Typing tool
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Typing tool
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Complete norovirus genomes
| PP267271 | GII.6 | |
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| GII.P7 |
ORF1: 1..5092
ORF2: 5073..6725
ORF3: 6725..7504
LOCUS PP267271 7523 bp RNA linear VRL 09-FEB-2024
DEFINITION Norovirus GII isolate 2106072 nonstructural polyprotein (ORF1)
gene, partial cds; and VP1 (ORF2) and VP2 (ORF3) genes, complete
cds.
ACCESSION PP267271
VERSION PP267271.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7523)
AUTHORS Tao,L., Wang,X. and Ding,J.
TITLE Direct Submission
JOURNAL Submitted (04-FEB-2024) Department of Microbiology Laboratary,
Nanjing Municipal Center for Disease Control and Prevention
affiliated to Nanjing Medical University, Zizhulin No. 2, Nanjing,
Jiangsu 210003, China
COMMENT ##Assembly-Data-START##
Assembly Method :: BWA v. 0.7.17-r1188
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7523
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="2106072"
/isolation_source="stool sample"
/host="Homo sapiens"
/db_xref="taxon:122929"
/country="China"
/collection_date="07-Jun-2021"
/note="genotype: GII.6[P7]"
gene <1..5092
/gene="ORF1"
CDS <1..5092
/gene="ORF1"
/codon_start=2
/product="nonstructural polyprotein"
/protein_id="WVN22301.1"
/translation="KMASNDATAALGSQNSVNDSINTTPSNKEEAGAFSNIKVGFKKM
LGAVPKGTKAPSGDQHCPTVKIGPKTLTVPPEPPNGEDTVQFDAKSETVIGIPDLTTV
QNEHENTPYTVPPLSEREHRPATEPLPGTILEMWDGEFYHYSVYVSGGKALGVHKPPA
AISLATIELTPISLYWRPVYTPNYLVCPDTLKGLAGEKFPYTAFSNNCYNFCCWVLEL
NDTWLSRRSISRTTGFFKPYQSWNRKPLPTVDDGKIKKVANAILCALGSLFSKPIKDL
LGKLKPLNLLHLLASCDWTFAGIVETVILMAELFNVFWTPPDVSNFIASLIGDFELQG
PEDLAVELVPVVMGGIGMVLGFTAEKIGRMLSSAASTLRACKDLGNYALDILKLVMKW
FFPKKEEKAEMETLRAIEDAVLDMEAIGNNHLTTLLKDKDSLTAFMKTLDLEEEKARK
LSTKSSSPDIVGTINAILARIAAARSLLHKAKEEMFSRIRPVVVMISGRPGIGKTHMA
RHLAKNIANTMSGDQRVGLVPRNGVDHWDAYRGERVVLWDDYGMGNPVKDALTLQELA
DTCPVTLNCDRIENKGKMFDSDVIIITTNLVNPAPLDYVNFEACSRRIDFLVYAESPE
IEKVKRDFPGQPDMWKDYFKQDFSHIKLTLAPQGGFDKNGNTPHGKGTMRSLTQGSLT
ARVAGLVHERKDEFQLQGDALQTYNFDTNRVSAFRKLAADNKYGIMETMRVGAALKNV
RTLEDLKVALRDVKFNECEIIYRNSKYRVSSNGKGSVSVDKVEDHTSHTANEVGSALL
RLRQARARYYVSCFQDLVYTLIQVAGASFVVNRISKRFCWERWVKPTETQEASEPEKE
VAQGRWEIEPKDTEPEGKKGKNKKGRGKKHTAFSSKGLSDEEYDEFKRIREERNGKYS
IEEYLQDRDRYYEEVAVARATEEDFCEEEEAKIRQRIFRPTRKQRKEERGVLGLVTGS
DIRKRRPDDFQPKGNLWADDTRSVDYNERLDFEAPPSVWSRIVPLGTGWGFWVSSNLL
ITTTHVLPKGLKELFGVEVKQIQIHKSGEFCRFRFPRPIRPDVTGLVLEEGAPEGTVC
SILVKRPTGEMIPLAVRMGTHASMKIQGRTVGGQMGMLLTGANAKNMDLGTGPGDCGC
PYIYKRGNDIVVAGVHTAAARGGNTVICATQGQDGEAVLEGNEDLGTYCGAPILGPGK
APKLSTKTKFWRSSPDALPPGTYEPAYLGGKDPRVEKGPSLQQVMRDQLKPFTEPRGK
PPRPAVLEEAKKTVMNVLEQTIDPAKPWTYSQACASLDKTTSSGSPHHVRKNDHWNGE
