Typing tool
|
Complete norovirus genomes
PP267280 | GII.17 | ||
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GII.P17 |
ORF1: 1..5101 ORF2: 5082..6704 ORF3: 6704..7483LOCUS PP267280 7491 bp RNA linear VRL 09-FEB-2024 DEFINITION Norovirus GII isolate 2204017 nonstructural polyprotein (ORF1) gene, partial cds; and VP1 (ORF2) and VP2 (ORF3) genes, complete cds. ACCESSION PP267280 VERSION PP267280.1 KEYWORDS . SOURCE Norovirus GII ORGANISM Norovirus GII Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 7491) AUTHORS Tao,L., Wang,X. and Ding,J. TITLE Direct Submission JOURNAL Submitted (04-FEB-2024) Department of Microbiology Laboratary, Nanjing Municipal Center for Disease Control and Prevention affiliated to Nanjing Medical University, Zizhulin No. 2, Nanjing, Jiangsu 210003, China COMMENT ##Assembly-Data-START## Assembly Method :: BWA v. 0.7.17-r1188 Sequencing Technology :: Illumina ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..7491 /organism="Norovirus GII" /mol_type="genomic RNA" /isolate="2204017" /isolation_source="stool sample" /host="Homo sapiens" /db_xref="taxon:122929" /country="China" /collection_date="01-Apr-2022" /note="genotype: GII.17[P17]" gene <1..5101 /gene="ORF1" CDS <1..5101 /gene="ORF1" /codon_start=2 /product="nonstructural polyprotein" /protein_id="WVN22328.1" /translation="ASNDASAAVAGKNNNNDKEKSSSDSLFANMSVTFKKALGARSKQ PPPGETKQIQKPPRPPTPELVKKIPPPPPNGEDEPGIVYKVGEGVSGLPDLTTVAQPD AQNTAYSVPPLSQREVGEAKEPLPGSILEMWDGEIYHYGLYVERGHVLGVHKPPAAIS LAKIEITPLSLYWRVVYTPQYLIDPGTLKNLSGETFPYTAFDNNCYAFCCWVLDLNDS WLSRRMIQRTTGFFKPYQDWNRKPLPTMDEPKIKKAANAVLCALSSLFTRPIKDIIGK LRPLNILNILATCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYEMQGPED LAVELVPVVMGGIGLVLGFTKEKIGKMLSSAATTLRACKDLGSYGLEILKLVMKWFFP KKEEANELAMVRAIEDAVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARKLST KSASPDIVGTINALLARIAAARSLVHKAKEELSSRQRPVVVMISGRPGIGKTHLAREL AKKVASTLSGDQRIGLVPRNGVDHWDAYKGERVVLWDDYGMSNPIQDALRLQELADTC PLTLNCDRIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYADAPDIEK AKRDFPGQPDMWKDHFRPDFSHIKLQLAPQGGFDKNGNTPHGKGVVKSLTIGSLIARA SGLLHERMDEFELQGSDLPTFNFDRNKVAAFRQLAAENKYGLMDTLRVGNQLKSVKTL DELKQAIKNISIKKCQIVYNGCTYAMESDGRGKVVVEKVQNATVQTNNELVGALHHLR SARIRYYVKCFQEAIYSLLQIAGAAFVTSRIVRRMNISNLWSKPPIEEGDEPEDRGGC PKPRDEDDLTIDSRDIKVEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERNG KYSIEEYLQDRDRYYEELAIAKATEEDFCEEEEIKIRQRIFRPTRKQRKEERATLGLV TGSEIRKRNPDDFKPKGKLWADDNRSVDYNERIDFEAPPSVWSRIVNFGTGWGFWVSP SLFITSTHVIPKGITEAFGVPINQIQIHKSGEFCRLRFPKPIRPDVSGMILEEGAPEG TVVSILIKRTTGELMPLAVRMGTHATMKIQGRTVGGQMGMLLTGSNAKGMDLGTTPGD CGCPYIYKRGNDLVVIGVHTAAARGGNTVICATQGSEGEATLEGDDNKGTYCGAPILG PGNAPKLSTKTKFWRSSNAPLPPGTYEPAYLGGRDPRVKGGPSLQQVMRDQLKPFTEP