Typing tool
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Typing tool
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Complete norovirus genomes
| PP267268 | GII.2 | |
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| GII.P16 |
ORF1: 1..5098
ORF2: 5079..6707
ORF3: 6707..7486
LOCUS PP267268 7513 bp RNA linear VRL 09-FEB-2024
DEFINITION Norovirus GII isolate 1911209 nonstructural polyprotein (ORF1)
gene, partial cds; and VP1 (ORF2) and VP2 (ORF3) genes, complete
cds.
ACCESSION PP267268
VERSION PP267268.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7513)
AUTHORS Tao,L., Wang,X. and Ding,J.
TITLE Direct Submission
JOURNAL Submitted (04-FEB-2024) Department of Microbiology Laboratary,
Nanjing Municipal Center for Disease Control and Prevention
affiliated to Nanjing Medical University, Zizhulin No. 2, Nanjing,
Jiangsu 210003, China
COMMENT ##Assembly-Data-START##
Assembly Method :: BWA v. 0.7.17-r1188
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7513
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="1911209"
/isolation_source="stool sample"
/host="Homo sapiens"
/db_xref="taxon:122929"
/country="China"
/collection_date="20-Nov-2019"
/note="genotype: GII.2[P16]"
gene <1..5098
/gene="ORF1"
CDS <1..5098
/gene="ORF1"
/codon_start=2
/product="nonstructural polyprotein"
/protein_id="WVN22292.1"
/translation="KMASNDATVAVACNNNNDKEKSSGEGLFTNMSSTLKKALGARPK
QPAPRDKPQKPPRPPTPELVKRIPPPPPNGEEEEEPAIRYEVKSGISGLPELTTVPQP
DVANTAFSVPPLSLRENREAKEPLTGAILEMWDGEIYHYGLYVEKGLVLGVHKPPAAI
SMARVELTPLSLYWRVVYTPQYLISPETLRRLNGEAFPYTAFDNNCYAFCCWVLDLND
SWLSRRMIQRTTGFFRPYQEWNRKPLPTMDDSKIKKVANIFLCSLSTLFTRPIKDLIG
KIKPLNILNILATCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPE
DLAVELVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFF
PKKEEANELAMVRAIEDAVLDLEAIENNHMTTLLKDKDSLATYMKTLDMEEEKARRLS
TKSASPDIVGTINALLARIAAARSLVHRAKEELSSRIRPVVVMISGKPGIGKTHLARE
VARKVASTLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRIQELADT
CPLTLNCDRIENKGKVFDSEVIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVE
KAKRDFPGQPDMWKDAFKPDFSHIKLQLAPQGGFDKNGNTPHGKGVMKTLTTGSLIAR
ASGLLHERMDEFELQGPTITTFNFDRNRITAFRQLAAENKYGLVDTMKVGNQLKGVKT
MEELKQAIRNVTIKRCQIIYGGSTYDLESDGKGKVLVEKVKNTSVQTNNELAGALHHL
KHARIRYYVKCVQEAVYSIIQIAGAAFVTTRIARRMNIQELWSKPQLDQNESETKEEA
PKSEDDEFIISSKDIKEEGKKGKNKTGRGKKHTAFSSKGLSDEEYDEYKRIREERNGK
YSIEEYLQDRDRYYEELAIAKATEEDFCEEEEIKIRQRIFRPTRKQRKEERATLGLVT
GSEIRKRNPDDFKPKGKLWADDNRSVDYNEKLDFEAPPSIWSRIVSFGSGWGFWVSPS
LFITSTHVIPAGITEAFGVPIKQIQIHKSGEFCRFRFPKPIRPDVTGMILEEGAPEGT
VATVLIKRPTGELMPLAARMGTHATMKIQGRMVGGQMGMLLTGSNAKGMDLGTTPGDC