SFTGPLADQASKANLMYEQAKHVQPVYTAALKDELVKTDKIYKKIKKRLLWGSDLGTM
IRCARAFGGLMDSMKASCIALPCRVGMNMNEDGPIIFDKHSKYRYHYDADYSRWDSTQ
QRSILSAAMEVMVRFSAEPELAQVVAEDLLAPSQLDVGDFVISVQEGLPSGVPCTSQW
NSIAHWILTLSAMAEVSGLSPDVVQAHSCFSFYGDDEIVSTDINLDPMKLTQKLREYG
LVPTRPDKTEGPLVITEDLTGLTFLRRSIARDPAGWFGKLDQDSILRQLYWTRGPNHE
NPYESMVPHSQRATQLMALLGEASLHGPQFYKKVSKMVINEIKSGGLEFYVPRQEAMF
RWMRFSDLSTWEGDRNLAPEGVNEDGVE"
mat_peptide <1..1000
/gene="ORF1"
/product="p48"
mat_peptide 1001..2098
/gene="ORF1"
/product="NTPase"
mat_peptide 2099..2617
/gene="ORF1"
/product="p22"
mat_peptide 2618..3016
/gene="ORF1"
/product="VPg"
mat_peptide 3017..3559
/gene="ORF1"
/product="Pro"
mat_peptide 3560..5089
/gene="ORF1"
/product="RdRp"
gene 5073..6725
/gene="ORF2"
CDS 5073..6725
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="WVN22302.1"
/translation="MKMASNDAAPSNDGAANLVPEANNEVMALEPVVGASIAAPVVGQ
QNIIDPWIRENFVQAPQGEFTVSPRNSPGEMLLNLELGPELNPYLSHLSRMYNGYAGG
MQVQVVLAGNAFTAGKIIFAAVPPHFPVDNISAAQITMCPHVIVDVRQLEPVLLPLPD
IRNRFFHYNQENTPRMRLVAMLYTPLRANSGEDVFTVSCRVLTRPAPDFEFTFLVPPT
VESKTKPFTLPILTLGELSNSRFPAAIDMLYTDPNESIVVQPQNGRCTLDGTLQGTTQ
LVPTQICAFRGTLISQNARAADLTDSPQRARNHPLHVQVKNLDGTQYDPTDDIPAVLG
AIDFKGTVFGVASQRDVSGTQEQGHYATRAHEAHIDTTDPKYAPKLGTILIKSESPDF
TTNQPIRFTPVGMGDNNWRQWELPDYSGSLTLNMNLAPAVSPSFPGERILFFRSIVPS
AGGYGSGYIDCLIPQEWVQHFYQEAAPSQSAVALVRYVNPDTGRNIFEAKLHREGFLT
VANSGNNPIVVPPNGYFRFEAWVNQFYTLAPMGSGQGRRRAQ"
gene 6725..7504
/gene="ORF3"
CDS 6725..7504
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="WVN22303.1"
/translation="MAGAFFAGLAGDVVSNGIGSLINAGANAVNQKVEYDFNKQLQLA
SFKHDKEMLQSQVLATKQLQQEMMNIKQGMLTAGGFSPADAARGAVNAPMTKILDWNG
TRYWAPNSMKTTSYSGQFSSSPVHRSPAPLQHTAPPKSKLQSDSASVYSSPSTASSQS
THSTVLSAGTGSSRSTPTSTATSTLSRTSDWVRGQNERLGPFMDGALQTTFVTPPSSK
ASSDGTVSTVPKAVLDSWTPMFNTHRQPLFAHLRRRGESQI"
ORIGIN
1 gaagatggcg tctaacgacg ctaccgctgc ccttggcagt caaaactctg tcaatgacag
61 tatcaacacc accccttcaa acaaagaaga ggctggtgca ttctccaaca tcaaagttgg
121 atttaagaaa atgctgggtg ccgtacccaa gggtactaaa gcacccagcg gtgaccagca
181 ctgtccaaca gttaagatcg ggcccaaaac actaacagtc ccccctgaac ccccaaatgg
241 tgaagacact gtacagtttg acgcaaaatc ggaaactgta attgggatac cggacttgac
301 aacagtgcaa aatgaacatg aaaacacccc atacactgtc cctccactga gtgagaggga
361 acacagacca gccactgagc cacttcctgg cacaatattg gagatgtggg atggtgaatt
421 ttatcactac tctgtgtacg tcagcggcgg caaagctctg ggggttcaca aacctccggc
481 agctataagt ctcgcgacga tagagctcac ccccatatct ctatactgga ggcccgttta
541 cacccccaac tatctggtct gtccagacac actgaaaggt ctcgctggtg aaaagttccc
601 ctacacggcc ttcagcaaca attgctacaa cttctgttgt tgggtgcttg aactcaatga
661 cacgtggctt agcagaagaa gcatttctag aactaccggc ttcttcaaac cgtaccagtc
721 ttggaacagg aaacctctcc caacagttga tgatggaaag atcaaaaagg ttgccaacgc
