Typing tool
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Typing tool
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Complete norovirus genomes
| PP267269 | GII.4 Sydney | |
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| GII.P16 |
ORF1: 1..5095
ORF2: 5076..6698
ORF3: 6698..7504
LOCUS PP267269 7555 bp RNA linear VRL 09-FEB-2024
DEFINITION Norovirus GII isolate 2012251 nonstructural polyprotein (ORF1)
gene, partial cds; and VP1 (ORF2) and VP2 (ORF3) genes, complete
cds.
ACCESSION PP267269
VERSION PP267269.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7555)
AUTHORS Tao,L., Wang,X. and Ding,J.
TITLE Direct Submission
JOURNAL Submitted (04-FEB-2024) Department of Microbiology Laboratary,
Nanjing Municipal Center for Disease Control and Prevention
affiliated to Nanjing Medical University, Zizhulin No. 2, Nanjing,
Jiangsu 210003, China
COMMENT ##Assembly-Data-START##
Assembly Method :: BWA v. 0.7.17-r1188
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7555
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="2012251"
/isolation_source="stool sample"
/host="Homo sapiens"
/db_xref="taxon:122929"
/country="China"
/collection_date="25-Dec-2020"
/note="genotype: GII.4[P16]"
gene <1..5095
/gene="ORF1"
CDS <1..5095
/gene="ORF1"
/codon_start=2
/product="nonstructural polyprotein"
/protein_id="WVN22295.1"
/translation="MASNDATVAVACNNNNDKEKSSGEGLFTNMSSTLKKALGARPKQ
PAPRDKPQKPPRPPTPELVKRIPPPPPNGEEEEEPVIRYEVKSGISGLPELTTVPQPD
VANTAFSVPPLSLRENREAKEPLTGAILEMWDGEIYHYGLYVEKGLVLGVHKPPAAIS
MARVELTPLSLYWRVVYTPQYLISPETLRRLNGEAFPYTAFDNNCYAFCCWVLDLNDS
WLSRRMVQRTTGFFRPYQEWNRKPLPTMDDSKIKKVANIFLCSLSTLFTRPIKDLIGK
IKPLNILNILATCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPED
LAVELVPVVMGGIGLVLGFTKERIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFP
KKEEANELAMVRAIEDAVLDLEAIENNHMTTLLKDKDSLATYMKTLDMEEEKARRLST
KSASPDIVGTINALLARIAAARSLVHRAKEELSSRIRPVVVMISGKPGIGKTHLAREV
ARKVASTLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRIQELADTC
PLTLNCDRIENKGKVFDSEVIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEK
AKRDFPGQPDMWKDAFKPDFSHIKLQLAPQGGFDKNGNTPHGKGVMKTLTTGSLIARA
SGLLHERMDEFELQGPTTTTFNFDRNRITAFRQLAAENKYGLVDTMKVGNQLKGVKTM
EELKQAIRNVTIKRCRIIYGGSTYDLESDGKGKVLVEKVKNTSIQTNNELAGALHHLK
HARIRYYVKCVQEAVYSIIQIAGAAFVTTRIARRMNIQELWSKPQLDQNESETKEEAP
KSEDDEFVISSKDIKEEGKKGKNKTGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKY
SIEEYLQDRDRYYEELAIAKATEEDFCEEEEIKIRQRIFRPTRKQRKEERATLGLVTG
SEIRRRNPDDFKPKGKLWADDNRSVDYNEKLDFEAPPSVWSRIVSFGSGWGFWVSPSL
FITSTHVIPAGITEAFGVPIKQIQIHKSGEFCRFRFPKPIRPDVTGMILEEGAPEGTV
ASVLIKRPTGELMPLAARMGTHATMKIQGRMVGGQMGMLLTGSNAKGMDLGTTPGDCG
CPYIYKRGNDYIVIGVHTAAARGGNTVICATQGSEGEATLEGGDDKGTYCGAPILGPG
GAPKLSTKTKFWRSSNTPLPPGTYEPAYLGGRDPRVRGGPSLQQVMRDQLKPFTEPRG
