Typing tool
|
Complete norovirus genomes
PP267270 | GII.2 | ||
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GII.P16 |
ORF1: 1..5098 ORF2: 5079..6707 ORF3: 6707..7486LOCUS PP267270 7530 bp RNA linear VRL 09-FEB-2024 DEFINITION Norovirus GII isolate 21040221 nonstructural polyprotein (ORF1) gene, partial cds; and VP1 (ORF2) and VP2 (ORF3) genes, complete cds. ACCESSION PP267270 VERSION PP267270.1 KEYWORDS . SOURCE Norovirus GII ORGANISM Norovirus GII Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 7530) AUTHORS Tao,L., Wang,X. and Ding,J. TITLE Direct Submission JOURNAL Submitted (04-FEB-2024) Department of Microbiology Laboratary, Nanjing Municipal Center for Disease Control and Prevention affiliated to Nanjing Medical University, Zizhulin No. 2, Nanjing, Jiangsu 210003, China COMMENT ##Assembly-Data-START## Assembly Method :: BWA v. 0.7.17-r1188 Sequencing Technology :: Illumina ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..7530 /organism="Norovirus GII" /mol_type="genomic RNA" /isolate="21040221" /isolation_source="stool sample" /host="Homo sapiens" /db_xref="taxon:122929" /country="China" /collection_date="02-Apr-2021" /note="genotype: GII.2[P16]" gene <1..5098 /gene="ORF1" CDS <1..5098 /gene="ORF1" /codon_start=2 /product="nonstructural polyprotein" /protein_id="WVN22298.1" /translation="KMASNDATVAVACNNNNDKEKSSGEGLFTNMSSTLKKALGARPK QPAPRDKPQKPPRPPTPELVKRIPPPPPNGEEEEEPVIRYEVKSGISGLPELTTVPQP DVANTAFSVPPLSLRENREAKEPLTGAILEMWDGEIYHYGLYVEKGLVLGVHKPPAAI SMARVELTPLSLYWRVVYTPQYLISPETLRRLNGEAFPYTAFDNNCYAFCCWVLDLND SWLSRRMIQRTTGFFRPYQEWNRKPLPTMDDSKIKKVANIFLCSLSTLFTRPIKDLIG KIKPLNILNILATCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPE DLAVELVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFF PKKEETNELAMVRAIEDAVLDLEAIENNHMTTLLKDKDSLATYMKTLDMEEEKARRLS TKSASPDIVGTINALLARIAAARSLVHRAKEELSSRIRPVVVMISGKPGIGKTHLARE VARKVASTLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRIQELADT CPLTLNCDRIENKGKVFDSEVIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVE KAKRDFPGQPDMWKDAFKPDFSHIKLQLAPQGGFDKNGNTPHGKGVMKTLTTGSLIAR ASGLLHERMDEFELQGPTITTFNFDRNRITAFRQLAAENKYGLVDTMKVGNQLKGVKT MEELKQAIRNVTIKRCQIIYGGSTYDLESDGKGKVLVEKVKNTSVQTNNELAGALHHL KHARIRYYVKCVQEAVYSIIQIAGAAFVTTRIARRMNIQELWSKPQLDQNESETKEEA PKSEDDEFIISSKDIKEEGKKGKNKTGRGKKHTAFSSKGLSDEEYDEYKRIREERNGK YSIEEYLQDRDRYYEELAIAKATEEDFCEEEEIKIRQRIFRPTRKQRKEERATLGLVT GSEIRKRNPDDFKPKGKLWADDNRSVDYNEKLDFEAPPSIWSRIVSFGSGWGFWVSPS LFITSTHVIPAGITEAFGVPIKQIQIHKSGEFCRFRFPKPIRPDVTGMILEEGAPEGT VATVLIKRPTGELMPLAARMGTHATMKIQGRMVGGQMGMLLTGSNAKGMDLGTTPGDC GCPYIYKRGNDYIVIGVHTAAARGGNTVICATQGSEGEATLEGGDDKGTYCGAPILGP GGAPKLSTKTKFWRSSNTPLPPGTYEPAYLGGRDPRVKGGPSLQQVMRDQLKPFTEPR GKPPRPSVLEAAKQTIINVLEQTLDPPQKWTYAQACASLDKTTSSGYPHHVRKNEFWN