Typing tool
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Typing tool
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Complete norovirus genomes
| PP267275 | GII.4 Sydney | |
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| GII.P16 |
ORF1: 1..5083
ORF2: 5064..6686
ORF3: 6686..7492
LOCUS PP267275 7552 bp RNA linear VRL 09-FEB-2024
DEFINITION Norovirus GII isolate 22021817 nonstructural polyprotein (ORF1)
gene, partial cds; and VP1 (ORF2) and VP2 (ORF3) genes, complete
cds.
ACCESSION PP267275
VERSION PP267275.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7552)
AUTHORS Tao,L., Wang,X. and Ding,J.
TITLE Direct Submission
JOURNAL Submitted (04-FEB-2024) Department of Microbiology Laboratary,
Nanjing Municipal Center for Disease Control and Prevention
affiliated to Nanjing Medical University, Zizhulin No. 2, Nanjing,
Jiangsu 210003, China
COMMENT ##Assembly-Data-START##
Assembly Method :: BWA v. 0.7.17-r1188
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7552
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="22021817"
/isolation_source="stool sample"
/host="Homo sapiens"
/db_xref="taxon:122929"
/country="China"
/collection_date="18-Feb-2022"
/note="genotype: GII.4[P16]"
gene <1..5083
/gene="ORF1"
CDS <1..5083
/gene="ORF1"
/codon_start=2
/product="nonstructural polyprotein"
/protein_id="WVN22313.1"
/translation="DATVAVACNNNNDKEKSSGEGLFTNMSSTLKKALGARPKQPAPR
DEPQKPPRPPTPELVKKIPPPPPNGEKEEEPVIRYEVKSGISGLPELTTVPQPDVANT
AFSVPPLSLRENREAKEPLTGAILEMWDGEIYHYGLYVEKGLVLGVHKPPAAISMARV
ELTPLSLYWRVVYTPQYLISPETLRRLNGEAFPYTAFDNNCYAFCCWVLDLNDSWLSR
RMVQRTTGFFRPYQEWNRKPLPTMDDSKIKKVANIFLCSLSTLFTRPIKDLIGKIKPL
NILNILATCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPEDLAVE
LVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFPKKEE
ANELAMVRAIEDAVLDLEAIENNHMTTLLKDKDSLATYMKTLDMEEEKARRLSTKSAS
PDIVGTINALLARIAAARSLVHRAKEELSSRIRPVVVMISGKPGIGKTHLAREVARKV
ASTLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRIQELADTCPLTL
NCDRIENKGKVFDSEVIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEKAKRD
FPGQPDMWKDAFKPDFSHIKLQLAPQGGFDKNGNTPHGKGVMKTLTTGSLIARASGLL
HERMDEFELQGPTITTFNFDRNRITAFRQLAAENKYGLVDTMKVGNQLKGVKTMEELK
QAIRNVTIKRCQIIYGGSTYDLESDGKGKVLVEKVKNTSIQTNNELAGALHHLKHARI
RYYVKCVQETVYSIIQIAGAAFVTTRIARRMNIQELWSKPQLDQNESETKEEAPKSED
DEFVISSKDIKEEGKKGKNKTGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKYSIEE
YLQDRDRYYEELAIAKATEEDFCEEEEIKIRQRIFRPTRKQRKEERATLGLVTGSEIR
RRNPDDFKPKGKLWADDNRSVDYNEKLDFEAPPSIWSRIVSFGSGWGFWVSPSLFITS
THVIPAGMTEAFGVPIKQIQIHKSGEFCRFRFPKPIRPDVAGMILEEGAPEGTVATVL
IKRPTGELMPLAARMGTHATMKIQGRMVGGQMGMLLTGSNAKGMDLGTTPGDCGCPYI
YKRGNDYIVIGVHTAAARGGNTIICATQGSEGEAILEGGDDKGTYCGAPILGPGGAPK
LSTKTKFWRSSNTPLPPGTYEPAYLGGRDPRVRGGPSLQQVMRDQLKPFTEPRGKPPR
