Typing tool
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Typing tool
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Complete norovirus genomes
| PP267274 | GII.6 | |
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| GII.P7 |
ORF1: 1..5084
ORF2: 5065..6717
ORF3: 6717..7496
LOCUS PP267274 7517 bp RNA linear VRL 09-FEB-2024
DEFINITION Norovirus GII isolate 2202171 nonstructural polyprotein (ORF1)
gene, partial cds; and VP1 (ORF2) and VP2 (ORF3) genes, complete
cds.
ACCESSION PP267274
VERSION PP267274.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7517)
AUTHORS Tao,L., Wang,X. and Ding,J.
TITLE Direct Submission
JOURNAL Submitted (04-FEB-2024) Department of Microbiology Laboratary,
Nanjing Municipal Center for Disease Control and Prevention
affiliated to Nanjing Medical University, Zizhulin No. 2, Nanjing,
Jiangsu 210003, China
COMMENT ##Assembly-Data-START##
Assembly Method :: BWA v. 0.7.17-r1188
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7517
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="2202171"
/isolation_source="stool sample"
/host="Homo sapiens"
/db_xref="taxon:122929"
/country="China"
/collection_date="17-Feb-2022"
/note="genotype: GII.6[P7]"
gene <1..5084
/gene="ORF1"
CDS <1..5084
/gene="ORF1"
/codon_start=3
/product="nonstructural polyprotein"
/protein_id="WVN22310.1"
/translation="SNDATAALGSQNSVNDSINTTPSNKEEAGAFSNIKVGFKKMLGA
VPKGTKAPSGDQHCPTVKIGPKTLTVPPEPPNGEGTVQFDAKSETVIGIPDLTTVQNE
HENTPYTVPPLSEREHRPATEPLPGTILEMWDGEFYHYSVYVSGGKALGVHKPPAAIS
LATIELTPISLYWRPVYTPNYLVCPDTLKGLAGEKFPYTAFSNNCYNFCCWVLELNDT
WLSRRSISRTTGFFKPYQSWNRKPLPTVDDGKIKKIANAILCALGSLFSKPIKDLLGK
LKPLNLLHLLASCDWTFAGVVETVILMAELFNVFWTPPDVSNFIASLIGDFELQGPED
LAVELVPVVMGGIGMVLGFTAEKIGRMLSSAASTLRACKDLGNYALDILKLVMKWFFP
KKEEKAEMETLRAIEDAVLDMEAIGNNHLTTLLKDKDSLTAFMKTLDLEEEKARKLST
KSSSPDIVGTINAILARIAAARSLLHKAKEEMFSRIRPVVVMISGRPGIGKTHMARHL
AKNIANTMSGDQRVGLVPRNGVDHWDAYRGERVVLWDDYGMGNPVKDALTLQELADTC
PVTLNCDRIENKGKMFDSDVIIITTNLVNPAPLDYVNFEACSRRIDFLVYAESPEIEK
VKRDFPGQPDMWKDYFKQDFSHIKLTLAPQGGFDKNGNTPHGKGTMRSLTQGSLTARV
AGLVHERKDEFQLQGDALQTYNFDTNRVSAFRKLAADNKYGIMETMRVGAALKNVKTL
EDLKVALRDVKFNECEIIYRNSKYRVSSNGKGSVSVDKVEDHTSHTANEVGSALLRLR
QARARYYVSCFQDLVYTLIQVAGASFVVNRISKRFCWERWVKPTETQEASEPEKEVAQ
GRWEIEPKDTEPEGKKGKNKKGRGKKHTAFSSKGLSDEEYDEFKRIREERNGKYSIEE
YLQDRDRYYEEVAVARATEEDFCEEEEAKIRQRIFRPTRKQRKEERGVLGLVTGSDIR
KRRPDDFQPKGNLWADDTRSVDYNERLDFEAPPSVWSRIVPLGTGWGFWVSSNLLITT
THVLPKGLKELFGVEVKQIQIHKSGEFCRFRFPRPIRPDVTGLVLEEGAPEGTVCSIL
VKRPTGEMIPLAVRMGTHASMKIQGRTVGGQMGMLLTGANAKNMDLGTGPGDCGCPYI
YKRGNDIVVAGVHTAAARGGNTVICATQGQDGEAVLEGNEDLGTYCGAPILGPGKAPK
LSTKTKFWRSSPDALPPGTYEPAYLGGKDPRVEKGPSLQQVMRDQLKPFTEPRGKPPR
PAVLEEAKKTVMNVLEQTIDPAKPWTYSQACASLDKTTSSGSPHHVRKNDHWNGESFT
