Typing tool
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Typing tool
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Complete norovirus genomes
| PP267273 | GII.6 | |
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| GII.P7 |
ORF1: 1..5090
ORF2: 5071..6714
ORF3: 6714..7490
LOCUS PP267273 7508 bp RNA linear VRL 09-FEB-2024
DEFINITION Norovirus GII isolate 21121517 nonstructural polyprotein (ORF1)
gene, partial cds; and VP1 (ORF2) and VP2 (ORF3) genes, complete
cds.
ACCESSION PP267273
VERSION PP267273.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7508)
AUTHORS Tao,L., Wang,X. and Ding,J.
TITLE Direct Submission
JOURNAL Submitted (04-FEB-2024) Department of Microbiology Laboratary,
Nanjing Municipal Center for Disease Control and Prevention
affiliated to Nanjing Medical University, Zizhulin No. 2, Nanjing,
Jiangsu 210003, China
COMMENT ##Assembly-Data-START##
Assembly Method :: BWA v. 0.7.17-r1188
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7508
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="21121517"
/isolation_source="stool sample"
/host="Homo sapiens"
/db_xref="taxon:122929"
/country="China"
/collection_date="15-Dec-2021"
/note="genotype: GII.6[P7]"
gene <1..5090
/gene="ORF1"
CDS <1..5090
/gene="ORF1"
/codon_start=3
/product="nonstructural polyprotein"
/protein_id="WVN22307.1"
/translation="MASNDATTAFGSQNSVNDSINTTPSNKEEVGAFSNIKVGFKKML
GAVPKGTKAPSGDQHCPSVKIGTKTLIVPPEPPNGEDTVQFDAKSETVRGLPDLTTVQ
NEHENTPYTVPPLSEREHRPATEPLPGTILEMWDGEFYHYSVYVSGGKALGVHKPPAA
ISLATIELTPISLYWRPVYTPNYLVCPDTLKGLAGEKFPYTAFSNNCYNFCCWVLELN
DTWLSRRSISRTTGFFKPYQSWNRKPLPTVDDGKIKKVANAILCALGSLFSKPIKDLL
GKLKPLNLLHLLASCDWTFAGIVETVILMAELFGIFWTPPDVSSFIASLIGDFELQGP
EDLAVELVPVVMGGVGMVLGFTAEKIGRMLSSAASTLRACKDLGNYALDILKLVMKWF
FPKKEEKAEMETLRAIEDAVLDMEAIGNNHLTTLLKDKDSLTAFMKTLDLEEEKARKL
STKSSSPDIVGTINAILARIAAARSLLHKAKEEMFSRIRPVVVMISGRPGIGKTHMAR
HLAKSIANTMSGDQRVGLVPRNGVDHWDAYRGERVVLWDDYGMGNPVKDALTLQELAD
TCPVTLNCDRIENKGKMFDSDVIIITTNLVNPAPLDYVNFEACSRRVDFLVYAESPEI
EKVKRDFPGQPDMWKDHFKPDFSHIKLTLAPQGGFDKNGNTPHGKGTMRSLTQGSLTA
RVAGLVHERRDEFQLQGNDLQTYNFDTNRVSAFRKLAADNKYGIMETMRVGTALKSVK
TLEDLKVALRDVKFNECEIIYRNSKYRVSSNGKGSVSVDKVEDQTSQTANEVGAALLR
LRQARARYYVSCFQDLVYTLIQVAGASFVVNRISKRFCWERWVKPTETQETSEPEKEV
AQGRWEIEPKDTEPEGKKGKNKKGRGKKHTAFSSKGLSDEEYDEFKRIREERNGKYSI
EEYLQDRDRYYEEVAVARATEEDFCEEEEAKIRQRIFRPTKKQRKEERGVLGLVTGSD
IRKRRPDDFQPKGNLWADDTRSVDYNERLDFEAPPSVWSRIVPLGTGWGFWVSSNLLI
TTTHVLPKGINELFGVEVKQIQIHKSGEFCRFRFPRPIRPDVTGLVLEEGAPEGTVCS
ILVKRPTGEMIPLAVRMGTHASMKIQGRTVGGQMGMLLTGANAKNMDLGTGPGDCGCP
YIYKRGNDIVVAGVHTAAARGGNTVICATQGQDGEAVLEGNENLGTYCGAPILGPGKA
PKLSTKTKFWRSSPDALPPGTYEPAYLGGKDPRVEKGPSLQQVMRDQLKPFTEPRGKP