PSVLEAAKQTIINVLEQTLDPPQKWTYAQACASLDKTTSSGHPHHARKNEFWNGETFT
GKLADQASKANLMFEEGKHMTPVYTAALKDELVKTEKIYGKIKKRLLWGSDLSTMIRC
ARSFGGLMDEMKAHCISLPVRVGMNMNEDGPIIFEKHSRYKYHYDADYSRWDSTQQRA
VLAAALEIMVRFSAEPQLAQIVAEDLLAPSVVDVGDFKITINEGLPSGVPCTSQWNSI
THWLLTLCALSEVTKLSPDIIQANSMFSFYGDDEIVSTDIKLDPEQLTAKLKEYGLKP
TRPDKTEGPLIISEDLNGLTFLRRTVTRDPAGWFGKLDQSSILRQMYWTRGPNHEDPN
ETMIPHSQRPIQLMALLGEASLHGPSFYSRISKLVITELKEGGMDFYVPRQEPMFRWM
RFSDLSTWEGDRNLAPNFVNEDGVE"
mat_peptide <1..979
/gene="ORF1"
/product="p48"
mat_peptide 980..2077
/gene="ORF1"
/product="NTPase"
mat_peptide 2078..2608
/gene="ORF1"
/product="p22"
mat_peptide 2609..3007
/gene="ORF1"
/product="VPg"
mat_peptide 3008..3550
/gene="ORF1"
/product="Pro"
mat_peptide 3551..5080
/gene="ORF1"
/product="RdRp"
gene 5064..6686
/gene="ORF2"
CDS 5064..6686
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="WVN22314.1"
/translation="MKMASSDANPSDGSAANLVPEVNNEVMALEPVVGAAIAAPVAGQ
QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG
FEVQVILAGNAFTAGKIIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD
VRNNFYHYNQSNDSTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP
TVESRTKPFSVPILTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT
QLSPVNICTFRGDVTHITGSHNYTMNLASQNWNNYDPTEEIPAPLGTPDFVGKIQGML
TQTTRTDGSTRGHKATVYTGSADFAPKLGRVQFETDTNHDFEANQNTKFTPVGVIQDG
STTHRNEPQQWVLPSYSGRNTHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD
CLLPQEWVQYFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV
IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAV"
gene 6686..7492
/gene="ORF3"
CDS 6686..7492
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="WVN22315.1"
/translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA
SFQFSSNLQQASFQHDKEMLQAQIEATKKLQQEMMRVKQAMLLEGGFSETDAARGAIN
APMTKALDWSGTRYWAPDARITTYNSGHFSTPQPSGALPVRANLRDAVPARGPSTKSS
NSSAATSVYSNQTTSTRLGSTAGSGTSVSSLPSTARTRSWVEDQNRNLSPFMRGAHNI
SFVTPPSSRSSSQGTVSTVPKEILDSWTGAFNTRRQPLFAHIRKRGESRV"
ORIGIN
1 cgacgctacc gttgccgttg cttgcaacaa caacaacgac aaggaaaaat cttcaggtga
61 aggcttattc acaaatatgt cttctacctt aaagaaagcc ctcggggcta ggcccaaaca
121 gcctgccccg agagacgaac cacaaaagcc cccaagacca ccaactcccg agttggtcaa
181 gaagataccc cctcctccac ctaatggcga aaaagaagaa gaaccagtca ttaggtatga
241 ggttaagagt gggatctctg gcctgcccga gctcacaaca gttccccaac cggacgtggc
301 caacacagca tttagtgttc caccactgag cttgagggaa aacagggagg ccaaggaacc
361 gctaacaggg gcaatactag agatgtggga tggagagata taccattatg gcctgtacgt
421 ggagaaaggc ttagtgttgg gtgtgcacaa accacctgca gccataagca tggcaagagt
481 ggagttgacg ccgctgtcat tgtactggcg tgtggtgtac actccccaat acctcatctc
541 ccctgaaact ctcaggaggc tcaacggaga ggcgttccct tacaccgctt tcgacaacaa
601 ctgctatgct ttttgctgct gggtgttaga cctcaatgac tcatggctta gcaggaggat