GPLADQASKANLMYEQAKHVQPMYTAALKDELVKTDKIYKKIKKRLLWGSDLGTMIRC
ARAFGGLMDSMKASCIALPCRVGMNMNEDGPIIFDKHSKYRYHYDADYSRWDSTQQRS
ILSAAMEVMVRFSAEPELAQVVAEDLLAPSQLDVGDFVISVQEGLPSGVPCTSQWNSI
AHWILTLSAMAEVSGLSPDVVQAHSCFSFYGDDEIVSTDINLDPMKLTQKLREYGLVP
TRPDKTEGPLVITEDLTGLTFLRRSIARDPAGWFGKLDQDSILRQLYWTRGPNHENPY
ESMVPHSQRATQLMALLGEASLHGPQFYKKVSKMVINEIKNGGLEFYVPRQEAMFRWM
RFSDLSTWEGDRNLAPEGVNEDGVE"
mat_peptide <1..992
/gene="ORF1"
/product="p48"
mat_peptide 993..2090
/gene="ORF1"
/product="NTPase"
mat_peptide 2091..2609
/gene="ORF1"
/product="p22"
mat_peptide 2610..3008
/gene="ORF1"
/product="VPg"
mat_peptide 3009..3551
/gene="ORF1"
/product="Pro"
mat_peptide 3552..5081
/gene="ORF1"
/product="RdRp"
gene 5065..6717
/gene="ORF2"
CDS 5065..6717
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="WVN22311.1"
/translation="MKMASNDAAPSNDGAANLVPEANNEVMALEPVVGASIAAPVVGQ
QNIIDPWIRENFVQAPQGEFTVSPRNSPGEMLLNLELGPELNPYLSHLSRMYNGYAGG
MQVQVVLAGNAFTAGKIIFAAVPPHFPVDNISAAQITMCPHVIVDVRQLEPVLLPLPD
IRNRFFHYNQENTPRMRLVAMLYTPLRANSGEDVFTVSCRVLTRPAPDFEFTFLVPPT
VESKTKPFTLPILTLGELSNSRFPAAIDMLYTDPNESIVVQPQNGRCTLDGTLQGTTQ
LVPTQICAFRGTLISQNARAADLTDSPQRARNHPLHVQVKNLDGTQYDPTDDIPAVLG
AIDFKGTVFGVASQRDVSGTQEQGHYATRAHEAHIDTTDPKYAPKLGTILIKSESPDF
TTNQPIRFTPVGMGDNNWRQWELPDYSGSLTLNMNLAPAVSPSFPGERILFFRSIVPS
AGGYGSGYIDCLIPQEWVQHFYQEAAPSQSAVALVRYVNPDTGRNIFEAKLHREGFLT
VANSGNNPIVVPPNGYFRFEAWVNQFYTLAPMGSGQGRRRAQ"
gene 6717..7496
/gene="ORF3"
CDS 6717..7496
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="WVN22312.1"
/translation="MAGAFFAGLAGDVVSNGIGSLINAGANAVNQKVEYDFNKQLQMA
SFKHDKEMLQSQVLATKQLQQEMMNIKQGMLTAGGFSPADAARGAVNAPMTRILDWNG
TRYWAPNSMKTTSYSGQFSSSPVHRSPAPLQHIAPPKSKLQSDSASVYSSPSTASSQS
THSTVLSAGTGSSRSTPTSTATSTLSRTSDWVRGQNERLGPFMDGALQTTFVTPPSSK
ASSDGTVSTVPKAVLDSWTPMFNTHRQPLFAHLRRRGESQI"
ORIGIN
1 cgtctaacga cgctaccgct gcccttggca gtcaaaactc tgtcaatgac agtatcaaca
61 ccaccccttc aaacaaagaa gaggctggtg cattctccaa catcaaagtt ggatttaaga
121 aaatgctggg tgccgtaccc aagggtacta aagcacccag cggtgaccag cactgcccaa
181 cagttaagat cgggcccaaa acactaacag tcccccctga acccccaaat ggtgaaggca
241 ctgtacagtt tgacgcaaaa tcggaaactg taattgggat accggacttg acaacagtgc
301 aaaatgaaca tgaaaacacc ccatacactg tccctccact gagtgagagg gaacacagac
361 cagccactga gccacttcct ggcacaatat tggagatgtg ggatggtgaa ttttatcact
421 actctgtgta cgtcagcggc ggcaaagctc tgggggttca caaacctccg gcagctataa
481 gtctcgcgac gatagagctc acccccatat ctctatactg gaggcccgtt tacaccccca
541 actatctggt ctgtccagac acactgaaag gtctcgctgg tgaaaagttc ccctacacgg
601 ccttcagcaa caattgctac aacttctgtt gttgggtgct tgaactcaat gacacgtggc
661 ttagcagaag aagcatttct agaactaccg gcttcttcaa accgtaccag tcgtggaaca
721 ggaaacctct cccaacagtt gatgatggaa agatcaaaaa gattgccaac gcgatccttt