KPPRPSVLEAAKQTIINVLEQTLDPPQKWTYAQACASLDKTTSSGHPHHARKNEFWNG
ETFTGKLADQASKANLMFEEGKHMTPVYTAALKDELVKTEKIYGKIKKRLLWGSDLST
MIRCARSFGGLMDEMKAHCISLPVRVGMNMNEDGPIIFEKHSRYKYHYDADYSRWDST
QQRAVLAAALEIMVRFSAEPQLAQIVAEDLLAPSVVDVGDFKIAINEGLPSGVPCTSQ
WNSITHWLLTLCALSEVTKLSPDIIQANSMFSFYGDDEIVSTDIKLDPEQLTAKLKEY
GLKPTRPDKTEGPLIISEDLNGLTFLRRTVTRDPAGWFGKLDQSSILRQMYWTRGPNH
EDPNETMIPHSQRPIQLMALLGEASLHGPSFYSRISKLVITELKEGGMDFYVPRQEPM
FRWMRFSDLSTWEGDRNLAPNFVNEDGVE"
mat_peptide <1..991
/gene="ORF1"
/product="p48"
mat_peptide 992..2089
/gene="ORF1"
/product="NTPase"
mat_peptide 2090..2620
/gene="ORF1"
/product="p22"
mat_peptide 2621..3019
/gene="ORF1"
/product="VPg"
mat_peptide 3020..3562
/gene="ORF1"
/product="Pro"
mat_peptide 3563..5092
/gene="ORF1"
/product="RdRp"
gene 5076..6698
/gene="ORF2"
CDS 5076..6698
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="WVN22296.1"
/translation="MKMASSDANPSDGSAANLVPEVNNEVMALEPVVGAAIAAPVAGQ
QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG
FEVQVILAGNAFTAGKIIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD
VRNNFYHYNQSNDSTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP
TVESRTKPFSVPVLTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT
QLSPVNICTFRGDVTHITSSHNYTMNLASQNWNNYDPTEEIPAPLGTPDFVGKIQGML
TQTTRTDGSTRGHKATVYTGSADFAPKLGRVQFETDTNHDFEANQNTKFTPVGVIQDG
STTHRNEPQQWVLPSYSGRNTHNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD
CLLPQEWVQYFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV
IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAV"
gene 6698..7504
/gene="ORF3"
CDS 6698..7504
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="WVN22297.1"
/translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA
SFQFSSNLQQASFQHDKEMLQAQIEATKKLQQEMMRVKQAMLLEGGFSETDAARGAIN
APMTKALDWSGTRYWAPDARITTHNSGHFSTPQPSGALPGRASLRDAVPARGPSTKSS
NSSAATSVYSNQTTSTRLGSTAGSGTSVSSLPSTARTRSWVEDQNRNLSPFMRGAHNI
SFVTPPSSRSSSQGTVSTVPKEILDSWTGAFNTRRQPLFAHIRKRGESRA"
ORIGIN
1 gatggcgtct aacgacgcta ccgttgccgt tgcttgcaac aacaacaacg acaaggaaaa
61 atcttcaggt gaaggcttat tcacaaatat gtcttccacc ttaaagaaag ccctcggggc
121 caggcccaaa cagcctgccc cgagagataa accacaaaag cccccaagac caccaactcc
181 cgagttggtc aagaggatac cccctcctcc acctaatggc gaagaagaag aagaaccagt
241 cattaggtat gaggttaaga gtgggatctc tggcctgccc gagctcacaa cagttcccca
301 accggacgtg gccaacacag catttagtgt tccaccactg agcttgagag aaaacaggga
361 ggccaaggaa ccgctaacag gggcaatact agagatgtgg gatggagaga tataccacta
421 tggcctgtac gtggagaagg gcttagtgtt gggtgtgcac aaaccacctg cagctataag
481 catggcaaga gtggagttga cgccgctgtc attgtactgg cgtgtggtgt acactcccca
541 atacctcatc tcccctgaaa ctctcaggag gctcaacgga gaggcgtttc cttacaccgc
601 tttcgacaac aactgctatg ccttttgctg ctgggtgtta gacctcaatg actcatggct