PRPAVLEEAKKTVMNVLEQTIDPAKPWTYSQACASLDKTTSSGSPHHVRKNDHWNGES
FTGPLADQASKANLMYEQAKHVQPVYTAALKDELVKTDKIYKKIKKRLLWGSDLGTMV
RCARAFGGLMDSMKASCVALPCRVGMNMNEDGPIIFDKHSKYRYHYDADYSRWDSTQQ
RSILSAAMEVMVRFSAEPELAQVVAEDLLAPSQLDVGDFVISVQEGLPSGVPCTSQWN
SIAHWILTLSAMAEVSGLSPDVVQAHSCFSFYGDDEIVSTDINLDPMKLTQKLREYGL
VPTRPDKTEGPLVITEDLTGLTFLRRSIARDPAGWFGKLDRDSILRQLYWTRGPNHEN
PYESMVPHSQRATQLMALLGEASLHGPQFYKKVSKMVINEIKSGGLEFYVPRQEAMFR
WMRFSDLSTWEGDRNLAPEGVNEDGVE"
mat_peptide <1..998
/gene="ORF1"
/product="p48"
mat_peptide 999..2096
/gene="ORF1"
/product="NTPase"
mat_peptide 2097..2615
/gene="ORF1"
/product="p22"
mat_peptide 2616..3014
/gene="ORF1"
/product="VPg"
mat_peptide 3015..3557
/gene="ORF1"
/product="Pro"
mat_peptide 3558..5087
/gene="ORF1"
/product="RdRp"
gene 5071..6714
/gene="ORF2"
CDS 5071..6714
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="WVN22308.1"
/translation="MKMASNDAAPSNDGAANLVPEATNEVMALEPVVGASIAAPVVGQ
QNIIDPWIRENFVQAPQGEFTVSPRNSPGEMLLNLELGPELNPYLSHLSRMYNGYAGG
MQVQVVLAGNAFTAGKIIFAAVPPHFPVDNISAAQITMCPHVIVDVRQLEPVLLPLPD
IRNRFFHYNQEDTPRMRLVAMLYTPLRANSGEDVFTVSCRVLTRPAPDFEFTFLVPPT
VESKTKPFTLPILTLGELSNSRFPAPIDMLYTDPNEAIVVQPQNGRCTLDGTLQGTTQ
LVPTQICSFRGTLISQTSRSADSTDSAPRVRNHPLHVQLKNLDGTPYDPTDEVPAVLG
AIDFKGTVFGVASQRNATGNSIGATRAHEVHIDTTNPRYTPKLGSVLMYSESNDFDDG
QPTRFTPIGMGADDWRQWELPEYSGHLTLNMNLAPAVAPAFPGERILFFRSVVPSAGG
YGSGHIDCLIPQEWVQHFYQEAAPSQSAVALIRYVNPDTGRNIFEAKLHREGFITVAN
SGNNPIVVPPNGYFRFEAWVNQFYTLTPMGTGQGRRRVQ"
gene 6714..7490
/gene="ORF3"
CDS 6714..7490
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="WVN22309.1"
/translation="MAGAFLAGLAGDAITSGVGSLINAGANAINQKVEYDFNKQLQLA
SFKHDKEMLQSQVLATKQLQQEMMNIRQGVLSAGGFSPTDAARGAVNAPMTKILDWNG
TRYFAPSSMKTTSYSGQFSSNPVHRQPTLPRSESPKIKASSDSVSVYSSASTAPSQST
HSTALTAGSSSSRTTSSPTVASTLSRTSDWVRGQNERLSPFMDGALQTTFVTPPSSKA
SSYGSVSTVPKAVLDSWTPMFNTHRQPLFAHLRRRGESQI"
ORIGIN
1 agatggcgtc taacgacgct accactgcct ttggcagcca aaactctgtc aatgacagta
61 tcaacaccac cccttctaat aaggaagagg ttggtgcatt ctccaacatc aaagttggtt
121 ttaagaaaat gctgggtgcc gttcctaagg ggaccaaagc acccagtggt gaccagcact
181 gcccctcagt taagatcggg accaagacat taatagtccc tcctgagccc ccaaatggtg
241 aagacaccgt gcagtttgat gcgaagtcgg aaactgtgcg cgggttacca gacttgacaa
301 cggtgcagaa tgaacatgaa aacacaccat acaccgtccc cccactgagt gaaagggagc
361 acagaccagc cactgaaccg cttcctggca caatactgga gatgtgggat ggtgaattct
421 accattactc tgtgtacgtc agcggtggca aagccctagg ggttcacaaa ccccctgcag
481 cgataagcct cgcgacgata gagctcacac ccatatctct ttattggagg cccgtttaca
541 cccccaacta tctggtctgc ccagacacgt tgaagggcct tgctggtgag aagtttccct
601 acacggcctt cagcaacaac tgttacaact tctgttgctg ggtgctcgag ctcaatgaca
661 cgtggcttag caggagaagc atctctagga ccaccggttt cttcaaacca taccagtctt