781 gtgcgctcgg ttcgctgttc tcaaagccaa tcaaggacct gctaggcaag ctcaaaccat
841 tgaacttact acacctgctc gcgtcgtgtg attggacgtt tgcaggtgta gtggagacag
901 tcatcttaat ggcagaactc ttcaacgtct tttggacccc gccagacgtc tctaatttta
961 tagcctccct gataggtgat tttgaattgc agggacctga ggacttggcg gtagagcttg
1021 ttcctgtggt tatgggtggt ataggaatgg ttctcggctt cacagctgag aagataggtc
1081 gcatgctgtc gtccgctgca tcaacgctgc gggcgtgtaa agacctaggg aactatgccc
1141 ttgacatact taaattggtc atgaaatggt tcttcccaaa gaaagaggag aaagccgaaa
1201 tggaaacctt aagggcgatt gaggatgccg tcctagatat ggaggccata ggtaacaacc
1261 acctcacgac cctcctcaag gataaagaca gtctcacggc cttcatgaag accttggatc
1321 tggaggaaga gaaagcaagg aagctatcca ccaaatcatc ctcaccggac atcgtcggca
1381 ctatcaatgc catactggct aggatagctg ccgctagatc cctcctgcac aaagccaaag
1441 aggaaatgtt tagcaggatt agaccggtgg ttgttatgat ctcaggcaga cctggtattg
1501 gcaaaactca tatggcgaga catctggcca aaaacatcgc caacaccatg agtggtgacc
1561 aaagagtcgg gctcgttccg cgcaacgggg tcgaccactg ggacgcttac agaggagaga
1621 gggtggtctt gtgggatgat tatggaatgg ggaaccctgt caaagatgct ttaacactac
1681 aagagctagc tgacacatgc ccagtcactc tgaactgtga caggatcgag aacaagggaa
1741 aaatgttcga cagcgatgtc atcataatca cgaccaacct agtcaaccct gcacctctcg
1801 attatgtgaa cttcgaggcg tgctctagga ggattgattt cttggtctat gcagagtcac
1861 cagaaattga gaaggttaag agagatttcc ctggtcaacc tgacatgtgg aaagactatt
1921 tcaaacaaga cttttcccat ataaagctaa ccctagcccc acaaggcgga tttgacaaga
1981 atggtaacac cccgcatggt aagggcacca tgcgatccct cacccagggg tccctgaccg
2041 caagggttgc aggccttgtt catgagagaa aggatgagtt ccagctacaa ggggatgccc
2101 tccagacgta caactttgac accaataggg tctctgcgtt caggaaactg gctgcagaca
2161 acaagtatgg aatcatggaa acaatgagag tgggtgcagc gctcaagaat gtcaaaactc
2221 tggaagatct gaaggtcgcc ttgagagatg tgaagttcaa tgagtgtgaa ataatttaca
2281 ggaactctaa gtaccgggtc tcttccaacg gcaagggctc tgtttctgtt gacaaagttg
2341 aggaccacac gtctcatact gcaaatgaag tgggctcagc actcctcaga ctcaggcaag
2401 caagggctag gtactatgtc agctgcttcc aagacctcgt ctacactctc atacaggttg
2461 ctggggcgtc attcgttgtc aacaggatct ctaaaaggtt ctgctgggaa aggtgggtta
2521 aaccaaccga aacccaagaa gcgagtgagc ccgaaaagga agtagctcaa ggtagatggg
2581 agatagagcc caaggacaca gaaccagaag gcaagaaggg taagaacaag aaggggagag
2641 gtaagaaaca cacagccttc tccagcaaag gcctaagtga tgaagagtat gatgagttca
2701 agagaatcag agaagagagg aacggaaaat actccattga ggaatacctg caagaccggg
2761 accgctacta tgaagaagtg gcagttgctc gggcaacaga agaggacttt tgtgaagaag
2821 aagaagccaa aataagacaa agaatcttcc gcccgacaag gaagcaaagg aaagaggaaa
2881 ggggggtact tggtttagtc actggttcag atatcaggaa gaggagacca gacgattttc
2941 aaccaaaagg caacttgtgg gcagatgaca ctaggagtgt ggactacaat gagagacttg