661 tagcaggagg atggtgcaaa gaacaacggg cttcttcagg ccttaccaag agtggaatag
721 aaaacccttg cctactatgg atgactccaa aataaagaag gtagcaaata tattcctatg
781 ttcattgtcc acattattca ccagacccat aaaagacctc ataggaaaaa tcaaaccact
841 aaacatattg aacatcttgg caacgtgtga ctggacgttt gccggaatag tggagtctct
901 gatattgctt gccgagctct tcggagtttt ctggacaccc ccagatgtgt ctgctatgat
961 cgctccctta ctcggggact acgagttaca agggccagaa gacctcgccg ttgaactcgt
1021 acctgtggta atgggaggga ttggtttggt gttgggattc accaaagaga gaatcggtaa
1081 aatgttgtcc tcagcagcat caacactcag ggcttgtaaa gatcttggtg cctatggctt
1141 agagatactc aaattggtca tgaagtggtt cttcccaaag aaagaggagg ccaatgagct
1201 agccatggtg agggccatag aggatgccgt gctagatctt gaggcaatag agaataacca
1261 catgacaacc ctgttgaaag acaaagacag tttagcaaca tacatgaaaa cactggacat
1321 ggaggaggag aaagccagaa ggttatccac aaaatctgca tcccccgaca tagttgggac
1381 aatcaacgcc ctgctggctc gaatagcagc cgccaggtca ttagtccaca gggccaagga
1441 agagctgtct agcaggataa gaccagtagt tgttatgata tctggcaaac caggaatagg
1501 caaaactcat ctggccaggg aggtggcaag aaaggtggca tccactctca caggggacca
1561 aagagtcgga ctcataccaa gaaacggtgt ggaccattgg gatgcataca aaggtgagag
1621 agtcgtgctg tgggacgact atggcatgag taaccccatt catgatgctc tccgcataca
1681 agaattggct gatacgtgtc cccttacctt aaattgtgac agaattgaaa ataagggaaa
1741 agtttttgac agtgaagtca taataattac aacaaacctt gccaacccag ccccactcga
1801 ttatgtcaac tttgaggcct gttccaggag aattgatttc ctggtgtacg ctgaggcacc
1861 agaagtagaa aaggcaaaac gggattttcc tggtcagcca gatatgtgga aggacgcctt
1921 caagccggac ttttcacaca tcaagctaca gcttgcacct cagggcggct ttgacaagaa
1981 tggcaacacc ccacatggga aaggagtgat gaagaccctc actaccggtt ctctgattgc
2041 ccgtgcatca ggcctactgc atgagaggat ggatgaattt gaactccaag gtcccacaac
2101 caccactttc aatttcgacc ggaatagaat cacagcattc aggcaattgg ctgcagaaaa
2161 caagtatgga ctggtggaca ccatgaaagt tggcaatcaa ctaaaaggag tgaaaaccat
2221 ggaagaactc aaacaggcaa tcagaaatgt gaccatcaag aggtgccgga tcatctacgg
2281 tggttccacg tatgaccttg aatctgatgg caagggcaaa gttttggtgg aaaaggtcaa
2341 gaacacctct atacaaacca acaacgagtt ggccggggcc ctgcaccatc ttaaacatgc
2401 ccgaatcagg tactatgtca aatgtgtgca agaagcagtc tattccatca tacaaattgc
2461 cggcgctgcg tttgtcacca cgcgcattgc acgccgcatg aacatacaag aactctggtc
2521 gaagccacaa ttagaccaaa atgaatcaga gactaaggaa gaggccccca agtcagaaga
2581 tgacgagttc gtcatatctt ctaaggatat caaggaggaa ggaaagaagg gcaaaaacaa
2641 aactggccgt ggcaagaaac acactgcatt ctccagcaag ggcttgagcg atgaggagta
2701 tgacgagtac aagaggataa gagaagagag aaacgggaag tactctatag aggaatatct
2761 tcaagacaga gacaggtact atgaggagct cgccattgcc aaggccacgg aagaagactt
2821 ctgtgaagag gaggaaatca aaatccgtca gagaattttc cgtcccacca ggaaacaaag
2881 aaaggaagag agggccacat tagggctggt aacaggttca gaaatcagaa gaagaaaccc
2941 tgatgatttc aaacccaaag ggaagctgtg ggccgatgac aacagaagtg ttgactacaa
