tool
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Typing tool
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Complete norovirus genomes
| PP267282 | GII.17 | |
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| GII.P17 |
ORF1: 1..5098
ORF2: 5079..6701
ORF3: 6701..7480
LOCUS PP267282 7488 bp RNA linear VRL 09-FEB-2024
DEFINITION Norovirus GII isolate 22040110 nonstructural polyprotein (ORF1)
gene, partial cds; and VP1 (ORF2) and VP2 (ORF3) genes, complete
cds.
ACCESSION PP267282
VERSION PP267282.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7488)
AUTHORS Tao,L., Wang,X. and Ding,J.
TITLE Direct Submission
JOURNAL Submitted (04-FEB-2024) Department of Microbiology Laboratary,
Nanjing Municipal Center for Disease Control and Prevention
affiliated to Nanjing Medical University, Zizhulin No. 2, Nanjing,
Jiangsu 210003, China
COMMENT ##Assembly-Data-START##
Assembly Method :: BWA v. 0.7.17-r1188
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7488
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="22040110"
/isolation_source="stool sample"
/host="Homo sapiens"
/db_xref="taxon:122929"
/country="China"
/collection_date="01-Apr-2022"
/note="genotype: GII.17[P17]"
gene <1..5098
/gene="ORF1"
CDS <1..5098
/gene="ORF1"
/codon_start=2
/product="nonstructural polyprotein"
/protein_id="WVN22334.1"
/translation="SNDASAAVAGKNNNNDKEKSSSDSLFANMSVTFKKALGARSKQP
PPGETKQIQKPPRPPTPELVKKIPPPPPNGEDEPGIVYKVGEGVSGLPDLTTVAQPDA
QNTAYSVPPLSQREVGEAKEPLPGSILEMWDGEIYHYGLYVERGHVLGVHKPPAAISL
AKIEITPLSLYWRVVYTPQYLIDPGTLKNLSGETFPYTAFDNNCYAFCCWVLDLNDSW
LSRRMIQRTTGFFKPYQDWNRKPLPTMDEPKIKKAANAVLCALSSLFTRPIKDIIGKL
RPLNILNILATCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYEMQGPEDL
AVELVPVVMGGIGLVLGFTKEKIGKMLSSAATTLRACKDLGSYGLEILKLVMKWFFPK
KEEANELAMVRAIEDAVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARKLSTK
SASPDIVGTINALLARIAAARSLVHKAKEELSSRQRPVVVMISGRPGIGKTHLARELA
KKVASTLSGDQRIGLVPRNGVDHWDAYKGERVVLWDDYGMSNPIQDALRLQELADTCP
LTLNCDRIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYADAPDIEKA
KRDFPGQPDMWKDHFRPDFSHIKLQLAPQGGFDKNGNTPHGKGVVKSLTIGSLIARAS
GLLHERMDEFELQGSDLPTFNFDRNKVAAFRQLAAENKYGLMDTLRVGNQLKSVKTLD
ELKQAIKNISIKKCQIVYNGCTYAMESDGRGKVVVEKVQNATVQTNNELVGALHHLRS
ARIRYYVKCFQEAIYSLLQIAGAAFVTSRIVRRMNISNLWSKPPIEEGDEPEDRGGCP
KPRDEDDLTIDSRDIKVEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERNGK
YSIEEYLQDRDRYYEELAIAKATEEDFCEEEEIKIRQRIFRPTRKQRKEERATLGLVT
GSEIRKRNPDDFKPKGKLWADDNRSVDYNERIDFEAPPSVWSRIVNFGTGWGFWVSPS
LFITSTHVIPKGITEAFGVPINQIQIHKSGEFCRLRFPKPIRPDVSGMILEEGAPEGT
VVSILIKRTTGELMPLAVRMGTHATMKIQGRTVGGQMGMLLTGSNAKGMDLGTTPGDC
GCPYIYKRGNDLVVIGVHTAAARGGNTVICATQGSEGEATLEGDDNKGTYCGAPILGP
GNAPKLSTKTKFWRSSNAPLPPGTYEPAYLGGRDPRVKGGPSLQQVMRDQLKPFTEPR