781 gatcctttgt gcgctcggtt cgctgttctc aaagccaatc aaggacctgc taggcaagct
841 caaaccattg aacttactac acctgctcgc gtcgtgtgat tggacgtttg caggtatagt
901 ggagacagtc atcttaatgg cagaactctt caacgtcttt tggaccccgc cagacgtctc
961 taattttata gcctccctga taggtgattt tgaattgcag gggcctgagg acttggcggt
1021 agagcttgtt cctgtggtta tgggtggtat aggaatggtt ctcggcttca cagctgagaa
1081 gataggtcgc atgctgtcgt ccgctgcatc aacgctgcgg gcgtgtaaag acttagggaa
1141 ctatgccctt gacatactta aattggtcat gaaatggttc ttcccaaaga aagaggagaa
1201 agccgaaatg gaaaccttaa gggcgattga ggatgccgtc ctagatatgg aggccatagg
1261 taacaaccac ctcacgaccc tcctcaagga taaagacagt ctcacggcct tcatgaagac
1321 cttggatctg gaggaagaga aagcaaggaa gctatccacc aaatcatcct caccggacat
1381 cgtcggcact atcaatgcca tactggctag gatagctgcc gctagatccc tcctgcacaa
1441 agccaaagag gaaatgttta gcaggattag accggtggtt gttatgatct caggcagacc
1501 tggtattggc aaaactcata tggcgagaca tctggctaaa aacatcgcca acaccatgag
1561 tggtgaccaa agagtcgggc tcgttccgcg caacggggtc gaccactggg acgcttacag
1621 aggagagagg gtggtcttgt gggatgatta tggaatgggg aaccctgtca aagatgcttt
1681 aacactacaa gagctagctg acacatgccc agtcactctg aactgtgaca ggatcgagaa
1741 caagggaaaa atgttcgaca gcgatgtcat cataatcacg accaacctag tcaaccctgc
1801 acctctcgat tatgtgaact tcgaggcgtg ctctaggagg attgatttct tggtctatgc
1861 agagtcacca gaaattgaga aggttaagag agatttccct ggtcaacctg acatgtggaa
1921 agactatttc aaacaagact tttcccatat aaaactaacc ctagcccccc aaggcggatt
1981 tgacaagaat ggtaacaccc cgcatggtaa gggcaccatg cgatccctca cccaggggtc
2041 cctgaccgca agggttgcag gccttgttca tgagagaaag gatgagttcc agctacaagg
2101 ggatgccctc cagacgtaca actttgacac caatagggtc tctgcgttca ggaaactggc
2161 tgcagacaac aagtatggaa tcatggaaac aatgagagtg ggtgcagcgc tcaagaatgt
2221 cagaactctg gaagatctga aggtcgcctt gagagatgtg aagttcaatg agtgtgaaat
2281 aatttacagg aactctaagt accgggtctc ttccaacggc aagggctctg tttctgttga
2341 caaagttgag gaccacacgt ctcatactgc aaatgaagtg ggctcagcac tcctcagact
2401 taggcaagca agggctaggt actatgtcag ctgcttccaa gacctcgtct acactctcat
2461 acaggttgct ggggcgtcat tcgttgtcaa caggatctct aaaaggttct gctgggaaag
2521 gtgggttaaa ccaaccgaaa cccaagaagc gagtgagccc gaaaaggaag tagctcaagg
2581 tagatgggag atagagccca aggacacaga accagaaggc aagaagggta agaacaagaa
2641 ggggagaggt aagaaacaca cagccttctc cagcaaaggc ctaagtgatg aagagtatga
2701 tgagttcaag agaatcagag aagagaggaa cggaaaatac tccattgagg aatacctgca
2761 agaccgggac cgctactatg aagaagtggc agttgctcgg gcaacagaag aggacttttg
2821 tgaagaagaa gaagccaaaa taagacaaag aatcttccgc ccgacaagga agcaaaggaa
2881 agaggaaagg ggggtacttg gtttagtcac tggttcagat atcaggaaga ggagaccaga
2941 cgattttcaa ccaaaaggca acctgtgggc agatgacact aggagtgtgg actacaatga