GCPYIYKRGNDYIAIGVHTAAARGGNTVICATQGSEGEATLEGGDDKGTYCGAPILGP
GGAPKLSTKTKFWRSSNTPLPPGTYEPAYLGGRDPRVKGGPSLQQVMRDQLKPFTEPR
GKPPRPSVLEAAKQTIINVLEQTLDPPQKWTYAQACASLDKTTSSGHPHHVRKNEFWN
GETFTGKLADQASKANLMFEEGKHMTPVYTAALKDELVKTEKVYGKIKKRLLWGSDLS
TMIRCARSFGGLMDEMKAHCISLPVRVGMNMNEDGPIIFEKHSRYKYHYDADYSRWDS
TQQRAVLAAALEIMVRFSAEPQLAQIVAEDLLAPSVVDVGDFKITINEGLPSGVPCTS
QWNSIAHWLLTLCALSEVTKLSPDIIQANSMFSFYGDDEIVSTDIKLDPEQLTAKLKE
YGLKPTRPDKTEGPLIISEDLNGLTFLRRTVTRDPAGWFGKLDQSSILRQMYWTRGPN
HEDPNETMIPHSQRPIQLMALLGEASLHGPSFYSKISKLVITELKEGGMDFYVPRQEP
MFRWMRFSDLSTWEGDRNLAPNFVNEDGVE"
mat_peptide <1..994
/gene="ORF1"
/product="p48"
mat_peptide 995..2092
/gene="ORF1"
/product="NTPase"
mat_peptide 2093..2623
/gene="ORF1"
/product="p22"
mat_peptide 2624..3022
/gene="ORF1"
/product="VPg"
mat_peptide 3023..3565
/gene="ORF1"
/product="Pro"
mat_peptide 3566..5095
/gene="ORF1"
/product="RdRp"
gene 5079..6707
/gene="ORF2"
CDS 5079..6707
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="WVN22293.1"
/translation="MKMASNDAAPSTDGAAGLVPESNNEVMALEPVAGAALAAPVTGQ
TNIIDPWIRANFVQAPNGEFTVSPRNAPGEVLLNLELGPELNPYLAHLARMYNGYAGG
MEVQVMLAGNAFTAGKLVFAAVPPHFPVENLSPQQITMFPHVIIDVRTLEPVLLPLPD
VRNNFFHYNQKDDPKMRIVAMLYTPLRSNGSGDDVFTVSCRVLTRPSPDFDFTYLVPP
TVESKTKPFTLPILTLGELSNSRFPVSIDQMYTSPNEIISVQCQNGRCTLDGELQGTT
QLQVSGICAFKGEVTAHLHDNDHLYNVTITNLNGSPFDPSEDIPAPLGVPDFQGRVFG
IISQRDKHNSPGHNEPANRGHDAVVPTYTAQYTPKLGQIQIGTWQTDDLTVNQPVKFT
PVGLNDTEHFNQWVVPRYAGALNLNTNLAPSVAPVFPGERLLFFRSYIPLKGGYGNPA
IDCLLPQEWVQHFYQEAAPSMSEVALVRYINPDTGRALFEAKLHRAGFMTVSSNTSAP
VVVPANGYFRFDSWVNQFYSLAPMGTGNGRRRVQ"
gene 6707..7486
/gene="ORF3"
CDS 6707..7486
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="WVN22294.1"
/translation="MAGAFVAGLAGDVLSNGLSSLINAGANAINQRAEFDFNQKLQQN
SFNHDKEMLQAQIQATKQLQADMMAIKQGVLTAGGFSPADAARGAVNAPMTQALDWNG
TRYWAPNSMRTTSYSGKFTSTAPVRQADFQHTQSRPSSGSSVSSFATQSSRPTLTTTT
GSPHGTASSNSTRSTSLSQSTVSRATSRTGEWVRDQNRNLEPYMHGALQTAFVTPPSS
RASDGTVSTVPKGVLDSWTPAFNTRRQPLFAHLRKRGESQA"
ORIGIN
1 gaagatggcg tctaacgacg ctaccgttgc cgttgcttgc aacaacaaca acgacaaaga
61 aaaatcttca ggtgaaggct tattcacaaa tatgtcttcc accttaaaga aagccctcgg
121 ggctaggccc aaacagcctg ccccgagaga caaaccacaa aagcccccaa gaccaccaac
181 tcccgagttg gtcaagagga taccccctcc tccacctaac ggcgaagaag aagaagaacc
241 agccattagg tatgaggtca agagtgggat ctctggcctg cccgagctca caacagtccc
301 ccaaccggac gtggccaaca cagcattcag tgttccacca ctgagcttga gagaaaacag
361 ggaggccaag gagccgctaa caggggcaat attagagatg tgggatggag agatatacca
421 ctatggcctg tatgtggaga aaggcttagt gttgggtgtg cacaaaccac ctgcagccat
481 aagcatggca agagtggagc tgacgccgtt gtcattgtac tggcgtgtgg tgtacactcc
541 ccaatacctc atctcccctg aaaccctcag gaggctcaac ggagaggcat tcccttacac