GKPPNPNVLESAKKTIINVLEQTIDPPQKWSYAQACASLDKTTSSGYPHHVRKNDYWS
GESFTGKLADQASKANLMYEEGKHMQPVYTAALKDELVKTDKIYGKIKKRLLWGSDLS
TMIRCARAFGGLMDEFKANCITLPIRVGMSMNEDGPIIFEKHSRYRYHYDADYSRWDS
TQQRAVLEAALEIMVRFSAEPQLAQIVAEDLLSPSVVDVGDFKIAINEGLPSGVPCTS
QWNSIAHWLLTLCALSEVTGLGPDIIQANSMYSFYGDDEIVSTDIKLDPEKLTAKLKE
YGLKPTRPDKTEGPLVISEDLNGLTFLRRTVTRDPAGWFGKLDQNSILRQLYWTRGPN
HEDPSETMIPHAQRPVQLMALLGESSLHGPSFYSKVSKLVISELKEGGMDFYVPRQES
MFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
mat_peptide <1..988
/gene="ORF1"
/product="p48"
mat_peptide 989..2086
/gene="ORF1"
/product="NTPase"
mat_peptide 2087..2623
/gene="ORF1"
/product="p22"
mat_peptide 2624..3022
/gene="ORF1"
/product="VPg"
mat_peptide 3023..3565
/gene="ORF1"
/product="Pro"
mat_peptide 3566..5095
/gene="ORF1"
/product="RdRp"
gene 5079..6701
/gene="ORF2"
CDS 5079..6701
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="WVN22335.1"
/translation="MKMASNDAAPSNDGAAGLVPEGNNETLPLEPVAGAAIAAPVTGQ
NNIIDPWIRTNFVQAPNGEFTVSPRNSPGEILLNLELGPDLNPYLAHLSRMYNGYAGG
VEVQVLLAGNAFTAGKILFAAVPPNFPVEFLSPAQITMLPHLIVDVRTLEPIMIPLPD
VRNTFFHYSNQPNSRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPTPDFEFTYLVPP
SVESKTKPFSLPILTLSELTNSRFPVPIDSLFTAQNNVLQVQCQNGRCTLDGELQGTT
QLLPTGICAFRGRVTAQINQRDRWHMQLQNLNGTTYDPTDDVPAPLGTPDFKGVVFGM
VSQRNVGNDAPGSTRAQQAWISTYSPQFVPKLGSVNLRISNNDDFQFQPTKFTPVGVN
DDDDDHPFRQWELPNYSGELTLNMNLAPPVAPNFPGEQLLFFRSFVPCSGGYNQGIID
CLIPQEWIQHFYQESAPSQSDVALIRYVNPDTGRTLFEAKLHRSGYITVAHSGDYPLV
VPANGHFRFDSWVNQFYSLAPMGTGNGRRRAQ"
gene 6701..7480
/gene="ORF3"
CDS 6701..7480
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="WVN22336.1"
/translation="MAGAFIAGLAGDMLTSSVGSLVNAGANAINQKIDFENNKQLQSA
SFQHDKEMLQAQVRATKQLQSEMIALKQGVLAAGGFSPTDAARGSIGAPMTKVLDWSG
TRYWAPNSTKTTGYSGQFTSSPVHMPSPNAPQSKPAKPRSLAPSSSSSSIYSMYTQST
HLTSGSSSNASSASTKLTNLSSGSSQNRTAEWVNQQRSLSPFMSGALNISHVTPPSSR
ASSSGTVSTVPKEVLDSWTSAFNTHRQPLFAHLRVRGESRV"
ORIGIN
1 gtctaacgac gcttccgctg ccgttgctgg caaaaacaac aacaacgaca aggaaaaatc
61 ttcaagtgac agcttgtttg ctaatatgtc tgtcactttt aagaaagccc tcggggcgcg
121 gtctaaacaa ccgcccccgg gagaaacaaa acaaatacaa aaaccaccaa ggccaccgac
181 accggaattg gtgaagaaaa tacctccacc cccacccaat ggcgaggacg aaccagggat
241 agtgtataag gtgggagagg gtgtgtctgg gctgcccgac ctaacaactg tggcacaacc
301 tgacgcacaa aacacagctt atagtgttcc cccacttagc cagagagaag tcggcgaagc
361 taaagaaccg ctgcctggct ccattctgga aatgtgggat ggtgagatct accactatgg
421 gctgtatgtt gagcgggggc atgtgctcgg agtacacaaa ccacctgctg caataagcct
481 tgccaaaatt gaaataacac cgttgtctct ctactggaga gtggtctaca ctccccagta
541 tttgatagat ccaggaactc tcaagaactt gagtggagag actttcccat acacggcctt
601 tgataacaac tgttatgcct tctgttgttg ggtcctagac ctcaacgact cctggcttag