3001 tgagaaactg gactttgagg cccccccaag cgtatggtct agaattgtga gctttggttc
3061 tggctggggc ttctgggtat caccaagcct gttcataaca tcaacccatg ttatccctgc
3121 aggcataaca gaagcatttg gagtccccat caaacaaatt cagattcaca aatcaggtga
3181 attttgccgg ttcagattcc caaaaccaat tagaccagat gtgacaggaa tgatcttgga
3241 agaaggtgcg cctgaaggca ccgtggcatc tgtgctcatc aaacgcccca ccggagagct
3301 catgcctctt gcagccagaa tgggaacaca cgcaaccatg aagattcaag gccgcatggt
3361 tggcggacag atgggtatgt tgctcactgg atcaaatgct aaaggaatgg atttgggaac
3421 aactcctggt gactgtggct gcccttacat ctataaaagg ggcaatgact atatagtcat
3481 tggggtacac actgcagcag cccgtggtgg aaacaccgtc atctgtgcca cacagggaag
3541 tgagggtgag gcaactcttg agggtggaga tgacaaagga acatactgtg gggcacccat
3601 tctaggccct gggggtgcac caaaattgag caccaaaacc aaattttgga ggtcatcgaa
3661 cacgcccctt ccaccaggga catatgagcc tgcctacctc ggtggccgtg acccgcgtgt
3721 taggggtggg ccctccttac agcaggtaat gagagaccaa ttgaagccat tcactgaacc
3781 caggggcaaa cctccaagac caagtgtttt ggaggcagcc aaacaaacca ttatcaatgt
3841 actcgaacaa accctggatc ctccacaaaa atggacatac gcacaggcgt gtgcctcact
3901 tgacaaaacc acctccagcg ggcatccaca ccacgcccga aagaatgaat tctggaatgg
3961 tgagaccttc actggtaaat tggcagacca agcatcaaaa gcaaacctaa tgtttgagga
4021 agggaaacac atgacaccag tgtatacagc agcactcaag gacgagctag tcaagactga
4081 gaaaatctat ggaaagatca agaagagact gctctggggc tctgacttgt ccaccatgat
4141 ccggtgcgct aggtcatttg gtgggctcat ggacgagatg aaggcacact gcatatcact
4201 cccagtgcga gttggcatga atatgaatga agatggccca ataatatttg agaaacattc
4261 cagatacaaa tatcactatg atgcagacta ctctcgctgg gattcaacac aacagagggc
4321 agtattagca gcagccttgg aaatcatggt cagattctcc gcagaaccac aattggcaca
4381 aatagtcgct gaggatctac tggcccctag tgtagtagat gtaggagact ttaaaatcgc
4441 aataaatgaa gggctcccat ctggtgtgcc atgcacttct caatggaact ccataacaca
4501 ctggctgcta actctctgtg ccttgtctga agtcaccaaa ctgtcccctg acattataca
4561 agcaaattcc atgttctcat tttacggtga tgacgagatt gtcagcaccg acataaaatt
4621 ggaccctgaa caattgaccg ccaagttgaa ggagtacggc ctgaaaccaa ctcgcccaga
4681 caagaccgag ggacccctga tcatcagtga agatttgaac ggactcactt tcctccgaag
4741 gacggtgact cgtgacccag ctggctggtt tggaaaactg gaccaaagtt caattttgag
4801 gcagatgtac tggactagag ggccaaatca tgaagacccc aatgagacaa tgatacccca
4861 ttctcagaga cccatacagc tcatggcact gcttggtgaa gcctctcttc acggaccctc
4921 tttctacagt agaattagta aattggtcat aactgaactt aaagaaggtg ggatggactt
4981 ttacgtgcca aggcaggagc ccatgttcag gtggatgagg ttttctgact tgagcacgtg
5041 ggagggcgat cgcaatctgg ctcccaattt tgtgaatgaa gatggcgtcg agtgacgcca
5101 acccatctga tgggtccgca gccaacctcg taccagaggt caacaatgag gttatggctt
5161 tggagcccgt tgttggtgcc gctattgcgg cacctgtagc gggccaacaa aatgtaattg
5221 acccctggat tagaaacaat tttgtacaag cccctggtgg ggagttcaca gtatccccta