661 ggtgcaaaga acaacgggct tcttcaggcc ttaccaagag tggaatagaa aacccttgcc
721 cactatggat gactccaaaa taaagaaggt agcaaatata ttcctatgtt cattgtccac
781 attattcacc agacccataa aagacctcat aggaaaaatc aaaccactaa acatattgaa
841 catcttggca acgtgtgact ggacgtttgc cggaatagtg gagtctctga tattgcttgc
901 cgagctcttc ggagttttct ggacaccccc agatgtgtct gctatgatcg ctcccttact
961 cggggactac gagttacaag ggccagaaga cctcgccgtt gaactcgtac ctgtggtaat
1021 gggagggatt ggtttggtgt tgggattcac caaagagaaa atcggcaaaa tgttgtcctc
1081 agcagcatca acactcaggg cttgtaaaga tcttggtgcc tatggcttag agatactcaa
1141 attggtcatg aagtggttct tcccaaagaa agaggaggcc aatgagctag ccatggtgag
1201 agccatagag gatgccgtgc tagatcttga ggcaatagag aataaccaca tgacaaccct
1261 gttgaaagat aaagacagct tagcaacata catgaaaaca ctggacatgg aggaggagaa
1321 agccagaagg ttatccacaa aatctgcatc ccctgacata gttgggacaa tcaacgccct
1381 gctggctcga atagcagccg ccaggtcatt agtccacagg gccaaggaag agctgtctag
1441 caggataaga ccagtagttg ttatgatatc tggcaaacca ggaataggca aaactcatct
1501 ggccagggag gtggcaagaa aggtggcatc cactctcaca ggggaccaaa gagtcggact
1561 cataccaaga aacggtgtgg accattggga tgcatataaa ggtgagagag tcgtgctgtg
1621 ggacgactat ggcatgagta accccattca tgatgctctc cgcatacaag aattggctga
1681 tacgtgtccc cttaccttaa attgtgacag aattgaaaat aagggaaaag tttttgacag
1741 tgaagtcata ataattacaa caaaccttgc caacccagcc ccacttgatt atgtcaactt
1801 tgaggcctgt tccaggagaa ttgatttcct ggtgtacgct gaggcaccag aagtagaaaa
1861 ggcaaaacgg gattttcctg gtcagccaga tatgtggaag gacgccttca agccggactt
1921 ttcacacatc aagctacagc ttgcacctca gggcggcttt gacaagaatg gcaatacccc
1981 acatgggaaa ggagtgatga agaccctcac taccggttct ctgattgccc gtgcatcagg
2041 cctactgcat gagaggatgg atgaatttga actccaaggt cccacaatca ccactttcaa
2101 tttcgaccgg aatagaatca cagcattcag acaattggct gcagaaaaca agtatggact
2161 ggtggacacc atgaaagttg gcaatcaact aaaaggagtg aaaaccatgg aagaactcaa
2221 acaagcaatc agaaatgtga ccatcaagag gtgccagatc atctacggtg gttccacgta
2281 tgaccttgaa tctgatggca agggcaaagt tttggtggaa aaggtcaaga acacctctat
2341 acaaaccaac aatgagttgg ccggggccct gcaccatctt aaacatgccc gaatcaggta
2401 ctatgtcaaa tgtgtgcaag aaacagtcta ttccatcata caaattgccg gcgctgcgtt
2461 tgtcaccacg cgcattgcac gccgcatgaa catacaagaa ctctggtcga agccacaatt
2521 agatcaaaat gaatcagaga ctaaggaaga ggcccccaag tcagaagatg acgagtttgt
2581 catatcttct aaggatatca aggaggaagg gaagaagggc aaaaacaaaa ctggccgtgg
2641 caagaaacac actgcattct ccagcaaggg cttgagcgat gaggagtatg acgagtacaa
2701 gaggataaga gaagagagaa acgggaagta ctctatagag gaatatcttc aagacagaga
2761 caggtactat gaggagctcg ccattgccaa ggccacggaa gaagacttct gtgaagagga
2821 ggaaatcaaa atccgtcaga gaattttccg tcccaccagg aaacaaagaa aggaagagag
2881 ggccacatta gggctggtaa caggttcaga aatcagaaga agaaaccctg atgatttcaa
2941 acccaaaggg aagctgtggg ccgatgacaa cagaagtgtt gactacaatg agaaactgga