661 caggagaatg attcaaagaa caactggatt tttcaaacct tatcaggatt ggaacagaaa
721 acccttacca accatggatg aaccgaaaat caagaaggcc gcgaatgctg tcctatgcgc
781 tctctcctca ctcttcacta gacccatcaa ggacatcatt gggaagctta gaccactgaa
841 cattcttaat atactggcaa cctgcgattg gacttttgca ggcatagtgg aatccttgat
901 ccttcttgct gaactctttg gggtgttctg gacaccccca gatgtgtctg cgatgattgc
961 tcccttgctc ggtgactacg agatgcaagg ccccgaagac ctggccgtgg aacttgtgcc
1021 cgtggtgatg ggaggaatag gtttggtgtt aggattcacc aaagaaaaga tcggcaagat
1081 gctttcgtca gctgcgacca cacttagggc ctgcaaggat ctaggatctt atggattgga
1141 gatacttaaa ttggtcatga agtggttctt ccccaagaag gaggaggcta acgaactagc
1201 catggtaagg gccattgagg atgcagtcct ggatttggag gcaatagaaa acaatcatat
1261 gaccaccctt ctcaaggata aagacagcct ggccacatac atgaggactc ttgacttgga
1321 agaagagaaa gcaaggaaac tgtcaaccaa atcggcgtca cctgacatcg tgggtacaat
1381 aaacgcattg ttggctagga tagcagccgc caggtcactg gtccacaagg ctaaggagga
1441 gctctcgagc agacagagac ctgttgttgt aatgatatca ggtagaccag gtataggaaa
1501 gacccatctg gccagagagc tagccaagaa agttgcgtca acactgtcag gcgaccaaag
1561 gattggactg gtgcctagga atggcgtcga ccattgggac gcctacaagg gagaaagggt
1621 ggtcctgtgg gatgattatg gtatgagcaa ccctatacaa gacgcactga ggctccaaga
1681 attggctgac acctgtcctc tgaccctaaa ttgtgatagg attgaaaata aaggaaaagt
1741 gttcgacagt gatgccataa ttataacaac caaccttgca aacccagcac cactagacta
1801 tgtcaacttt gaggcctgct ctagacgcat agacttcttg gtgtatgcag acgcacctga
1861 cattgagaag gctaagcgtg atttccctgg ccaaccagat atgtggaaag atcattttag
1921 accagacttc tcacacatta aacttcagct ggcaccacag ggaggttttg acaaaaatgg
1981 caacacccca catggcaaag gtgtggtaaa gtccctgacg attggttctc tgatcgccag
2041 ggcctccggc ttgctccacg agagaatgga tgaattcgag ctccaaggct ctgacctgcc
2101 aaccttcaat tttgaccgca acaaagtcgc cgccttcaga caattagcag ctgaaaacaa
2161 atatggtctt atggacacat tgagggtcgg caaccaactg aaaagtgtta agaccctgga
2221 tgagctgaag caggccataa agaacatcag tatcaagaag tgtcagatag tgtataatgg
2281 atgcacctat gccatggaat ctgatgggag gggcaaggtt gtggttgaga aggtacaaaa
2341 cgcaacagtt caaaccaaca atgaacttgt aggggcgctc caccacctga gatccgcaag
2401 gataagatac tatgttaaat gttttcaaga agccatttac tctctactcc aaattgctgg
2461 tgcagccttt gtcacctcac gcatcgtgag gcgcatgaac atatcaaacc tctggtcgaa
2521 gccacccatc gaggagggtg acgagcctga agacagagga ggatgcccca agcccaggga
2581 tgaagatgac ctcactattg actctagaga cattaaagtg gaagggaaga agggcaagaa
2641 caagtctggc cggggcaaga aacacacagc cttctcttcc aagggcctca gtgatgaaga
2701 gtacgatgag tacaagagaa tcagagagga gaggaatggc aaatactcaa tagaggaata
2761 cctccaagat agggacagat actatgaaga gcttgccatt gctaaggcca ctgaggagga
2821 cttctgtgag gaggaggaga ttaaaatacg ccagagaatc ttccgaccca ccaggaagca
2881 gcggaaagag gaaagggcca cgcttgggct tgtcacagga tcggaaatca gaaagaggaa