GETFTGKLADQASKANLMFEEGKHMTPVYTAALKDELVKTEKIYGKIKKRLLWGSDLS TMIRCARSFGGLMDEMKAHCISLPVRVGMNMNEDGPIIFEKHSRYKYHYDADYSRWDS TQQRAVLAAALEIMVRFSAEPQLAQIVAEDLLAPSVVDVGDFKITINEGLPSGVPCTS QWNSIAHWLLTLCALSEVTKLSPDIIQANSMFSFYGDDEIVSTDIKLDPEQLTAKLKE YGLKPTRPDKTEGPLIISEDLNGLTFLRRTVTRDPAGWFGKLDQSSILRQMYWTRGPN HEDPNETMIPHSQRPIQLMALLGEASLHGPSFYSKISKLVITELKEGGMDFYVPRQEP MFRWMRFSDLSTWEGDRNLAPNFVNEDGVE" mat_peptide <1..994 /gene="ORF1" /product="p48" mat_peptide 995..2092 /gene="ORF1" /product="NTPase" mat_peptide 2093..2623 /gene="ORF1" /product="p22" mat_peptide 2624..3022 /gene="ORF1" /product="VPg" mat_peptide 3023..3565 /gene="ORF1" /product="Pro" mat_peptide 3566..5095 /gene="ORF1" /product="RdRp" gene 5079..6707 /gene="ORF2" CDS 5079..6707 /gene="ORF2" /note="major capsid protein" /codon_start=1 /product="VP1" /protein_id="WVN22299.1" /translation="MKMASNDAAPSTDGAAGLVPESNNEVMALEPVAGAALAAPVTGQ TNIIDPWIRANFVQAPNGEFTVSPRNAPGEVLLNLELGPELNPYLAHLARMYNGYAGG MEVQVMLAGNAFTAGKLVFAAVPPHFPVENLSPQQITMFPHVIIDVRTLEPVLLPLPD VRNNFFHYNQKDDPKMRIVAMLYTPLRSNGSGDDVFTVSCRVLTRPSPDFDFTYLVPP TVESKTKPFTLPILTLGELSNSRFPVSIDQMYTSPNEIISVQCQNGRCTLDGELQGTT QLQVSGICAFKGEVTAHLHDNDHLYNVTITNLNGSPFDPSEDIPAPLGVPDFQGRVFG IISQRDKHNSPGHNEPANRGHDAVVPTYTAQYTPKLGQIQIGTWQTDDLTVNQPVKFT PVGLNDIEHFNQWVVPRYAGALNLNTNLAPSVAPVFPGERLLFFRSYIPLKGGYGNPA IDCLLPQEWVQHFYQEAAPSMSEVALVRYINPDTGRALFEAKLHRAGFMTVSSNTSAP VVVPANGYFRFDSWVNQFYSLAPMGTGNGRRRVQ" gene 6707..7486 /gene="ORF3" CDS 6707..7486 /gene="ORF3" /note="minor structural protein; small basic protein" /codon_start=1 /product="VP2" /protein_id="WVN22300.1" /translation="MAGAFVAGLAGDVLSNGLSSLINAGANAINQRAEFDFNQKLQQN SFNHDKEMLQAQIQATKQLQADMMAIKQGVLTAGGFSPADAARGAVNAPMTQALDWNG TRYWAPNSMRTTSYSGKFTSTAPVRQADFQHTQSRPSSGSSVSSFATQSSRPTLTTTT GSSHGTASSNSTRSTSLSQSTVSRATSRTGEWVRDQNRNLEPYMHGALQTAFVTPPSS RASDGTVSTVPKGVLDSWTPAFNTRRQPLFAHLRKRGESQA" ORIGIN 1 gaagatggcg tctaacgacg ctaccgttgc cgttgcttgc aacaacaaca acgacaaaga 61 aaaatcttca ggtgaaggct tattcacaaa tatgtcttcc accttaaaga aagccctcgg 121 ggctaggccc aaacagcctg ccccgagaga caaaccacaa aagcccccaa gaccaccaac 181 tcccgagttg gtcaagagga taccccctcc tccacctaac ggcgaagaag aagaagaacc 241 agtcattagg tatgaggtta agagcgggat ctctggcctg cccgagctca caacagtccc 301 ccaaccggac gtggccaaca cagcattcag tgttccacca ctgagtttga gagaaaatag 361 ggaggccaag gagccgctaa caggggcaat attagagatg tgggatggag agatatacca 421 ctatggcctg tatgtggaga aaggcttagt gttgggtgtg cacaaaccac ctgcagccat 481 aagcatggca agagtggagc tgacgccgtt gtcattgtac tggcgtgtgg tgtacactcc 541 ccaatacctc atctcccctg aaaccctcag gaggctcaat ggagaggcat tcccttacac 601 cgcctttgac aacaactgct atgccttttg ctgctgggtg ttagacctca atgactcatg 661 gcttagcagg aggatgatac aaaggacaac gggcttcttc