601 cgcctttgac aacaactgct atgccttttg ctgctgggtg ttagacctca atgactcatg
661 gcttagcagg aggatgatac aaaggacaac gggcttcttc agaccttacc aagagtggaa
721 cagaaaaccc ctgcctacca tggatgactc caaaattaag aaggtagcaa atatattcct
781 atgttcattg tccacattat tcaccagacc cataaaagac ctcataggaa aaatcaaacc
841 attgaacata ttgaatatcc tggcaacgtg tgactggact tttgccggaa tagtggaatc
901 tctgatatta cttgctgaac tcttcggagt tttctggaca cccccagatg tgtctgctat
961 gatcgctccc ttactcgggg attacgagtt gcaagggcca gaagacctcg ccgttgaact
1021 cgtgcctgtg gtaatggggg ggattggttt ggtgttggga ttcaccaaag agaaaattgg
1081 caaaatgttg tcctcagcag catcaacact cagggcttgc aaagatcttg gtgcctatgg
1141 cttggagata ctcaaattgg tcatgaagtg gttcttccca aagaaagagg aggccaatga
1201 gctagctatg gtgagggcca tagaggatgc tgtattagac cttgaggcaa tagaaaataa
1261 ccacatgaca accctgttga aagacaaaga cagtttagca acatacatga aaacactgga
1321 catggaggag gagaaagcca ggaggttgtc cacaaaatct gcatcccctg acatagttgg
1381 gacaatcaac gccctgctgg ctcggatagc agcggctagg tcattagtcc acagggccaa
1441 ggaagagcta tctagtagga taaggccagt agttgttatg atatctggca agccaggaat
1501 aggcaaaacc catctggcca gggaggtggc aagaaaggtg gcatccactc tcacaggaga
1561 tcaaagagtc ggactcatac cacgaaacgg tgtggaccat tgggatgcat acaaaggtga
1621 gagagtcgtg ctgtgggacg actatggcat gagtaaccct attcatgatg ctcttcgcat
1681 acaagaattg gctgatacgt gtcccctcac cttaaattgt gacagaattg aaaataaggg
1741 aaaagttttt gacagtgaag tcataataat tacaacaaat cttgccaatc cagccccact
1801 tgattatgtc aactttgagg cctgttccag gagaattgat tttctggtgt acgctgaggc
1861 accagaagta gaaaaggcaa aacgggactt tcctggtcag ccagatatgt ggaaggacgc
1921 cttcaaaccg gacttttcac acattaagct acagcttgca ccccagggcg gctttgacaa
1981 gaatggcaac accccacatg ggaaaggagt gatgaagacc ctcactaccg gttctctgat
2041 tgcccgtgca tcaggcttac tgcatgagag gatggatgaa tttgaactcc aaggccccac
2101 aatcaccacc tttaatttcg accgaaacag aatcacggca ttcagacaat tggctgcaga
2161 aaacaagtat gggttggtgg ataccatgaa agttggcaat caattaaaag gagtgaaaac
2221 catggaagaa ctcaaacaag caatcaggaa tgtgaccatc aagaggtgcc agatcatcta
2281 cggtggttcc acgtatgacc ttgaatctga tggcaagggc aaagttttgg tggaaaaagt
2341 caagaacacc tctgtacaga ccaataacga gttggctggg gccctgcacc atctcaaaca
2401 tgcccgaatt aggtactatg tcaaatgtgt gcaagaagca gtctattcca tcatacaaat
2461 tgccggcgct gcgtttgtca ccacgcgcat cgcacgccgc atgaacatac aagaactctg
2521 gtcgaagcca caactagatc aaaatgaatc agagactaag gaagaggccc ccaagtcaga
2581 agatgacgag ttcatcatat cttctaagga catcaaggag gaaggaaaga agggcaaaaa
2641 caaaactggc cgtggcaaga aacacactgc attctccagc aagggcctga gcgatgagga
2701 gtatgacgag tacaagagga taagagaaga gagaaatggg aagtactcta tagaggagta