721 ggaataggaa acccctccca accgttgatg atggaaagat caaaaaggtg gccaacgcaa
781 ttctctgtgc acttggatca ctgttttcaa aaccgatcaa ggacctattg ggcaaactta
841 aaccattgaa cttgctgcac ttgctcgcat catgtgactg gacgtttgcg ggtatagtag
901 agacagtcat cctaatggcg gaacttttcg gcatcttttg gacaccgcca gacgtctcca
961 gtttcatagc ctccctgata ggtgattttg aattgcaagg gcctgaggac ctggctgtgg
1021 agctcgtacc cgtggtcatg ggtggcgtag gaatggttct cggctttact gctgagaaga
1081 taggccgcat gctatcgtcc gctgcatcaa cactacgggc gtgcaaagac ttggggaatt
1141 atgctcttga catactgaaa ctggttatga agtggttctt cccaaagaaa gaagagaaag
1201 ccgagatgga aaccctaagg gcgattgagg atgccgtcct ggatatggaa gctataggaa
1261 ataaccatct cacaaccctc ctcaaggaca aggatagcct cacggctttc atgaagactc
1321 tagatctgga agaagagaag gcaaggaagc tgtccaccaa atcatcctcg ccagacattg
1381 tcggcaccat taatgccata ctagctagga tagctgctgc caggtccctc ttgcacaagg
1441 ctaaagaaga aatgttcagt agaatcagac ccgtggttgt catgatctcg ggtagacctg
1501 gcattggcaa aacccacatg gctagacact tggctaagag tatcgccaac accatgagcg
1561 gcgaccagag agtggggctc gtcccacgta acggggttga tcattgggac gcctacaggg
1621 gagagagggt ggtcttatgg gatgattacg gcatgggaaa ccctgtcaaa gatgccctaa
1681 cactgcaaga gctggccgac acctgcccag taactctaaa ctgtgacagg attgagaaca
1741 aggggaagat gtttgacagt gatgtcatca taatcacgac taatttagtc aacccagcac
1801 ccctcgatta tgtaaacttc gaggcgtgct ccagaagggt cgactttctg gtctatgcag
1861 agtcaccaga aattgagaag gttaagagag acttccccgg ccaacctgac atgtggaagg
1921 accactttaa gccagacttt tctcacataa agctgactct agccccacag ggtggatttg
1981 acaagaatgg caacaccccg catggtaagg gtaccatgcg atccctaacc caggggtccc
2041 tgactgcaag ggttgcaggc ctcgtccatg aaaggaggga cgagtttcag ctccagggga
2101 acgaccttca aacatataac tttgacacca atagagtctc tgcatttagg aagctggccg
2161 cagataacaa gtatgggatc atggagacta tgagagtggg cacagcgctt aagagtgtca
2221 agaccttgga agatctgaaa gtcgcactga gggatgtgaa attcaatgag tgcgagataa
2281 tttacagaaa ctccaaatac cgggtctctt ccaatggtaa aggttctgtc tctgttgaca
2341 aagttgagga ccaaacatcc cagaccgcaa acgaggtggg tgcggcactc cttagactca
2401 gacaggcaag agccagatac tatgtcagct gcttccaaga cctcgtctac actctaatac
2461 aggtcgccgg agcatcattc gttgtcaaca ggatctctaa aaggttctgc tgggagaggt
2521 gggtcaaacc aaccgagacc caggaaacga gtgaacccga aaaggaagtg gcccaaggca
2581 gatgggaaat tgagcccaag gacacagaac cagaaggtaa gaagggcaag aacaagaaag
2641 gaagaggcaa gaaacacaca gctttttcca gtaaaggctt gagtgatgag gagtatgatg
2701 agttcaagag aatcagagaa gagaggaacg gaaaatactc cattgaggaa tacctgcaag
2761 accgggaccg ctactatgag gaagtggcag tcgcccgggc gacagaggag gacttctgtg
2821 aagaggagga ggccaagata agacaaagaa tctttcgccc cacaaagaaa cagaggaagg
2881 aagaaagggg ggtgcttggt ttggttactg gctcagacat caggaagaga agaccagacg
2941 attttcaacc gaagggtaac ctgtgggcag acgacaccag gagtgtggac tacaacgaga