3001 ctttgaggcc cccccaagca tatggtctag aattgtgagc tttggttctg gctggggctt
3061 ctgggtatca ccaagcctgt tcataacatc aacccacgtt atccctgcag gcatgacaga
3121 agcatttgga gtccccatca aacaaattca gattcacaaa tcaggtgaat tttgccgatt
3181 cagattccca aaaccaatta gaccagatgt ggcaggaatg atcttggaag aaggtgcgcc
3241 tgagggcacc gtggcaactg tgctcatcaa acgccccacc ggagagctca tgcctcttgc
3301 agccagaatg ggaacacacg caaccatgaa gatccaaggc cgcatggttg gcggacagat
3361 gggtatgttg ctcactggat caaatgctaa gggaatggat ttgggaacaa ctcctggtga
3421 ctgtggctgc ccttacatct ataaaagggg taatgactat atagtcattg gggtacacac
3481 tgcagcagcc cgtggtggaa acaccatcat ctgtgccaca cagggaagtg agggtgaggc
3541 aattcttgag ggtggagatg acaaaggaac atactgtggg gcacctattc taggccctgg
3601 gggtgcacca aagttgagca ccaaaaccaa attttggagg tcatcgaaca cgccccttcc
3661 accagggaca tatgagcctg cctacctcgg tggccgtgac ccgcgtgtta ggggtgggcc
3721 ctccttgcag caggtaatga gagaccaatt gaagccattc actgaaccca ggggcaaacc
3781 tccaagacca agtgttttgg aagcagccaa acaaaccatt atcaatgtcc tcgaacaaac
3841 cctggatccc ccacaaaaat ggacatacgc acaggcgtgt gcctcacttg acaaaaccac
3901 ctccagcggg catccacacc acgcccgaaa gaatgagttc tggaatggtg agaccttcac
3961 tggtaaattg gcagaccaag catcaaaagc aaacctaatg tttgaggaag ggaaacacat
4021 gacaccagtg tatacagcag cactcaagga cgagctagtc aagactgaga aaatctatgg
4081 aaagatcaag aagaggctgc tctggggctc cgacttgtct accatgatcc ggtgcgctag
4141 gtcatttggt gggctcatgg acgagatgaa ggcacactgc atatcactcc cagtacgagt
4201 tggcatgaat atgaatgaag atggcccgat aatatttgag aaacactcca gatataaata
4261 tcactatgat gcagactact ctcgctggga ttcaacacaa cagagggcag tattagcagc
4321 agccttggaa atcatggtca gattctctgc agaaccacaa ttggcacaaa tagtcgctga
4381 ggatctactg gcccctagtg tagtagacgt aggagacttt aaaatcacaa taaatgaagg
4441 gctcccatct ggtgtgccat gtacttctca atggaactcc ataacacact ggctgctaac
4501 tctctgtgcc ttgtctgaag tcaccaaact gtcccctgat attatacaag caaattccat
4561 gttctcattt tacggtgatg acgagattgt cagcaccgac ataaaattgg accctgaaca
4621 gttgaccgcc aagttgaagg agtacggcct gaaaccaact cgtccagaca agaccgaggg
4681 acccctgatc atcagtgaag atttgaacgg gctcactttc ctccgaagga cggtgactcg
4741 tgacccagct ggctggtttg gaaaactgga ccaaagttca attttgaggc agatgtactg
4801 gactagagga ccaaatcatg aagaccccaa tgagacaatg ataccccatt ctcagagacc
4861 catacagctc atggcactgc ttggtgaagc ctctcttcac ggaccctctt tctacagtag
4921 aatcagtaaa ttggtcataa ctgaacttaa agaaggtggg atggactttt acgtgccaag
4981 gcaggaaccc atgttcaggt ggatgaggtt ttctgacttg agcacgtggg agggcgatcg
5041 caatctggct cccaattttg tgaatgaaga tggcgtcgag tgacgccaac ccatctgatg
5101 ggtccgcagc caacctcgta ccagaggtca acaatgaggt tatggctttg gagcccgttg
5161 ttggtgccgc tattgcggca cctgtggcgg gccaacaaaa tgtaattgac ccctggatta
5221 gaaacaattt tgtacaagcc cctggtgggg agttcacagt atcccctaga aatgctccag
