Typing tool
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Typing tool
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Complete norovirus genomes
| PP267272 | GII.4 Sydney | |
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| GII.P16 |
ORF1: 1..5073
ORF2: 5054..6676
ORF3: 6676..7482
LOCUS PP267272 7531 bp RNA linear VRL 09-FEB-2024
DEFINITION Norovirus GII isolate 2111232 nonstructural polyprotein (ORF1)
gene, partial cds; and VP1 (ORF2) and VP2 (ORF3) genes, complete
cds.
ACCESSION PP267272
VERSION PP267272.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7531)
AUTHORS Tao,L., Wang,X. and Ding,J.
TITLE Direct Submission
JOURNAL Submitted (04-FEB-2024) Department of Microbiology Laboratary,
Nanjing Municipal Center for Disease Control and Prevention
affiliated to Nanjing Medical University, Zizhulin No. 2, Nanjing,
Jiangsu 210003, China
COMMENT ##Assembly-Data-START##
Assembly Method :: BWA v. 0.7.17-r1188
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7531
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="2111232"
/isolation_source="stool sample"
/host="Homo sapiens"
/db_xref="taxon:122929"
/country="China"
/collection_date="23-Nov-2021"
/note="genotype: GII.4[P16]"
gene <1..5073
/gene="ORF1"
CDS <1..5073
/gene="ORF1"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="WVN22304.1"
/translation="VAVACNNNNDKEKSSGEGLFTNMSSTLKKALGARPKQPAPRDEP
QKPPRPPTPELVKRIPPPPPNGEEEEEPVIRYEVKSGISGLPELTTVPQPDVANTAFS
VPPLSLRENREAKEPLTGAILEMWDGEIYHYGLYVEKGLVLGVHKPPAAISMARVELS
PLSLYWRVVYTPQYLISPETLRRLNGEAFPYTAFDNNCYAFCCWVLDLNDSWLSRRMV
QRTTGFFRPYQEWNRKPLPTMDDSKIKKVANIFLCSLSTLFTRPIKDLIGKIKPLNIL
NILATCDWTFAGIVESLILFAELFGVFWTPPDVSAMIAPLLGDYELQGPEDLAVELVP
VVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFPKKEEANE
LAIVRAIEDAVLDLEAIENNHMTTLLKDKDSLATYMKTLDMEEEKARRLSTKSASPDI
VGTINALLARIAAARSLVHRAKEELSSRIRPVVVMISGKPGIGKTHLAREVARKVAST
LTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRIQELADTCPLTLNCD
RIENKGKVFDSEVIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEKAKRDFPG
QPDMWKDAFKPDFSHIKLQLAPQGGFDKNGNTPHGKGVMKTLTTGSLIARASGLLHER
MDEFELQGPTITTFNFDRNRITAFRQLAAENKYGLVDTMKVGNQLKGVKTMEELKQAI
RNVTIKRCRIIYGGSTYDLESDGKGKVLVEKVRNTSIQTNNELAGALHHLKHARIRYY
VKCVQEAVYSIIQIAGAAFVTTRIARRMNIQELWSKPQLDQNESETKEEAPKSEDDEF
VISSKDIKEEGKKGKNKTGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKYSIEEYLQ
DRDRYYEELAIAKATEEDFCEEEEIKIRQRIFRPTRKQRKEERATLGLVTGSEIRRRN
PDDFKPKGKLWADDNRSVDYNEKLDFEAPPSIWSRIVSFGSGWGFWVSPSLFITSTHV
IPAGITEAFGVPIKQIQIHKSGEFCRFRFPKPIRPDVTGMILEEGAPEGTVATVLIKR
PTGELMPLAARMGTHATMKIQGRMVGGQMGMLLTGSNAKGMDLGTTPGDCGCPYIYKR
GNDYIVIGVHTAAARGGNTVICATQGSEGEATLEGGDDKGTYCGAPILGPGGAPKLST
KTKFWRSSNTPLPPGTYEPAYLGGRDPRVRGGPSLQQVMRDQLKPFTEPRGKPPRPSV