3001 gacttgattt cgaggctccc ccgagtgtct ggtcaagaat agtcccattg ggcactggct
3061 ggggcttctg ggtctcttca aacctcctga ttacaacaac gcacgtccta cctaagggga
3121 ttaatgaact ctttggagtt gaggtcaaac agattcagat tcataagtct ggagagttct
3181 gtagatttag attcccaaga ccaattagac cagatgtcac agggctcgtg ttggaggaag
3241 gcgctccaga aggcactgtc tgctccatac tcgtaaagag acctacaggt gagatgatcc
3301 ccctggcagt gaggatgggc acgcacgcat ccatgaaaat acagggtagg accgtcggtg
3361 gccagatggg aatgctcctc acaggggcaa atgcgaagaa catggatctt ggcaccggtc
3421 ctggcgactg cggttgccct tacatctaca aacgtggcaa tgatatagtt gtcgcgggtg
3481 tccacaccgc agcagcccgg ggaggtaaca ctgtcatatg tgccactcaa gggcaagatg
3541 gggaagcagt ccttgaagga aatgagaacc ttggcactta ctgcggcgct ccaatcttgg
3601 gtccaggcaa ggcgcccaaa cttagcacga agaccaagtt ctggcgttca tcaccagacg
3661 ctttgccgcc aggcacctat gagcctgcct acttgggagg taaggaccct agagtggaga
3721 aaggaccatc cctgcagcaa gttatgaggg accagctaaa acctttcaca gaacccagag
3781 gtaagccacc tagacctgca gtcttagaag aagccaaaaa gacggtgatg aatgttctag
3841 agcagaccat cgaccctgct aaaccgtgga cctattccca agcatgcgct tcactggaca
3901 agaccacttc cagtggtagc ccccatcatg tcaggaaaaa tgaccactgg aatggggaat
3961 ccttcactgg tcccctcgca gaccaagcat ccaaagccaa cctcatgtac gagcaggcca
4021 aacatgtgca gcccgtgtac acggccgcac ttaaagatga actagtcaaa actgataaga
4081 tctacaagaa gataaagaaa aggctattat gggggtcgga tcttggcaca atggtcaggt
4141 gcgccagggc ctttggcggt ctcatggata gcatgaaggc aagctgtgta gccctcccat
4201 gtagggtggg aatgaacatg aatgaagatg gccccatcat atttgacaag cattctaagt
4261 ataggtacca ttatgatgct gactattcca gatgggactc aacccagcaa aggagcattc
4321 tctcggccgc tatggaagtg atggtgcggt tctctgctga accagagctg gcacaagtgg
4381 ttgcagagga cctcctggca cccagccaac tagatgttgg cgacttcgtc atctcagtcc
4441 aggagggtct gccatcaggg gtcccatgca catcacaatg gaattcaata gcacactgga
4501 tcctaacctt gagtgcaatg gcagaagtgt cgggtctctc accagatgtt gttcaagccc
4561 actcctgttt ctcattctac ggtgatgatg agatcgtcag cactgacatc aaccttgatc
4621 ccatgaagtt gacacagaag ctcagagagt atggcctggt ccccacccga cctgacaaaa
4681 ctgagggtcc cctcgtgata actgaagatc tcaccggcct aacgttcctg cgtaggtcaa
4741 ttgcacggga cccagctggg tggtttggaa aattggaccg agactcaatc ctcagacagt
4801 tgtactggac aaggggcccc aaccatgaga acccatatga gagcatggtc cctcattccc
4861 agcgggccac acaacttatg gcccttctcg gtgaggcttc actgcacggt ccccagtttt
4921 acaagaaagt tagcaagatg gtcattaatg agatcaaaag tggtggtctg gaattctatg
4981 tgcccagaca agaggccatg ttcagatgga tgagattctc tgacctcagc acatgggagg
5041 gcgatcgcaa tcttgctccc gagggtgtga atgaagatgg cgtcgaatga cgctgctcca
5101 tcgaatgatg gcgctgccaa cctcgtacca gaggccacca atgaggttat ggcacttgag
5161 ccggtggtgg gagcttcaat tgctgctcct gtcgtcggcc aacaaaatat aattgacccc
5221 tggattagag aaaattttgt tcaggcacca cagggtgagt ttactgtttc accaaggaac