3001 actttgaggc tccaccaagt gtctggtcaa gaatagtccc attgggcact ggttggggct
3061 tctgggtttc atcaaacctc ctgatcacaa caacacacgt cctgcccaag gggctcaagg
3121 aactctttgg ggtcgaagtc aaacaaattc aaatccacaa gtcaggagag ttctgcaggt
3181 ttaggttccc aagaccaatc aggccagatg tcacaggact cgtgctggag gaaggtgctc
3241 ctgaaggtac tgtctgttct atactcgtta agaggcctac aggtgagatg atccccctag
3301 cagtgaggat gggcacgcat gcgtccatga aaatacaggg taggaccgtc ggtggtcaga
3361 tgggaatgct tctcacaggg gcaaatgcaa agaacatgga tctcggcacc ggtcctggtg
3421 actgcggttg tccttacatc tataagcgtg gcaacgacat agttgtcgcg ggtgtccaca
3481 ccgcagcagc ccgggggggc aatactgtca tttgtgccac tcaaggacaa gacggagagg
3541 cagtcctcga gggaaatgaa gaccttggca cctactgtgg tgctccaatt ctgggccctg
3601 gtaaagcgcc taaactcagc acaaaaacta aattttggcg ctcatcacca gatgccttac
3661 ctcctggtac gtatgagcct gcttatctgg ggggtaagga tcccagagtg gaaaaggggc
3721 cctccctgca gcaagttatg agagaccagc tgaaaccatt cacagaaccc aggggcaaac
3781 cacctagacc agcagtttta gaagaggcta aaaagacagt gatgaacgtt ctagaacaga
3841 ccattgatcc tgctaaacca tggacttact cacaagcatg tgcttcactg gacaagacca
3901 cttctagtgg tagcccccac catgtcagga agaatgacca ctggaatggg gagtctttca
3961 ctggtcccct tgcggaccaa gcatccaaag ccaacctcat gtatgaacag gcaaagcacg
4021 tacagcccat gtacacggcc gcgctcaaag atgaacttgt taagactgat aagatctaca
4081 agaaaataaa gaagagactc ctatgggggt cagaccttgg cacgatgatc aggtgtgcca
4141 gggcttttgg cggccttatg gacagtatga aagcaagttg tatagccctt ccatgcaggg
4201 tggggatgaa catgaacgag gatggcccta tcatatttga caagcactcc aagtataggt
4261 accactatga tgctgactac tctaggtggg actcaaccca gcaaaggagc attctttccg
4321 ccgccatgga ggtgatggtg aggttctctg ctgaaccaga attggcacaa gtggtcgcag
4381 aggatctttt agcgcctagc cagctagatg ttggcgattt tgtcatctca gtccaggagg
4441 gcctaccatc aggagtcccg tgtacgtcgc aatggaactc aatagcgcac tggattctaa
4501 ctctgagcgc aatggcagaa gtgtcaggtc tctcaccaga cgttgtccaa gcccactcct
4561 gtttctcatt ttatggtgac gatgagatcg tcagcactga catcaacctt gaccccatga
4621 aattgacaca gaaactcagg gagtatggtc tggtccccac ccggcctgat aagactgagg
4681 gccccctcgt tataactgaa gacctcaccg gcctgacatt cctgcgcaga tcgattgcac
4741 gggatccagc tggatggttt ggaaaattgg atcaagactc aatcctcagg cagttgtact
4801 ggacaagggg acccaatcac gaaaacccat acgagagcat ggttccccac tcccagcgag
4861 ctactcagct catggccctt cttggtgagg cttcattaca tggtccccag ttttacaaga
4921 aagttagcaa gatggtcatc aatgaaatta agaatggtgg tctggagttt tatgtgccca
4981 gacaagaggc catgtttagg tggatgagat tctctgacct cagcacatgg gagggcgatc
5041 gcaatcttgc tcccgagggt gtgaatgaag atggcgtcga atgacgccgc tccatcaaat
5101 gatggtgctg ccaacctcgt accagaggcc aacaatgagg ttatggcact tgaaccggtg
5161 gtgggagcct caatcgcggc tcctgttgtc ggtcagcaga atataattga cccctggatt
5221 agagaaaatt ttgttcaagc accacagggc gagtttactg tttcgccaag gaactcgccc