agaccttacc aagagtggaa 721 cagaaaaccc ctgcctacca tggatgactc caaaattaag aaggtagcaa atatattcct 781 atgttcattg tccacgttat tcaccagacc cataaaagac ctcataggaa aaatcaaacc 841 attgaacata ttgaatatcc tggcaacgtg tgactggact tttgccggaa tagtggagtc 901 tctgatatta cttgctgaac tcttcggagt tttctggaca cccccagatg tgtctgctat 961 gatcgctccc ttactcgggg actacgagtt gcaagggcca gaagacctcg ccgttgaact 1021 cgtgcctgtg gtaatggggg ggattggttt ggtgttggga ttcaccaaag agaaaattgg 1081 caaaatgttg tcctcagcag catcaacact cagggcttgc aaagatcttg gtgcctatgg 1141 cttggagata ctcaaattgg tcatgaagtg gttcttccca aagaaagagg agaccaatga 1201 gctagctatg gtgagggcca tagaggatgc tgtattagac cttgaggcaa tagaaaataa 1261 ccacatgaca accctgttga aagacaaaga cagtttagca acatacatga aaacactgga 1321 catggaggag gagaaagcca ggaggttgtc cacaaaatct gcatcccctg acatagttgg 1381 gacaatcaac gccctgctgg ctcggatagc agcggccagg tcattagtcc acagggccaa 1441 ggaagagcta tctagtagga taaggccagt agttgttatg atatctggca agccaggaat 1501 aggcaaaact catctggcca gggaggtggc aagaaaggtg gcatccactc tcacaggaga 1561 tcaaagagtc ggactcatac cacgaaacgg tgtggaccat tgggatgcat acaaaggtga 1621 gagagtcgtg ctgtgggacg actatggcat gagtaaccct attcatgatg ctcttcgcat 1681 acaagaattg gctgatacgt gtcccctcac cttaaattgt gacagaattg aaaataaggg 1741 aaaagttttt gacagtgaag tcataataat tacaacaaac cttgccaatc cggctccact 1801 tgattatgtc aattttgagg cctgttccag gagaattgat ttcctggtgt acgctgaggc 1861 accagaagta gaaaaggcaa aacgggactt tcctggtcag ccagatatgt ggaaggacgc 1921 cttcaagccg gacttttcac acatcaagct acagcttgca ccccagggcg gctttgacaa 1981 gaatggcaac accccacatg ggaaaggagt gatgaagacc ctcactaccg gttctctgat 2041 tgcccgtgca tcaggcctgc tgcatgagag gatggatgaa tttgaactcc aaggccccac 2101 aatcaccacc tttaatttcg accgaaacag aatcacggca ttcagacaat tggctgcaga 2161 aaacaagtat ggattggtgg ataccatgaa agttggcaat caattaaaag gagtgaaaac 2221 catggaagaa ctcaaacaag caatcaggaa tgtgaccatc aagaggtgcc agatcatcta 2281 cggtggttcc acgtatgacc ttgaatctga tggcaagggc aaagttttgg tggaaaaggt 2341 caagaacacc tctgtacaga ccaataacga gttggctggg gccctgcacc atctcaaaca 2401 tgcccgaatt aggtactatg tcaaatgtgt gcaagaagca gtctattcta tcatacaaat 2461 tgccggcgct gcgtttgtca ccacgcgcat cgcacgccgc atgaatatac aagaactttg 2521 gtcgaagcca caactagatc aaaatgaatc agagactaag gaagaggccc ccaagtcaga 2581 agatgacgag ttcatcatat cttctaagga cattaaggag gaaggaaaga agggcaaaaa 2641 caaaactggc cgtggcaaga aacacactgc attctccagc aagggcctga gcgatgagga 2701 gtatgacgag tacaagagga taagagaaga gagaaatggg aagtactcta tagaggagta 2761 tcttcaagac agagacaggt actatgagga gctcgccatt gccaaggcca cggaagaaga 2821 cttctgtgaa gaggaggaga tcaaaatccg tcagagaatt ttccgtccca ccaggaaaca 2881 aagaaaggaa gagagggcca cattagggct agtaacaggt tcagaaatca gaaaaagaaa 2941 ccctgatgac ttcaaaccca aagggaagct gtgggccgat