LEAAKQTIINVLEQTLDPPQKWTYAQACASLDKTTSSGHPHHARKNEFWNGETFTGKL
ADQASKANLMFEEGKHMTPVYTAALKDELVKTEKIYGKIKKRLLWGSDLSTMIRCARS
FGGLMDEMKAHCISLPVRVGMNMNEDGPIIFEKHSRYKYHYDADYSRWDSTQQRAVLA
AALEIMVRFSAEPQLAQIVAEDLLAPSVVDVGDFKITINEGLPSGVPCTSQWNSITHW
LLTLCALSEVTKLSPDIIQANSMFSFYGDDEIVSTDIKLDPEQLTAKLKEYGLKPTRP
DKTEGPLIISEDLNGLTFLRRTVTRDPAGWFGKLDQSSILRQMYWTRGPNHEDPTETM
IPHSQRPIQLMALLGEASLHGPSFYSRISKLVITELKEGGMDFYVPRQEPMFRWMRFS
DLSTWEGDRNLAPNFVNEDGVE"
mat_peptide <1..969
/gene="ORF1"
/product="p48"
mat_peptide 970..2067
/gene="ORF1"
/product="NTPase"
mat_peptide 2068..2598
/gene="ORF1"
/product="p22"
mat_peptide 2599..2997
/gene="ORF1"
/product="VPg"
mat_peptide 2998..3540
/gene="ORF1"
/product="Pro"
mat_peptide 3541..5070
/gene="ORF1"
/product="RdRp"
gene 5054..6676
/gene="ORF2"
CDS 5054..6676
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="WVN22305.1"
/translation="MKMASSDANPSDGSAANLVPEVNNEVMALEPVVGAAIAAPVAGQ
QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG
FEVQVILAGNAFTAGKIIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD
VRNNFYHYNQSNDSTIRLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP
TVESRTKPFSVPVLTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT
QLSPVNICTFRGDVTHITGSHNYTMNLASQNWNNYDPTEEIPAPLGTPDFVGKIQGML
TQTTRTDGSTRGHKATVYTGSADFAPKLGRVQFETDTNHDFEANQNTKFTPVGVIQDG
STTHRNEPQQWVLPSYSGRNTHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD
CLLPQEWVQYFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV
IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAV"
gene 6676..7482
/gene="ORF3"
CDS 6676..7482
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="WVN22306.1"
/translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA
SFQFSSNLQQASFQHDKEMLQAQIEATKKLQQEMMRVKQAMLLEGGFSETDAARGAIN
APMTKVLDWSGTRYWAPDARITTYNSGHFSTPQPSGALPGRANLRDAVPARGPSTKSS
NSSAATSVYSNQTTSTILGSTAGSGTSVSSLPSTARTRSWVEDQNRSLSPFMRGAHNI
SFVTPPSSRSSSQGTVSTVPKEILDSWTGAFNTRRQPLFAHIRKRGESRV"
ORIGIN
1 gttgccgttg cttgcaacaa caacaacgac aaggaaaaat cttcaggtga aggcttattc
61 acaaatatgt cttccacctt aaagaaagcc ctcggggcta ggcccaaaca gcctgccccg
121 agagacgagc cacaaaagcc cccaagacca ccaactcccg agttggtcaa aaggataccc
181 cctcctccac ctaatggcga agaagaagaa gaaccagtca ttaggtatga ggttaagagt
241 gggatctctg gcctgcccga gctcacaaca gttccccaac cggacgtggc caatacagca
301 tttagtgttc caccactgag cttgagggaa aacagggagg ccaaggaacc gctaacaggg
361 gcaatactag agatgtggga tggagagata taccactatg gcctgtacgt ggagaaaggc
421 ttagtgttgg gtgtgcacaa accacctgca gccataagca tggcaagagt agagttgtcg
481 ccgctgtcat tgtactggcg tgtggtgtac actccccaat acctcatctc ccctgaaact
541 ctcaggaggc tcaacggaga ggcgtttcct tacaccgctt tcgacaacaa ctgctatgcc
601 ttttgctgct gggtgttaga cctcaatgac tcatggctta gcaggaggat ggtgcaaaga