5281 ggtgagatgc ttctaaatct tgaattgggc ccagaactta acccctattt gagtcatttg
5341 tcccgcatgt acaatgggta tgctggtggc atgcaggttc aggtggtcct agctgggaat
5401 gcgttcacag ctgggaagat catctttgcc gctgtgccac cacacttccc tgtggacaat
5461 attagtgcag ctcagataac tatgtgcccc catgtgattg ttgatgtgag acagcttgaa
5521 ccagtgcttc tacccctccc cgatataaga aataggttct tccattacaa ccaggaaaac
5581 accccccgga tgaggctcgt ggccatgctc tacacgcctc taagggctaa ttccggagag
5641 gatgtgttca ctgtgtcctg tagggttctg actcgccccg ctccagattt tgaattcaca
5701 ttcttagttc caccaactgt tgaatcaaaa acaaaaccct ttactctacc tattttaacc
5761 cttggtgagt tgtctaattc ccgtttccct gctgctatag atatgcttta cactgatccc
5821 aatgaatcta tagttgttca gccccaaaat ggtagatgca cccttgacgg cacgctgcag
5881 ggcacaacac aattggtccc aacacagatt tgtgccttta gaggtactct gatcagtcag
5941 aatgcgagag cggccgatct aacagattcc ccccagagag cccgcaatca cccgttgcac
6001 gtccaggtca agaacctaga tggcacacag tatgacccaa cagatgacat ccctgcagtc
6061 ctgggggcta ttgacttcaa aggtacagtg ttcggagtgg cgagtcagag agacgtctct
6121 ggaacacaag aacaaggtca ttatgccacc cgggctcatg aagcacacat tgacacaact
6181 gatccaaagt atgcacctaa attaggcaca attctcatca aatctgaatc ccctgatttc
6241 accacaaatc agcccattag gtttactcca gtgggcatgg gcgacaacaa ttggagacag
6301 tgggaattgc ctgactattc tggtagtttg actctaaata tgaaccttgc ccctgctgtc
6361 tccccatctt tccctggtga acgaatcctt ttctttaggt ctatagtacc atcagctgga
6421 ggctacgggt ctggttatat agactgcctc ataccccagg aatgggtgca acatttctac
6481 caggaggcag cgccttcaca atctgctgtt gcactggtta ggtatgtcaa ccccgacact
6541 ggacgtaaca tctttgaggc caaattgcac agagaagggt tcctcaccgt ggctaattct
6601 ggaaacaatc ccattgtggt tccccctaat ggttatttta gatttgaggc ttgggttaat
6661 caattttaca cacttgcccc catgggatct ggacaggggc gtagaagagc tcagtaatgg
6721 ctggagcctt cttcgcaggg ctagcaggtg atgtcgtgtc gaacggcatc ggttccctca
6781 ttaatgcagg tgctaacgca gtcaatcaaa aggttgagta tgattttaat aagcaacttc
6841 aaatggcatc attcaaacat gataaggaga tgttacaatc acaggtgttg gcaaccaaac
6901 aactgcagca ggagatgatg aacataaagc aggggatgtt gaccgctggc ggcttttctc
6961 ctgcggatgc tgctagaggg gctgttaacg ctccaatgac aagaatattg gactggaatg
7021 gcacaagata ttgggcacct aatagcatga aaaccacaag ctactcagga caattctcta
7081 gtagccctgt ccacaggtct cctgctcccc tccagcatat tgccccacca aaaagtaagt
7141 tgcaaagtga ttctgctagt gtgtatagct ccccttccac tgcttcttca caatcaactc
7201 attcaacagt gttgtctgca ggaactgggt cgtccagatc cacccccacg tccacagcaa
7261 cctccaccct gtctaggacc agcgactggg ttagaggaca gaatgaaagg cttggcccgt
7321 ttatggatgg tgctctccaa actacctttg tcacaccacc atcgagcaaa gcttcatcag
7381 atgggacagt ctcgaccgtg cccaaagctg ttttggactc ctggactcct atgttcaaca
7441 cgcataggca gcctctcttc gcccacttgc gtaggcgagg ggagtcacag atttagtgaa
7501 aagagtgatt aggcttt
//