gacaacagga gtgttgacta 3001 caatgagaaa ctggactttg aggccccccc aagcatatgg tctaggattg tgagctttgg 3061 ctctggctgg ggcttctggg tgtcaccaag ccttttcata acatcaactc atgtaatccc 3121 cgcaggcata acagaagcat ttggagtccc catcaaacaa attcagatcc acaaatcagg 3181 cgaattttgc cgattcagat tcccaaaacc aattagacca gatgtgacag gaatgatctt 3241 ggaagaaggt gcgcctgagg gcaccgtggc aactgtgctc atcaaacgcc ccaccggaga 3301 gctcatgcct cttgcagcca gaatgggaac acacgcaacc atgaaaattc aaggccgcat 3361 ggttggcgga cagatgggta tgttgctcac tggatcaaat gctaaaggaa tggacttggg 3421 aacaactcct ggtgactgtg gctgtcctta catctataaa aggggcaatg actatatagt 3481 cattggggtg cacactgcag cagcccgtgg tggaaacact gtcatctgtg ccacacaggg 3541 aagtgagggt gaggcaactc ttgagggtgg agatgacaaa ggaacgtact gtggggcacc 3601 cattctaggc cctgggggtg caccaaaatt gagcaccaaa accaaatttt ggaggtcatc 3661 gaacacgccc ctcccaccag ggacatatga gcctgcctac ctcggtggcc gtgacccgcg 3721 tgttaagggt gggccttccc tgcagcaggt gatgagagac cagttgaagc catttactga 3781 acccaggggt aaacctccaa gaccaagtgt attggaagca gccaaacaaa ccatcatcaa 3841 tgtcctcgaa caaaccctgg accctccaca aaaatggaca tacgcacagg cgtgcgcctc 3901 acttgacaaa accacttcca gcgggtaccc ccatcacgtc cgaaagaatg aattctggaa 3961 tggtgagacc ttcactggta aactggcaga ccaagcatca aaagcaaacc taatgtttga 4021 ggaagggaaa cacatgacac cagtgtacac agcagcactc aaggacgagc tagtcaagac 4081 tgagaaaatt tatggaaaga tcaagaagag actgctctgg ggctctgact tgtccaccat 4141 gatccggtgt gctaggtcat ttggtgggct tatggacgag atgaaggcac actgcatatc 4201 actcccagtc cgagttggca tgaatatgaa tgaagatggc ccaataatat ttgagaaaca 4261 ttccagatac aaatatcact atgatgcaga ctactctcgt tgggattcaa cacaacagag 4321 ggcagttcta gcagcagcct tggaaatcat ggtcagattc tctgcagaac cacaattggc 4381 acaaatagtc gctgaggatc tgctggcccc tagtgtagta gatgtaggag actttaaaat 4441 cacaataaat gaagggctcc cttctggtgt gccatgcact tctcaatgga actccatcgc 4501 acactggctg ctaactctct gtgccttgtc tgaagtcacc aaactatccc ctgacattat 4561 acaggcaaat tccatgttct cattttacgg tgatgacgag attgtcagta ccgacataaa 4621 attggaccct gaacagttaa ccgccaaatt gaaggagtac ggcctgaaac caacccgccc 4681 agacaaaacc gagggacccc tgattatcag tgaagatttg aacggtctca ctttcctccg 4741 aaggacggtg actcgtgacc cagctggctg gtttggaaaa ctggaccaaa gctcaatttt 4801 gaggcagatg tactggacta gaggaccaaa tcatgaagac cccaatgaga caatgatacc 4861 ccattcccaa aggcccatac agctcatggc actgcttggt gaagcctctc ttcacggacc 4921 ctctttctac agtaaaatca gtaaattggt cataactgaa ctcaaagaag gtgggatgga 4981 cttttacgtg ccaaggcagg aacccatgtt caggtggatg aggttttctg acttgagcac 5041 gtgggagggc gatcgcaatc tggctcccaa ttttgtgaat gaagatggcg tcgaatgacg 5101 ccgctccatc tactgatggt gcagccggcc tcgtgccaga aagtaacaat gaggtcatgg 5161 ctcttgaacc cgtggctggt gccgccttgg cagccccggt caccggtcaa acaaatatta 5221 tagacccttg gattagagca aattttgtcc aggcccccaa