5281 gaaatgctcc aggtgaaata ctatggagcg cgcccctagg ccctgaccta aatccctacc
5341 tatcccattt agccagaatg tacaatggtt atgcaggtgg ttttgaagtg caggtaattc
5401 tcgcggggaa cgcgttcacc gccgggaaga ttatatttgc agcagtccca ccaaattttc
5461 caactgaagg tttaagccct agccaggtca ctatgttccc ccacataata gtagatgtta
5521 gacaattgga acctgtgctg atccccttac ccgatgttag gaataatttc tatcattaca
5581 atcagtcaaa tgattccact attaagttga tagcaatgtt gtacacacca cttagggcta
5641 ataatgctgg ggatgatgtt ttcacagttt cgtgccgagt tctcacgaga ccatcccccg
5701 attttgattt catattttta gtaccaccca cagttgaatc aagaactaaa ccattctctg
5761 tcccagtttt aactgttgag gagatgacca attcaagatt ccccatccct ttggaaaagt
5821 tgtttacagg ccccagcagt gcatttgtcg ttcaaccaca aaacggcaga tgcacaactg
5881 atggcgtgct tctaggcacc acccaacttt ctcctgtcaa catctgcacc ttcagagggg
5941 atgtcactca catcacaagt agtcacaact acactatgaa tttggcgtct caaaattgga
6001 acaactatga tccaacagaa gaaatcccag cccctctagg aactccagat tttgtgggga
6061 agatccaagg catgctcacc cagaccacaa ggacagatgg ttcaacacgc ggtcacaaag
6121 ctacagtgta cactgggagc gccgactttg ctccaaaact gggtagagtt caatttgaaa
6181 ctgacacaaa ccatgatttt gaagccaatc aaaacacaaa gttcacccca gtcggtgtca
6241 ttcaagatgg tagcaccacc catcgaaacg aaccccagca gtgggtgctc ccaagttact
6301 caggcagaaa tactcacaat gtacatttgg cccccgctgt agcccccacc tttccgggtg
6361 agcaacttct cttcttcaga tccaccatgc ccggatgcag cgggtacccc aacatggatt
6421 tggactgtct gctcccccag gaatgggtgc agtacttcta ccaagaggca gccccagcac
6481 aatctgatgt ggctctgcta agatttgtga atccagacac aggtagggtt ttgtttgagt
6541 gcaagcttca caaatcaggc tatgttacag tggctcacac tggccaacat gatttggtta
6601 tcccccccaa tggttacttt aggtttgatt cctgggtcaa ccagttctac acgcttgccc
6661 ccatgggaaa tggaacgggg cgtagacgtg cagtataatg gctggagctt tctttgctgg
6721 attggcatct gatgtccttg gctctggact tggttccctt atcaatgctg gggctggggc
6781 catcaaccaa aaggttgagt ttgaaaataa cagaaaattg caacaagcat ccttccaatt
6841 tagcagcaat ttgcaacagg cttcctttca acatgataaa gagatgctcc aagcacaaat
6901 tgaggccacc aaaaagctac aacaggaaat gatgagagtt aaacaggcaa tgctcttaga
6961 gggtgggttc tctgagacag atgcagcccg cggggcaatt aacgccccca tgacaaaggc
7021 tttggactgg agcgggacaa ggtactgggc tccagatgct agaattacaa cacacaattc
7081 aggccacttt tccacccctc aaccatcggg ggcactgcca ggaagagcta gtcttaggga
7141 tgctgtccct gctcggggac cctccaccaa atcttctaac tcttctgctg ccacttctgt
7201 gtactcaaat caaactactt caacgagact tggttctaca gctggttctg gaaccagtgt
7261 ctcaagcctc ccgtcgactg caaggactag gagctgggtt gaggatcaaa ataggaattt
7321 gtcacctttc atgagggggg cccacaacat atcatttgtc accccaccat ctagcagatc
7381 ctctagccaa ggcacagtct caaccgtgcc taaagaaatt ttggactcct ggactggcgc
7441 tttcaacacg cgcaggcagc ctctcttcgc tcacattcgt aagcgagggg agtcacgggc
7501 gtaatgtgaa aagacaaaat agattatttt ctttttcttt tctttagtgt ctttt
//