5281 gtgaaatact atggagcgcg cccctaggcc ctgacctaaa tccctacctg tcccatttag
5341 ccagaatgta caatggttat gcaggtggtt ttgaagtgca ggtaattctc gcggggaacg
5401 cgttcaccgc cgggaagatt atatttgcag cagtcccacc aaattttcca actgaaggtt
5461 taagccctag ccaggtcact atgttccccc acataatagt agatgttaga caattggaac
5521 ctgtgctgat ccccttaccc gatgttagga ataatttcta tcattacaat cagtcaaatg
5581 attccactat taagttgata gcaatgttgt acacaccact tagggctaat aatgctgggg
5641 atgatgtttt cacagtttcg tgccgagttc tcacgagacc atcccccgat tttgatttca
5701 tatttttagt accacccaca gttgagtcaa gaactaaacc attctctgtc ccaattttaa
5761 ctgttgagga gatgaccaat tcaagattcc ccatcccttt ggaaaagtta tttacaggcc
5821 ccagcagtgc attcgtcgtt caaccacaaa acggcagatg cacaactgat ggcgtgcttt
5881 taggcaccac ccaactttct cctgtcaaca tctgcacctt cagaggggat gtcactcaca
5941 tcacaggtag tcacaactac actatgaatt tggcttctca aaattggaac aactatgatc
6001 caacagaaga aatcccagcc cctctaggga ctccagattt tgtggggaag attcaaggca
6061 tgctcaccca gaccacaagg acagatggtt caacacgcgg tcacaaagct acagtgtaca
6121 ctgggagcgc cgactttgct ccaaaactgg gtagagttca atttgaaact gacacaaacc
6181 atgattttga agccaatcaa aacacaaagt tcaccccagt cggtgtcatc caagatggta
6241 gcaccaccca tcgaaacgaa ccccagcagt gggtgctccc aagttactca ggcagaaata
6301 ctcacaatgt acatttggcc cccgctgtag cccccacctt tccgggtgag caacttctct
6361 tcttcagatc caccatgccc ggatgcagcg ggtaccctaa catggatttg gactgtctgc
6421 tccctcagga atgggtgcag tacttctacc aagaggcagc cccagcacaa tctgatgtgg
6481 ctctgctgag atttgtgaat ccagacacag gtagggtttt gtttgagtgc aagcttcaca
6541 aatcaggcta tgtcacagtg gctcacactg gccaacatga tttggttatc ccccccaatg
6601 gttactttag gtttgattct tgggtcaacc agttctacac gcttgccccc atgggaaatg
6661 gaacggggcg tagacgtgca gtataatggc tggagctttc tttgctggat tggcatctga
6721 tgtccttggc tctggacttg gttcccttat caatgctggg gctggggcca tcaaccaaaa
6781 ggttgagttt gaaaataaca ggaaattgca acaagcatcc tttcaattta gcagcaattt
6841 gcaacaggct tcctttcaac atgataaaga gatgctccaa gcacaaattg aggccaccaa
6901 aaagctacaa caggaaatga tgagagttaa gcaggcaatg ctcctagagg gtgggttctc
6961 tgagacagat gcagcccgcg gggcaattaa cgcccccatg acaaaggctt tggactggag
7021 cgggacaagg tactgggctc cagatgctag aattacaaca tacaattcag gccacttttc
7081 cacccctcaa ccatcggggg cactgccagt aagagccaat cttagggatg ctgtccctgc
7141 tcggggaccc tccaccaaat cttctaactc ttctgctgcc acttctgtgt actcaaatca
7201 aactacttca acgagacttg gttctacagc tggttctgga accagtgtct caagcctccc
7261 gtcgactgca aggactagga gctgggttga ggatcaaaat aggaatttgt cacctttcat
7321 gaggggggcc cacaacatat catttgtcac cccaccatct agcagatcct ctagccaagg
7381 cacagtctcg accgtgccta aagaaatttt ggactcctgg actggcgctt tcaacacgcg
7441 caggcagcct ctcttcgctc acattcgtaa gcgaggggag tcacgggtgt aatgtgaaaa
7501 gacaaaacag attatctttc ttcttctttt ctttagtgtc ttttaaaaaa aa
//