RGKPPNPNVLESAKKTIINVLEQTIDPPQKWSYAQACASLDKTTSSGYPHHVRKNDYW SGESFTGKLADQASKANLMYEEGKHMQPVYTAALKDELVKTDKIYGKIKKRLLWGSDL STMIRCARAFGGLMDEFKANCITLPIRVGMSMNEDGPIIFEKHSRYRYHYDADYSRWD STQQRAVLEAALEIMVRFSAEPQLAQIVAEDLLSPSVVDVGDFKIAINEGLPSGVPCT SQWNSIAHWLLTLCALSEVTGLGPDIIQANSMYSFYGDDEIVSTDIKLDPEKLTAKLK EYGLKPTRPDKTEGPLVISEDLNGLTFLRRTVTRDPAGWFGKLDQNSILRQLYWTRGP NHEDPSETMIPHAQRPVQLMALLGESSLHGPSFYSKVSKLVISELKEGGMDFYVPRQE SMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE" mat_peptide <1..991 /gene="ORF1" /product="p48" mat_peptide 992..2089 /gene="ORF1" /product="NTPase" mat_peptide 2090..2626 /gene="ORF1" /product="p22" mat_peptide 2627..3025 /gene="ORF1" /product="VPg" mat_peptide 3026..3568 /gene="ORF1" /product="Pro" mat_peptide 3569..5098 /gene="ORF1" /product="RdRp" gene 5082..6704 /gene="ORF2" CDS 5082..6704 /gene="ORF2" /note="major capsid protein" /codon_start=1 /product="VP1" /protein_id="WVN22329.1" /translation="MKMASNDAAPSNDGAAGLVPEGNNETLPLEPVAGAAIAAPVTGQ NNIIDPWIRTNFVQAPNGEFTVSPRNSPGEILLNLELGPDLNPYLAHLSRMYNGYAGG VEVQVLLAGNAFTAGKILFAAVPPNFPVEFLSPAQITMLPHLIVDVRTLEPIMIPLPD VRNTFFHYSNQPNSRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPTPDFEFTYLVPP SVESKTKPFSLPILTLSELTNSRFPVPIDSLFTAQNNVLQVQCQNGRCTLDGELQGTT QLLPTGICAFRGRVTAQINQRDRWHMQLQNLNGTTYDPTDDVPAPLGTPDFKGVVFGM VSQRNVGNDAPGSTRAQQAWISTYSPQFVPKLGSVNLRISNNDDFQFQPTKFTPVGVN DDDDDHPFRQWELPNYSGELTLNMNLAPPVAPNFPGEQLLFFRSFVPCSGGYNQGIID CLIPQEWIQHFYQESAPSQSDVALIRYVNPDTGRTLFEAKLHRSGYITVAHSGDYPLV VPANGHFRFDSWVNQFYSLAPMGTGNGRRRAQ" gene 6704..7483 /gene="ORF3" CDS 6704..7483 /gene="ORF3" /note="minor structural protein; small basic protein" /codon_start=1 /product="VP2" /protein_id="WVN22330.1" /translation="MAGAFIAGLAGDMLTSSVGSLVNAGANAINQKIDFENNKQLQSA SFQHDKEMLQAQVRATKQLQSEMIALKQGVLAAGGFSPTDAARGSIGAPMTKVLDWSG TRYWAPNSTKTTGYSGQFTSSPVHMPSPNAPQSKPAKPRSLAPSSSSSSIYSMHTQST HLTSGSSSNASSASTKLTNLSSGSSQNRTAEWVNQQRSLSPFMSGALNISHVTPPSSR ASSSGTVSTVPKEVLDSWTSAFNTHRQPLFAHLRVRGESRV" ORIGIN 1 ggcgtctaac gacgcttccg ctgccgttgc tggcaaaaac aacaacaacg acaaggaaaa 61 atcttcaagt gacagcttgt ttgctaatat gtctgtcact tttaagaaag ccctcggggc 121 gcggtctaaa caaccgcccc cgggagaaac aaaacaaata caaaaaccac caaggccacc 181 gacaccggaa ttggtgaaga aaatacctcc acccccaccc aatggcgagg acgaaccagg 241 gatagtgtat aaggtgggag agggtgtgtc tgggctgccc gacctaacaa ctgtggcaca 301 acctgacgca caaaacacag cttatagtgt tcccccactt agccagagag aagtcggcga 361 agctaaagaa ccgctgcctg gctccattct ggaaatgtgg gatggtgaga tctaccacta 421 tgggctgtat gttgagcggg ggcatgtgct cggagtacac aaaccacctg ctgcaataag 481 ccttgccaaa attgaaataa caccgttgtc tctctactgg agagtggtct acactcccca 541 gtatttgata gatccaggaa ctctcaagaa cttgagtgga gagactttcc catacacggc 601 ctttgataac aactgttatg ccttctgttg ttgggtccta gacctcaacg