2941 tccagatgac tttaaaccaa agggaaaatt gtgggctgat gacaacagga gcgtggatta
3001 caatgagagg atagattttg aggctccccc gagtgtttgg tctaggatag tcaactttgg
3061 cacaggctgg ggattctggg tttctccaag tctctttata acttcaacac acgtcatacc
3121 aaaaggaatc actgaggcct ttggagtgcc cataaaccaa atccaaattc acaaatctgg
3181 agaattttgc cgcttgcggt ttccaaagcc aattaggcca gacgtgagtg ggatgatctt
3241 ggaagagggc gcccctgaag gcactgttgt gtctattctc atcaaaagga caacagggga
3301 gctgatgcct cttgcagtca gaatggggac tcatgccaca atgaaaatcc aaggtagaac
3361 ggtgggtggt cagatgggta tgcttctcac tggctcaaat gctaaaggca tggatctagg
3421 cacaacgcca ggtgactgcg gatgtccata catatacaaa aggggcaatg accttgtggt
3481 cattggggtg cacactgcag cagctcgtgg aggcaacacg gtcatatgtg ccacacaggg
3541 aagtgagggt gaagccactc ttgaaggaga tgacaacaag ggtacctatt gtggagcccc
3601 cattttggga cctggcaatg caccaaaatt gagcacaaag acaaaattct ggagatcctc
3661 taacgcaccg cttcccccag gtacttatga accagcatac cttggtggga gagacccgcg
3721 cgtgaaggga ggcccatctc tgcagcaagt tatgagagat caactcaaac cttttacaga
3781 gcccagaggg aagccaccaa acccaaatgt cttagagtca gcaaagaaga ctatcatcaa
3841 tgttctggaa caaaccattg acccccctca aaagtggtca tatgcccaag cttgtgcatc
3901 cctcgacaag acaacctcca gtggataccc gcaccacgtc cggaagaatg actactggag
3961 tggtgaatcc ttcacaggaa aacttgcaga tcaggcttca aaagcaaatc tcatgtatga
4021 ggaaggcaag cacatgcaac cagtttacac cgcagcactc aaagacgagc tcgtgaaaac
4081 tgacaaaatc tatggcaaaa tcaagaaaag actcctgtgg ggctccgacc tctccacaat
4141 gattcgatgc gccagagcat ttggtggtct catggatgaa ttcaaagcaa attgtattac
4201 actccctatc agagttggta tgagtatgaa tgaagatggt cccataatat ttgagaaaca
4261 ctccaggtac aggtaccact atgatgctga ttactcccgc tgggactcca cacaacagcg
4321 ggcagtgctg gaagcggcac ttgaaatcat ggtgagattt tctgctgagc cacagctggc
4381 acaaatagtg gcagaggacc tgctgtcacc aagtgtggtt gatgtgggcg atttcaaaat
4441 cgctatcaat gaaggcttac catctggcgt gccttgcacc tcacaatgga attctattgc
4501 ccactggtta cttaccttgt gtgccctttc tgaagtgaca ggattaggtc ctgacatcat
4561 acaagctaac tccatgtact ctttctatgg tgatgatgag attgtgagca cagacataaa
4621 attggaccca gagaaattga ccgcaaagct caaagaatat ggccttaaac ccactcggcc
4681 cgacaaaact gaggggccgt tggtgattag tgaggacctg aatgggttga ctttcctccg
4741 ccgaacagtc acccgcgatc cagcaggttg gtttggaaag ttggaccaaa actccatcct
4801 caggcagttg tactggacaa gaggacccaa ccatgaagac cccagtgaga ccatgatacc
4861 acacgcacaa agacctgtgc agctcatggc actactagga gagtcctccc tacatggacc
4921 ctcattttac agcaaggtta gcaaattagt aatatctgaa cttaaagagg gaggaatgga
4981 tttttatgtg cccagacaag agtcaatgtt cagatggatg aggttctcag atctaagcac
5041 atgggagggc gatcgcaatc tggctcccag ttttgtgaat gaagatggcg tcgaatgacg
5101 ccgctccatc taatgatggt gctgctggtc tcgtaccaga gggcaataac gagacccttc
5161 ccctagaacc agttgcgggc gcagctatag ccgcacccgt cactggccaa aataatataa