3001 gagacttgac tttgaggctc caccaagtgt ctggtcaaga atagtcccat tgggcactgg
3061 ttggggcttc tgggtttcat caaacctcct gatcacaaca acacacgtcc tgcccaaggg
3121 gctcaaggaa ctctttgggg tcgaagtcaa acaaattcaa atccacaagt caggagagtt
3181 ctgcaggttt aggttcccaa gaccaatcag gccagatgtc acaggactcg tgctggagga
3241 aggtgctcct gaaggtactg tctgttctat actcgttaag aggcctacag gtgagatgat
3301 ccccctagca gtgaggatgg gcacgcatgc gtccatgaaa atacagggta ggaccgtcgg
3361 tggtcagatg ggaatgcttc tcacaggggc aaatgcaaag aacatggatc tcggcaccgg
3421 tcctggtgac tgcggttgtc cttacatcta taagcgtggc aacgacatag ttgtcgcggg
3481 tgtccacacc gcagcagccc ggggtggcaa cactgtcatt tgtgccactc aaggacaaga
3541 cggagaggca gtcctcgagg gaaatgaaga ccttggcacc tactgtggtg ctccaattct
3601 gggccctggt aaagcgccta aactcagcac aaaaactaaa ttttggcgct catcaccaga
3661 tgccttacct cctggtacgt atgagcctgc ttatctgggg ggtaaggatc ccagagtgga
3721 aaaggggccc tccctgcagc aagttatgag agaccagctg aaaccattca cagaacccag
3781 gggcaaacca cctagaccag cagttctaga agaggctaaa aagacagtga tgaacgttct
3841 agaacagacc attgatcctg ctaaaccatg gacttactca caagcatgtg cttcactgga
3901 caagaccact tctagtggaa gcccccacca tgtcaggaag aatgaccact ggaatgggga
3961 gtctttcact ggtcccctcg cggaccaagc atccaaagcc aacctcatgt atgaacaggc
4021 aaagcacgtg cagcccgtgt acacggccgc gctcaaagat gaacttgtta agactgataa
4081 gatctacaag aaaataaaga agagactcct atgggggtca gaccttggca cgatgatcag
4141 gtgtgccagg gcttttggcg gccttatgga cagtatgaaa gcaagttgta tagcccttcc
4201 atgcagggtg gggatgaaca tgaatgagga tggccctatc atatttgaca agcactccaa
4261 gtataggtac cactatgacg ctgactactc taggtgggac tcaacccagc aaaggagcat
4321 tctttccgcc gccatggagg tgatggtgag gttctctgct gaaccagaat tggcacaagt
4381 ggtcgcagag gatcttttag cgcctagcca gctagatgtt ggcgattttg tcatctcagt
4441 ccaggagggc ctaccatcag gagtcccgtg tacgtcgcaa tggaactcaa tagcgcactg
4501 gattctaact ctgagcgcaa tggcagaagt gtcaggtctc tcaccagacg ttgtccaagc
4561 ccactcctgt ttctcatttt atggcgacga tgagatcgtc agcactgaca tcaaccttga
4621 ccccatgaaa ttgacacaga aactcaggga gtatggtctg gtccccaccc ggcctgataa
4681 gactgaaggc cccctcgtta taactgaaga cctcaccggc ctgacattcc tgcgcagatc
4741 gattgcacgg gatccagctg gatggtttgg aaaattggat caagactcaa tcctcaggca
4801 gttgtactgg acaaggggac ccaatcacga aaacccatac gagagcatgg ttccccactc
4861 ccagcgagct actcagctca tggcccttct tggtgaggct tcattacatg gtccccagtt
4921 ttacaagaaa gttagcaaga tggtcatcaa tgaaattaag agtggtggtc tggagtttta
4981 tgtgcccaga caagaggcca tgtttaggtg gatgagattc tctgacctca gcacatggga
5041 gggcgatcgc aatcttgctc ccgagggtgt gaatgaagat ggcgtcgaat gacgccgctc
5101 catcaaatga tggtgctgcc aacctcgtac cagaggccaa caatgaggtt atggcacttg
5161 aaccggtggt gggagcttca atcgcggctc ctgttgtcgg tcagcagaat ataattgacc
5221 cctggattag agaaaatttt gttcaagcac cacagggcga gtttactgtt tcaccaagga