actcctggct 661 tagcaggaga atgattcaaa gaacaactgg atttttcaaa ccttatcagg attggaacag 721 aaaaccctta ccaaccatgg atgaaccgaa aatcaagaag gccgcgaatg ctgtcctatg 781 cgctctctcc tcactcttca ctagacccat caaggacatc attgggaagc ttagaccact 841 gaacattctt aatatactgg caacctgcga ttggactttt gcaggcatag tggaatcctt 901 gatccttctt gctgaactct ttggggtgtt ctggacaccc ccagatgtgt ctgcgatgat 961 tgctcccttg ctcggtgact acgagatgca gggccccgaa gacctggccg tggaacttgt 1021 gcccgtggtg atgggaggaa taggtttggt gttaggattc accaaagaaa agatcggcaa 1081 gatgctttcg tcagctgcga ccacacttag ggcctgcaag gatctaggat cttatggatt 1141 ggagatactt aaattggtca tgaagtggtt cttccccaag aaggaggagg ctaacgaact 1201 agccatggta agggccattg aggatgcagt cctggatttg gaggcaatag aaaacaatca 1261 tatgaccacc cttctcaagg ataaagacag cctggccaca tacatgagga ctcttgactt 1321 ggaagaagag aaagcaagga aactgtcaac caaatcggcg tcacctgaca tcgtgggtac 1381 aataaacgca ttgttggcta ggatagcagc cgccaggtca ctggtccaca aggctaagga 1441 ggagctctcg agcagacaga gacctgttgt tgtaatgata tcaggtagac caggtatagg 1501 aaagacccat ctggccagag agctagccaa gaaagttgcg tcaacactgt caggcgacca 1561 aaggattgga ctggtgccta ggaatggcgt cgaccattgg gacgcctaca agggagaaag 1621 ggtggtcctg tgggatgatt atggtatgag caaccctata caagacgcac tgaggctcca 1681 agaattggct gacacctgtc ctctgaccct aaattgtgat aggattgaaa ataaaggaaa 1741 agtgttcgac agtgatgcca taattataac aaccaacctt gcaaacccag caccactaga 1801 ctatgtcaac tttgaggcct gctctagacg catagacttc ttggtgtatg cagacgcacc 1861 tgacattgag aaggctaagc gtgatttccc tggccaacca gatatgtgga aagatcattt 1921 tagaccagac ttctcacaca ttaaacttca gctggcacca cagggaggtt ttgacaaaaa 1981 tggcaacacc ccacatggca aaggtgtggt aaagtccctg acgattggtt ctctgatcgc 2041 cagggcctcc ggcttgctcc acgagagaat ggatgaattc gagctccaag gctctgacct 2101 gccaaccttc aattttgacc gcaacaaagt cgccgccttc agacaattag cagctgaaaa 2161 caaatatggt cttatggaca cattgagggt cggcaaccaa ctgaaaagtg ttaagaccct 2221 ggatgagctg aagcaggcca taaaaaacat cagtatcaag aagtgtcaga tagtgtataa 2281 tggatgcacc tatgccatgg aatctgatgg gaggggcaag gttgtggttg agaaggtaca 2341 aaacgcaaca gttcaaacca acaatgaact tgtaggggcg ctccaccacc tgagatccgc 2401 aaggataaga tactatgtta aatgttttca agaagccatt tactctctac tccaaattgc 2461 tggtgcagcc tttgtcacct cacgcatcgt gaggcgcatg aacatatcaa acctctggtc 2521 gaagccaccc atcgaggagg gtgacgagcc tgaagacaga ggaggatgcc ccaagcccag 2581 ggatgaagat gacctcacta ttgactctag agacattaaa gtggaaggga agaagggcaa 2641 gaacaagtct ggccggggca agaaacacac agccttctct tccaagggcc tcagtgatga 2701 agagtacgat gagtacaaga gaatcagaga ggagaggaat ggcaaatact caatagagga 2761 atacctccaa gatagggaca gatactatga agagcttgcc attgctaagg ccactgagga 2821 ggacttctgt gaggaggagg agattaaaat acgccagaga atcttccgac ccaccaggaa 2881 gcagcggaaa gaggaaaggg ccacgcttgg gcttgtcaca ggatcggaaa