tggtgaattt acagtctctc 5281 cccggaatgc ccctggtgaa gtgctactga atctagagtt gggtccagaa ttaaatcctt 5341 atctggcaca tttagcaaga atgtacaatg ggtatgccgg tgggatggag gtgcaggtca 5401 tgttggctgg gaacgcgttc acagccggca agttggtctt cgccgccgtg ccaccccact 5461 tcccggttga aaaccttagc ccacagcaaa tcaccatgtt ccctcatgtg atcatagatg 5521 tgagaacctt ggaacctgtt ttattaccac tccctgatgt tagaaataac ttcttccatt 5581 ataaccagaa agatgatccc aagatgagaa ttgtggctat gctttacacc cccctcaggt 5641 ctaatggttc aggtgatgat gtgtttacag tctcttgtag agtgttgact agaccttctc 5701 ctgactttga cttcacatac ctggtgccac caacagtgga gtctaagaca aagccattca 5761 ccctcccaat cctcacactt ggggaacttt ccaattctag gttcccagtg tccatagacc 5821 agatgtacac cagccctaat gaaattatat cagtgcagtg tcaaaatggt aggtgcacac 5881 tggacgggga gctccaaggg acaacacaac tccaagtcag tggcatttgt gctttcaaag 5941 gtgaagtaac cgcccacttg catgacaatg atcacctata taatgttact atcacaaact 6001 tgaatgggtc cccttttgat ccctccgagg atatccctgc ccctttgggt gtgcctgact 6061 tccagggaag ggtttttggt atcatctccc aaagagataa acacaatagt cctggacata 6121 atgaaccagc aaacagggga cacgacgctg tggtccctac ttacacagca cagtacactc 6181 caaaacttgg acaaattcaa attggcacat ggcaaactga cgaccttaca gtcaaccaac 6241 cagtcaaatt caccccagtt ggactcaatg acattgaaca ctttaaccaa tgggtggtcc 6301 ctaggtatgc tggtgcccta aacctcaata caaaccttgc cccctctgtt gctccagtat 6361 ttccaggaga gcgtctgctc ttcttcagat catacattcc cctcaagggc ggttatggaa 6421 acccagccat tgattgccta ctaccacaag agtgggtgca gcacttctat caggaagcag 6481 ccccttcaat gagtgaggtg gccctcgtca gatacatcaa cccggacact ggtcgggcac 6541 tgtttgaggc caagctccac agagctggtt tcatgacagt ctcgagcaac accagtgccc 6601 cggtggttgt gcctgccaac gggtacttca gatttgattc ttgggtgaac caattttatt 6661 ctctcgcccc catgggaact gggaatgggc gtagaagggt tcaataatgg ctggagcttt 6721 tgtagctggt cttgcagggg acgtgctcag caatgggctt agttcattaa tcaatgcagg 6781 tgctaatgca ataaatcaga gggcagaatt tgattttaat caaaaattgc agcaaaattc 6841 ttttaatcat gataaggaga tgttgcaggc tcagattcag gcaactaagc agctgcaggc 6901 agacatgatg gctataaaac aaggggtctt gaccgctggc ggcttttccc ctgctgatgc 6961 agccagaggt gctgtgaacg cgcccatgac acaggcgctg gattggaatg gcacaaggta 7021 ttgggcacca aattctatga ggaccacatc ttattctgga aaattcacat caaccgcccc 7081 agtgaggcag gctgacttcc agcacaccca aagccggcct tcgagtggtt cctctgtgtc 7141 ttcctttgcc actcagtctt caaggccaac tctgaccaca accactggtt cctcacatgg 7201 cacagcctca tcaaattcaa ctcgcagcac aagcctctcc caatcaacgg tctccagagc 7261 tacatctagg actggtgagt gggttagaga ccaaaataga aatttggaac cctacatgca 7321 tggtgcctta cagacagcct ttgtcacccc accttccagc agggcatctg acgggacagt 7381 ctcaaccgtc cctaaaggtg ttttggactc ctggacacct gcgtttaaca cccgcaggca 7441 gccgcttttt gcacacctcc gtaagagggg ggagtcacaa gcttagtgaa aaggtgaaaa 7501 tttatttagg actaattgat tttacctttt //