661 acaacaggct tcttcaggcc ttaccaagag tggaatagaa aacccttgcc tactatggat
721 gactccaaaa taaagaaggt agcaaatata ttcctatgtt cattgtccac attattcacc
781 agacccataa aagacctcat aggaaaaatc aaaccactaa acatattgaa catcttggca
841 acgtgtgact ggacgtttgc cggaatagtg gagtctctga tattgtttgc cgagctcttc
901 ggagttttct ggacaccccc agatgtgtct gctatgatcg ctcccttact cggggactac
961 gagttacaag ggccagaaga ccttgccgtt gaactcgtac ctgtggtaat gggagggatt
1021 ggtttggtgt tgggattcac caaagagaaa atcggcaaaa tgttgtcctc agcagcatca
1081 acactcaggg cttgtaaaga tcttggtgcc tatggcttag agatactcaa attggtcatg
1141 aagtggttct tcccaaagaa agaggaggcc aatgagctgg ccatagtgag ggccatagag
1201 gatgccgtgc tagatcttga ggcaatagag aataaccaca tgacaaccct gttgaaagac
1261 aaagatagct tagcaacata catgaaaaca ctggacatgg aggaggagaa agccagaagg
1321 ttatccacaa aatctgcatc ccctgacata gttgggacaa tcaacgccct gctggctcga
1381 atagcagccg ccaggtcatt agtccacagg gccaaggaag agctgtctag caggataaga
1441 ccagtagttg ttatgatatc tggcaaacca ggaataggca aaactcatct ggccagggag
1501 gtggcaagaa aggtggcatc cactctcaca ggggaccaaa gagtcggact cataccaaga
1561 aacggtgtgg accattggga tgcatataaa ggtgagagag tcgtgctgtg ggacgactat
1621 ggcatgagta accccattca tgatgctctc cgcatacaag aattggctga tacgtgtccc
1681 cttaccttaa attgtgacag aattgaaaat aagggaaaag tttttgacag tgaagtcata
1741 ataattacaa caaaccttgc caacccagcc ccacttgatt atgtcaactt tgaggcctgt
1801 tccaggagaa ttgatttcct ggtgtacgct gaggcaccag aagtagaaaa ggcaaaacgg
1861 gattttcctg gtcagccaga tatgtggaag gacgccttca agccggactt ttcacacatc
1921 aagctacagc ttgcacctca gggcggcttt gacaagaatg gcaatacccc acatgggaaa
1981 ggagtgatga agaccctcac taccggttct ctgattgccc gcgcatcagg cctactgcat
2041 gagaggatgg atgaatttga actccaaggt cccacaatca ccactttcaa tttcgaccgg
2101 aatagaatca cagcattcag acaattggct gcagaaaaca agtatgggct ggtggacacc
2161 atgaaagttg gcaatcaact aaaaggagtg aaaaccatgg aagaactcaa acaagcaatc
2221 agaaatgtga ccatcaagag gtgccggatc atctacggtg gttccacgta tgaccttgaa
2281 tctgatggca agggcaaagt tttggtggaa aaggtcagga acacctctat acaaaccaac
2341 aacgagttgg ccggggcctt gcaccatctt aaacatgccc gaatcaggta ctatgtcaaa
2401 tgtgtgcaag aagcagtcta ttccatcata caaattgccg gtgctgcgtt tgtcaccacg
2461 cgcattgcac gccgcatgaa catacaagaa ctctggtcga agccacaatt agatcaaaat
2521 gaatcagaga ctaaggaaga ggcccccaag tcagaagatg acgagttcgt catatcttct
2581 aaggatatca aggaggaagg aaagaagggc aaaaacaaaa ctggccgtgg caagaaacac
2641 actgcattct ccagcaaggg cttgagcgat gaggagtatg acgagtacaa gaggataaga
2701 gaagagagaa acgggaagta ctctatagag gaatatcttc aagacagaga caggtactat
2761 gaggagctcg ccattgccaa ggccacggaa gaagacttct gtgaagagga ggaaatcaaa
2821 atccgtcaga gaattttccg tcccaccagg aaacaaagaa aggaggagag ggccacatta
2881 gggctggtaa ctggttcaga aatcagaaga agaaaccctg atgatttcaa acccaaaggg
2941 aaactgtggg ccgatgacaa cagaagtgtt gactacaatg agaaattgga ctttgaggcc