tcagaaagag 2941 gaatccagat gactttaaac caaagggaaa attgtgggct gatgacaaca ggagcgtgga 3001 ttacaatgag aggatagatt ttgaggctcc cccgagtgtt tggtctagga tagtcaactt 3061 tggcacaggc tggggattct gggtttctcc aagtctcttt ataacttcaa cacacgtcat 3121 accaaaagga atcactgagg cctttggagt gcccataaac caaatccaaa ttcacaaatc 3181 tggagaattt tgccgcttgc ggtttccaaa gccaattagg ccagacgtga gtgggatgat 3241 cttggaagag ggcgcccctg aaggcactgt tgtgtctatt ctcatcaaaa ggacaacagg 3301 ggagctgatg cctcttgcag tcagaatggg gactcatgcc acaatgaaaa tccaaggtag 3361 aacggtgggt ggtcagatgg gtatgcttct cactggctca aatgctaaag gcatggatct 3421 aggcacaacg ccaggtgact gcggatgtcc atacatatac aaaaggggca atgaccttgt 3481 ggtcattggg gtgcacactg cagcagctcg tggaggcaac acggtcatat gtgccacaca 3541 gggaagtgag ggtgaagcca ctcttgaagg agatgacaac aagggtacct attgtggagc 3601 ccccattttg ggacctggca atgcaccaaa attgagcaca aagacaaaat tctggagatc 3661 ctctaacgca ccgcttcccc caggtactta tgaaccagca taccttggtg ggagagaccc 3721 gcgcgtgaag ggaggcccat ctctgcagca agttatgaga gatcaactca aaccttttac 3781 agagcccaga gggaagccac caaacccaaa tgtcttagag tcagcaaaga agactatcat 3841 caatgttctg gaacaaacca ttgacccccc tcaaaagtgg tcatatgccc aagcttgtgc 3901 atccctcgac aagacaacct ccagtggata cccgcaccac gtccggaaga atgactactg 3961 gagtggtgaa tccttcacag gaaaacttgc agatcaggct tcaaaagcaa atctcatgta 4021 tgaggaaggc aagcacatgc aaccagttta caccgcagca ctcaaagacg agctcgtgaa 4081 aactgacaaa atctatggca aaatcaagaa aagactcctg tggggctccg acctctccac 4141 aatgattcga tgcgccagag catttggtgg tctcatggat gaattcaaag caaattgtat 4201 tacactccct atcagagttg gtatgagtat gaatgaagat ggtcccataa tatttgagaa 4261 acactccagg tacaggtacc actatgatgc tgattactcc cgctgggact ccacacaaca 4321 gcgggcagtg ctggaagcgg cacttgaaat catggtgaga ttttctgctg agccacagct 4381 ggcacaaata gtggcagagg acctgctgtc accaagtgtg gttgatgtgg gcgatttcaa 4441 aatcgctatc aatgaaggct taccatctgg cgtgccttgc acctcacaat ggaattctat 4501 tgcccactgg ttacttacct tgtgtgccct ttctgaagtg acaggattag gtcctgacat 4561 catacaagct aactccatgt actctttcta tggtgatgat gagattgtga gcacagacat 4621 aaaattggac ccagagaaat tgaccgcaaa gctcaaagaa tatggcctta aacccactcg 4681 gcccgacaaa actgaggggc cgttggtgat tagtgaggac ctgaatgggt tgactttcct 4741 ccgccgaaca gtcacccgcg atccagcagg ttggtttgga aagttggacc aaaactccat 4801 cctcaggcag ttgtactgga caagaggacc caaccatgaa gaccccagtg agaccatgat 4861 accacacgca caaagacctg tgcagctcat ggcactacta ggagagtcct ccctacatgg 4921 accctcattt tacagcaagg ttagcaaatt agtaatatct gaacttaaag agggaggaat 4981 ggatttttat gtgcccagac aagagtcaat gttcagatgg atgaggttct cagatctaag 5041 cacatgggag ggcgatcgca atctggctcc cagttttgtg aatgaagatg gcgtcgaatg 5101 acgccgctcc atctaatgat ggtgctgctg gtctcgtacc agagggcaat aacgagaccc 5161 ttcccctaga accagttgcg ggcgcagcta tagccgcacc cgtcactggc