5281 tcacctggtg agatgcttct aaatcttgaa ttaggccctg agctcaaccc ttatctgagt
5341 cacttgtccc gcatgtataa cggctatgct ggtggtatgc aggttcaggt ggtcctagct
5401 gggaatgcgt tcacagctgg taaaatcatc tttgccgccg tcccaccaca tttccctgtt
5461 gataacatta gtgcagccca aatcacaatg tgcccccatg taattgttga tgtaagacag
5521 cttgagccag tccttttgcc ccttcccgac ataaggaata gattctttca ttacaatcag
5581 gaagacaccc ctcggatgag acttgtggct atgttgtaca caccccttag agcaaattct
5641 ggtgaggatg tgtttacggt gtcttgcaga gttttgaccc gccctgcccc tgactttgag
5701 ttcacgtttt tggtgccacc aactgtggag tcaaagacta agccctttac actccctatt
5761 ctgactcttg gagagctgtc caactccaga ttccccgctc ctatagacat gttgtacacc
5821 gaccccaatg aggcaattgt ggtgcaacca cagaatggca ggtgcactct agatggaaca
5881 cttcaaggga ccactcaact ggtacccacc caaatttgct cctttagggg cacgctaatt
5941 agccagacgt cgaggtctgc agattcaaca gattcagccc cacgggtgag gaaccaccct
6001 ctccacgttc agctgaagaa cctcgatggg acaccatatg acccaacaga tgaggtgcca
6061 gcagttttgg gtgccataga cttcaaagga actgtgtttg gggtcgctag ccaaagaaat
6121 gccacaggga actctatagg agcaacccgc gcccatgaag tgcacataga taccacaaac
6181 cctagataca ctccaaagct tggctctgtg ttgatgtact ctgaatctaa tgattttgat
6241 gatggacaac ccacccgctt cacccccatt ggcatgggag ccgatgattg gcgccaatgg
6301 gaattgcctg aatattctgg tcacctcact ctcaacatga atttggcccc agcggttgcc
6361 cctgctttcc ctggtgagcg catcctcttc ttcagatcag tggtgccgtc tgctggtggc
6421 tatggatcag gtcacataga ttgcctcatc ccacaggagt gggttcagca tttctaccag
6481 gaggccgctc catcacagtc tgcggtggct cttatcagat atgtcaaccc tgacactgga
6541 agaaacatct ttgaggcaaa actgcataga gaagggttca tcactgtggc aaattctgga
6601 aacaacccca tagttgtgcc cccaaatggt tatttcaggt ttgaggcatg ggttaatcaa
6661 ttctacacac tcacccccat gggaactgga caggggcgca gaagagttca ataatggcag
6721 gagctttctt agctggattg gcaggtgacg ccataacaag tggtgtcggg tccctaatca
6781 atgctggggc caatgcaatt aaccaaaaag tagaatatga ctttaataaa cagctccaat
6841 tggcatcctt caaacatgac aaagagatgt tgcagtcaca agtactagcc actaaacagc
6901 tccagcagga gatgatgaac ataaggcaag gggtcttgtc cgctggcggc ttttccccta
6961 cagatgccgc gagaggtgct gtgaacgcgc caatgacaaa aattttggat tggaatggaa
7021 caaggtactt tgccccgagt agtatgaaga caaccagtta ttcgggccag ttttccagca
7081 accctgtgca taggcagccc actttacccc gttctgaatc cccaaaaatt aaggctagta
7141 gtgattctgt tagtgtgtat agttctgcat ctactgctcc ttcacaatca actcattcaa
7201 cggctttgac tgcggggtct agctcatcta ggacaacatc ctctcctaca gttgcttcca
7261 ccctatctag gactagtgac tgggtgagag gacaaaatga aaggcttagc ccgtttatgg
7321 atggtgctct ccaaacaact tttgtcacac caccatcgag caaggcttca tcatatgggt
7381 cggtctcaac cgttcccaaa gctgttttgg actcctggac tcctatgttt aatacccata
7441 ggcagcctct cttcgctcat ttgcgcaggc gaggggagtc acagatttag tgaaaagatt
7501 gattaggt
//