3001 cccccaagca tatggtctag aattgtgagc tttggttctg gctggggctt ctgggtgtca
3061 ccaagcctgt tcataacatc aacccatgtt atccctgcag gcataacaga agcatttgga
3121 gtccccatca aacaaattca gattcacaaa tcaggtgaat tttgccgatt cagattccca
3181 aaaccaatta gaccagatgt gacaggaatg atcttggaag aaggtgcgcc cgaaggcacc
3241 gtggcaactg tgctcatcaa acgccccacc ggagagctca tgcctcttgc agccagaatg
3301 ggaacacacg caaccatgaa gattcaaggc cgcatggttg gcggacagat gggtatgttg
3361 ctcactggat caaatgctaa agggatggat ttaggaacaa ctcctggtga ctgtggctgc
3421 ccttacatct ataaaagggg caatgactat atagtcattg gggtacacac tgcagcagcc
3481 cgtggtggaa acaccgtcat ctgtgccaca cagggaagtg agggtgaggc aactcttgag
3541 ggtggagatg acaaaggaac atactgtggg gcacccattc taggccctgg gggtgcacca
3601 aaattgagca ccaaaaccaa attttggagg tcatcgaaca cgccccttcc accagggaca
3661 tatgagcctg cctacctcgg tggccgtgac ccgcgtgtta ggggtgggcc ctccttacag
3721 caggtaatga gagaccaatt gaagccattc actgaaccca ggggcaaacc tccaagacca
3781 agtgttttgg aagcagccaa acaaaccatt atcaatgtcc tcgaacaaac cctggatcct
3841 ccacaaaaat ggacatacgc acaggcgtgt gcctcacttg acaaaaccac ctccagcggg
3901 catccacacc acgcccgaaa gaatgaattc tggaatggtg agaccttcac tggtaaattg
3961 gcagaccaag catcaaaagc aaacctaatg tttgaggaag ggaaacacat gacaccagtg
4021 tacacagcag cactcaagga cgagctagtc aagactgaga aaatctatgg aaagatcaag
4081 aagagactgc tctggggctc tgacttgtcc accatgatcc ggtgcgctag gtcatttggt
4141 gggctcatgg acgagatgaa ggcacactgc atatcactcc cagtacgagt tggcatgaat
4201 atgaatgaag atggcccaat aatatttgag aaacattcca gatataaata tcactatgat
4261 gcagactact ctcgctggga ttcaacacag cagagggcag tattagcagc agccttggaa
4321 atcatggtca gattctctgc agaaccacaa ttggcacaaa tagtcgctga ggatctactg
4381 gcccctagtg tagtagatgt aggagacttt aaaatcacaa taaatgaagg gctcccatct
4441 ggtgtgccat gcacttctca atggaactcc ataacacact ggctgctaac tctctgtgcc
4501 ttgtctgaag tcaccaaact gtcccctgat attatacaag caaattccat gttctcattt
4561 tacggtgatg acgagattgt cagcaccgac ataaaattgg accctgaaca gctgaccgcc
4621 aagttgaagg agtacggcct gaaaccaact cgcccagaca agaccgaggg acccctgatc
4681 atcagtgaag atttgaacgg actcactttc ctccgaagga cggtgactcg tgacccagct
4741 ggctggtttg gaaaactgga ccaaagttca attttgaggc agatgtactg gactagaggg
4801 ccaaaccatg aagaccccac tgagacaatg ataccccatt ctcagagacc catacagctc
4861 atggcactgc ttggtgaagc ctctcttcac ggaccctctt tctacagtag aatcagtaaa
4921 ttggtcataa ctgaacttaa agaaggtggg atggactttt acgtgccaag gcaggaaccc
4981 atgttcaggt ggatgaggtt ctctgacttg agcacgtggg agggcgatcg caatctggct
5041 cccaattttg tgaatgaaga tggcgtcgag tgacgccaac ccatctgatg ggtccgcagc
5101 caacctcgta ccagaggtca acaatgaggt tatggctttg gagcccgttg tcggtgccgc
5161 tattgcggca cctgtagcgg gccaacaaaa tgtaattgac ccctggatta gaaacaattt
5221 tgtacaagcc cctggtgggg agttcacagt atcccctaga aatgctccag gtgaaatact