caaaataata 5221 taattgaccc ctggattaga acaaattttg tgcaagcacc aaatggagag ttcacagtgt 5281 cacccagaaa ctctcctgga gaaattttat taaatttaga gttgggccct gatttgaacc 5341 cttatttggc tcatttgtca aggatgtaca atgggtatgc tggtggagtg gaagttcagg 5401 ttctcctggc agggaacgcg ttcactgccg gaaagatcct cttcgccgcc gtcccgccaa 5461 atttcccagt ggaattctta agcccagccc agatcacaat gctcccacat ttaatagtag 5521 atgttaggac tcttgaacca attatgatcc cactccctga cgttaggaat acattcttcc 5581 attatagtaa ccagcctaac agccgcatga gattagtggc tatgctctat accccactca 5641 gatctaatgg ctcaggtgat gatgtcttta ctgtctcttg cagggttttg actaggccta 5701 ctcctgattt tgagttcact tatttagtgc caccttctgt tgaatccaaa actaagcctt 5761 tttccttacc tattttaacc ctttctgagc tcacaaattc gaggtttcca gtccccatcg 5821 attcgctttt taccgcccag aataatgtgt tgcaggtgca gtgtcaaaat ggcaggtgta 5881 cacttgatgg cgagttacaa ggcacaaccc agttgctccc aactggcatc tgcgcattca 5941 gaggacgggt gacagcacaa attaaccaac gtgacaggtg gcacatgcaa ctgcaaaacc 6001 tcaatggtac aacatatgac ccaactgatg atgtgccagc cccgctgggt acacctgact 6061 tcaagggcgt cgtgtttggg atggtaagcc aaagaaatgt gggtaatgat gcgcctggct 6121 caaccagagc ccaacaggcg tggatttcaa cctatagccc ccaatttgtc cccaaattag 6181 gttctgtcaa tctcagaatt agtaataatg atgatttcca attccagccg acaaaattca 6241 caccagtggg cgtcaatgat gacgatgatg accacccgtt cagacagtgg gaactaccaa 6301 actattcagg ggagcttacc ttgaatatga atcttgcccc cccagttgct ccaaattttc 6361 ctggtgaaca attgttattc ttcagatctt tcgtgccatg ctcaggaggt tacaaccaag 6421 gtattataga ttgtcttatt ccccaagaat ggatccaaca tttctatcag gaatcagcac 6481 cctcccagtc agacgtggcc ctaatcaggt atgtcaaccc cgatacggga cgtacactgt 6541 ttgaagcaaa attgcacaga tctggttaca ttactgtggc tcactctgga gactatcctc 6601 ttgttgttcc ggctaatgga cactttagat ttgattcttg ggtaaatcag ttttactcac 6661 tcgccccaat gggaactggg aatgggcgaa ggagggctca gtaatggctg gggctttcat 6721 tgcaggattg gcaggcgaca tgctcacgtc atctgtgggc tcccttgtga acgcaggggc 6781 aaacgccatc aaccaaaaga tagactttga aaataacaaa caactccagt ctgcttcctt 6841 tcagcatgat aaagagatgc tccaagcgca ggtgagggca accaagcagc tgcaatctga 6901 aatgatagcc ctaaaacagg gggttttggc cgcaggcggc ttttccccca ctgatgcagc 6961 acggggatcc attggtgcac ccatgacaaa ggtgcttgac tggtctggca ctcgatactg 7021 ggcgcccaat tccacaaaga caactggcta ttcgggacaa ttcacctctt cacctgtgca 7081 tatgcctagc ccaaatgctc cacaatcaaa acctgcaaag cctaggtctc tagctccttc 7141 ctcttcttct agtagtatct acagtatgca cactcagtct actcatttga catctggctc 7201 ttctagtaat gcttcttctg cctccacaaa attgacaaat ttaagctctg gctcctctca 7261 aaacagaaca gcagagtggg taaatcaaca gagaagtctt agccctttca tgagtggcgc 7321 acttaacatc tcacatgtca cgccaccctc aagtagggct tccagttctg ggacggtctc 7381 gaccgtgccc aaggaagttt tggactcctg gacgtctgcg tttaacacac acagacagcc 7441 gctcttcgca cacctcagag tgagggggga gtcacgtgtt tagtgaaaag a //