5221 ttgacccctg gattagaaca aattttgtgc aagcaccaaa tggagagttc acagtgtcac
5281 ccagaaactc tcctggagaa attttattaa atttagagtt gggccctgat ttgaaccctt
5341 atttggctca tttgtcaagg atgtacaatg ggtatgctgg tggagtggaa gttcaggttc
5401 tcctggcagg gaacgcgttc actgccggaa agatcctctt cgccgccgtc ccgccaaatt
5461 tcccagtgga attcttaagc ccagcccaga tcacaatgct cccacattta atagtagatg
5521 ttaggactct tgaaccaatt atgatcccac tccctgacgt taggaataca ttcttccatt
5581 atagtaacca gcctaacagc cgcatgagat tagtggctat gctctatacc ccactcagat
5641 ctaatggctc aggtgatgat gtctttactg tctcttgcag ggttttgact aggcctactc
5701 ctgattttga gttcacttat ttagtgccac cttctgttga atccaaaact aagccttttt
5761 ccttacctat tttaaccctt tctgagctca caaattcgag gtttccagtc cccatcgatt
5821 cgctttttac cgcccagaat aatgtgttgc aggtgcagtg tcaaaatggc aggtgtacac
5881 ttgatggcga gttacaaggc acaacccagt tgctcccaac tggcatctgc gcattcagag
5941 gacgggtgac agcacaaatt aaccaacgtg acaggtggca catgcaactg caaaacctca
6001 atggtacaac atatgaccca actgatgatg tgccagcccc gctgggtaca cctgacttca
6061 agggcgtcgt gtttgggatg gtaagccaaa gaaatgtggg taatgatgcg cctggctcaa
6121 ccagagccca acaggcgtgg atttcaacct atagccccca atttgtcccc aaattaggtt
6181 ctgtcaatct cagaattagt aataatgatg atttccaatt ccagccgaca aaattcacac
6241 cagtgggcgt caatgatgac gatgatgacc acccgttcag acagtgggaa ctaccaaact
6301 attcagggga gcttaccttg aatatgaatc ttgccccccc agttgctcca aattttcctg
6361 gtgaacaatt gttattcttc agatctttcg tgccatgctc aggaggttac aaccaaggta
6421 ttatagattg tcttattccc caagaatgga tccaacattt ctatcaggaa tcagcaccct
6481 cccagtcaga cgtggcccta atcaggtatg tcaaccccga tacgggacgt acactgtttg
6541 aagcaaaatt gcacagatct ggttacatta ctgtggctca ctctggagac tatcctcttg
6601 ttgttccggc taatggacac tttagatttg attcttgggt aaatcagttt tactcactcg
6661 ccccaatggg aactgggaat gggcgaagga gggctcagta atggctgggg ctttcattgc
6721 aggattggca ggcgacatgc tcacgtcatc tgtgggctcc cttgtgaacg caggggcaaa
6781 cgccatcaac caaaagatag actttgaaaa taacaaacaa ctccagtctg cttcctttca
6841 gcatgataaa gagatgctcc aagcgcaggt gagggcaacc aagcagctgc aatctgaaat
6901 gatagcccta aaacaggggg ttttggccgc aggcggcttt tcccccactg atgcagcacg
6961 gggatccatt ggtgcaccca tgacaaaggt gcttgactgg tctggcactc gatactgggc
7021 gcccaattcc acaaagacaa ctggctattc gggacaattc acctcttcac ctgtgcatat
7081 gcctagccca aatgctccac aatcaaaacc tgcaaagcct aggtctctag ctccttcctc
7141 ttcttctagt agtatctaca gtatgtacac tcagtctact catttgacat ctggctcttc
7201 tagtaatgct tcttctgcct ccacaaaatt gacaaattta agctctggct cctctcaaaa
7261 cagaacagca gagtgggtaa atcaacagag aagtcttagc cctttcatga gtggcgcact
7321 taacatctca catgtcacgc caccctcaag tagggcttcc agttctggga cggtctcgac
7381 cgtgcccaag gaagttttgg actcctggac gtctgcgttt aacacacaca gacagccgct
7441 cttcgcacac ctcagagtga ggggggagtc acgtgtttag tgaaaaga
//