5281 atggagcgcg cccctaggcc ctgacctaaa tccctaccta tcccatttag ccagaatgta
5341 caatggttat gcaggtggtt ttgaagtgca ggtaattctc gcggggaacg cgttcaccgc
5401 cgggaagatc atatttgcag cagtcccacc aaattttcca actgaaggtc taagccctag
5461 ccaggtcact atgttccccc acataatagt agatgttaga caattggaac ctgtgctgat
5521 tcccttaccc gatgttagga ataatttcta tcattacaat cagtcaaatg attccactat
5581 taggttaata gcaatgttgt acacaccact tagggctaat aatgctgggg atgatgtttt
5641 cacagtttcg tgccgagttc tcacgagacc atcccccgat tttgatttca tatttttagt
5701 accacccaca gttgagtcaa gaactaaacc attctctgtc ccagttttaa ctgttgagga
5761 gatgaccaat tcaagattcc ccatcccttt ggaaaagttg tttacaggtc ccagcagtgc
5821 atttgtcgtt caaccacaaa acggcagatg cacaactgat ggcgtgcttc taggcaccac
5881 ccaactttct cctgtcaaca tctgcacctt cagaggggat gtcactcaca tcacaggtag
5941 tcacaactac actatgaatt tggcttctca aaattggaac aactatgatc caacagaaga
6001 aatcccagcc cctctaggaa ctccagattt tgtggggaag attcaaggca tgctcaccca
6061 gaccacaagg acagatggtt caacacgcgg tcacaaagct acagtgtaca ctgggagcgc
6121 cgactttgct ccaaaactgg gtagagttca atttgaaact gacacaaacc atgattttga
6181 agccaatcaa aacacaaagt tcaccccagt cggtgtcatt caagatggta gcaccaccca
6241 tcgaaacgaa ccccagcagt gggtgctccc aagttactca ggcagaaata ctcacaatgt
6301 acatttggcc cccgctgtag cccccacctt tccgggtgag caacttctct tcttcagatc
6361 caccatgccc ggatgcagcg gataccccaa catggatttg gactgtctgc tcccccagga
6421 atgggtgcag tacttctacc aagaggcagc cccagcacaa tctgatgtgg ctctgctaag
6481 atttgtgaat ccagacacgg gtagggtttt gtttgagtgc aagcttcaca aatcaggcta
6541 tgttacagtg gctcacactg gccaacatga tttggttatc ccccccaatg gttactttag
6601 gtttgattcc tgggtcaacc agttctacac gcttgccccc atgggaaatg gaacggggcg
6661 tagacgtgca gtgtaatggc tggagctttc tttgctggat tggcatctga tgtccttggc
6721 tctggacttg gttcccttat caatgctggg gctggggcca tcaaccaaaa ggttgagttt
6781 gaaaataaca gaaaattgca acaagcatcc tttcaattta gcagtaattt gcaacaggct
6841 tcctttcaac atgataaaga gatgctccaa gcacaaattg aggccaccaa aaagctacaa
6901 caggaaatga tgagagttaa gcaggcaatg ctcctagagg gtgggttctc tgagacagat
6961 gcagcccgcg gggcaattaa cgcccccatg acaaaggttt tggactggag cgggacaagg
7021 tactgggctc cagatgctag aattacaaca tacaattcag gccacttttc cacccctcaa
7081 ccatcggggg cactgccagg aagagctaat cttagggatg ctgtccctgc tcggggaccc
7141 tccaccaaat cttctaactc ttctgctgcc acttctgtgt actcaaatca aactacttca
7201 acgatacttg gttctacagc tggttctgga accagtgtct cgagcctccc gtcgactgca
7261 aggaccagga gctgggttga ggatcaaaat aggagtctgt cacctttcat gaggggggcc
7321 cacaacatat catttgtcac cccaccatct agcagatcct ctagccaagg cacagtctca
7381 accgtgccta aagaaatttt ggactcctgg actggcgctt tcaacacgcg caggcagcct
7441 ctcttcgctc acattcgtaa gcgaggggag tcacgggtgt aatgtgaaaa gacaaaacag
7501 attatctttc tttttctttt ctttagtgtc t
//