5281 actcgcccgg tgagatgctt ctaaatcttg aattgggccc agaacttaac ccctatttga
5341 gtcatttgtc ccgcatgtac aatgggtatg ctggtggcat gcaggttcag gtggtcctag
5401 ctgggaatgc gttcacagct gggaagatca tctttgccgc tgtgccacca cacttccctg
5461 tggacaatat tagtgcagct cagataacta tgtgccccca tgtgattgtt gatgtgagac
5521 agcttgagcc agtgcttcta cccctccccg atataagaaa taggttcttc cattacaacc
5581 aggaaaacac cccccggatg aggctcgtgg ccatgctcta cacgcctcta agggctaatt
5641 ccggagagga tgtgttcact gtgtcctgta gggttctgac tcgccccgct ccagattttg
5701 aattcacatt cttagttcca ccgactgttg aatcaaaaac aaaacccttt actctaccta
5761 ttttaaccct tggtgagttg tctaattccc gtttccctgc tgctatagat atgctttaca
5821 ctgatcccaa tgaatctata gttgttcagc cccaaaatgg tagatgcacc cttgacggca
5881 cgctgcaggg cacaacacaa ttggtcccaa cacagatttg tgcctttaga ggtactctga
5941 tcagtcagaa tgcgagagcg gccgatctaa cagattcccc ccagagagcc cgcaatcacc
6001 cgttgcacgt ccaggtcaag aacctagatg gcacacagta tgacccaaca gatgacatcc
6061 ctgcagtcct gggggctatt gacttcaaag gtacagtgtt cggagtggcg agtcagagag
6121 acgtctctgg aacacaagaa caaggccatt atgccacccg ggctcatgaa gcacacattg
6181 acacaactga tccaaagtat gcacctaaat taggcacaat tctcatcaaa tctgaatccc
6241 ctgatttcac cacaaatcag cccattaggt tcactccagt gggcatgggc gacaacaatt
6301 ggagacagtg ggaattgcct gactattctg gtagtttgac tctaaatatg aaccttgccc
6361 ctgctgtctc cccatctttc cctggtgaac gaatcctttt ctttaggtct atagtaccat
6421 cagctggagg ctacgggtct ggttatatag actgcctcat accccaggaa tgggtgcaac
6481 atttctacca ggaggcagcg ccttcacaat ctgctgttgc actggttagg tatgtcaacc
6541 ccgacactgg acgtaacatc tttgaggcca agttgcacag agaagggttc ctcaccgtgg
6601 ccaattctgg aaacaatccc attgtggttc cccctaatgg ttattttaga tttgaggctt
6661 gggttaatca attttacaca cttgccccca tgggatctgg acaggggcgt agaagagctc
6721 agtaatggct ggagccttct tcgcagggtt agcaggtgat gtcgtgtcga acggcatcgg
6781 ttccctcatt aatgcaggtg ctaacgcagt caatcaaaag gttgagtatg attttaataa
6841 gcaacttcaa ttggcatcat tcaaacatga taaggagatg ttacaatcac aggtgttggc
6901 aaccaaacaa ctgcagcagg agatgatgaa cataaagcag gggatgttga ccgctggcgg
6961 cttttctcct gcggatgctg ctagaggggc tgttaacgct ccaatgacaa aaatattgga
7021 ctggaatggc acaagatatt gggcacctaa tagcatgaaa accacaagct actcaggaca
7081 attctctagt agccctgtcc acaggtctcc tgctcccctc cagcatactg ccccaccaaa
7141 aagtaagttg caaagtgatt ctgctagtgt gtatagctcc ccttccactg cttcttcaca
7201 atcaactcat tcaacagtgt tgtctgcagg aactgggtcg tccagatcca cccccacgtc
7261 cacagcaacc tccaccctgt ctaggaccag cgactgggtt agaggacaga atgaaaggct
7321 tggcccgttt atggatggtg ctctccaaac tacctttgtc acaccaccat cgagcaaagc
7381 ttcatcagat gggacagtct cgaccgtgcc caaagctgtt ttggactcct ggactcctat
7441 gttcaacacg cataggcagc ctctcttcgc ccacttgcgt aggcgagggg agtcacagat
7501 ttagtgaaaa gagtgattag gct
//