2761 tcttcaagac agagacaggt actatgagga gctcgccatt gccaaggcca cggaagaaga
2821 cttctgtgaa gaggaggaga tcaaaatccg tcagagaatt ttccgtccca ccaggaaaca
2881 aagaaaggaa gagagggcca cattagggct agtaacaggt tcagaaatca gaaaaagaaa
2941 ccctgatgac ttcaaaccca aagggaaact gtgggccgat gacaacagga gtgttgacta
3001 caatgagaaa ctggactttg aggccccccc aagcatatgg tctaggattg tgagctttgg
3061 ctctggctgg ggcttctggg tgtcaccaag ccttttcata acatcaactc atgtaatccc
3121 cgcaggcata acagaagcat ttggagtccc catcaaacaa attcagatcc acaaatcagg
3181 cgaattttgc cgattcagat tcccaaaacc aattagacca gatgtgacag gaatgatctt
3241 ggaagaaggt gcgcctgagg gcaccgtggc aactgtgctc atcaaacgcc ccaccggaga
3301 gctcatgcct cttgcagcca gaatgggaac acacgcaacc atgaaaattc aaggccgcat
3361 ggttggcgga cagatgggta tgttgctcac tggatcaaat gctaaaggaa tggacttggg
3421 aacaactcct ggtgactgtg gctgtcctta catctataaa aggggcaatg actatatagc
3481 cattggggtg cacactgcag cagcccgtgg tggaaacact gtcatctgtg ccacacaggg
3541 aagtgagggt gaggcaactc ttgagggtgg agatgacaaa ggaacgtact gtggggcacc
3601 cattctaggc cctgggggtg caccaaaatt gagcaccaaa accaaatttt ggaggtcatc
3661 gaacacgccc cttccaccag ggacatatga gcctgcctac ctcggtggcc gtgacccgcg
3721 tgttaagggt gggccttccc tgcagcaggt gatgagagac cagttgaagc catttactga
3781 acccaggggc aaacctccaa gaccaagtgt attggaagca gccaaacaaa ccatcatcaa
3841 tgtcctcgaa caaaccctgg accctccaca aaaatggaca tacgcacagg cgtgcgcctc
3901 acttgacaaa accacctcca gcgggcaccc ccatcacgtc cgaaagaatg aattctggaa
3961 tggtgagacc ttcactggta aactggcaga ccaagcatca aaagcaaacc taatgtttga
4021 ggaagggaaa cacatgacac cagtgtacac agcagcactc aaggacgagc tagtcaagac
4081 tgagaaagtt tatggaaaga tcaagaagag actgctctgg ggctctgact tgtccaccat
4141 gatccggtgt gctaggtcat ttggtgggct tatggacgag atgaaggcac actgcatatc
4201 actcccagtc cgagttggca tgaatatgaa tgaagatggc ccaataatat ttgagaaaca
4261 ttccagatac aaatatcact atgatgcaga ctactctcgt tgggattcaa cacaacagag
4321 ggcagttcta gcagcagcct tggaaatcat ggtcagattc tctgcagaac cacaattagc
4381 acaaatagtc gctgaggatc tgctggcccc tagtgtagta gatgtaggag actttaaaat
4441 cacaataaat gaagggctcc cttctggtgt gccatgcact tctcaatgga actccatcgc
4501 acactggctg ctaactctct gtgccttgtc tgaagtcacc aaactatccc ctgacattat
4561 acaggcaaat tccatgttct cattttacgg tgatgacgag attgtcagta ccgacataaa
4621 attggaccct gaacagttaa ccgccaaatt gaaggagtac ggcctgaaac caacccgccc
4681 agacaaaacc gagggacccc tgattatcag tgaagatttg aacggtctca ctttcctccg
4741 aaggacggtg actcgtgacc cagctggctg gtttggaaaa ctggaccaaa gctcaatttt
4801 gaggcagatg tactggacta gaggaccaaa tcatgaagac cccaatgaga caatgatacc
4861 ccattcccaa agacccatac agctcatggc actgcttggt gaagcctctc ttcacggacc
4921 ctctttctac agtaaaatca gtaaattggt cataactgaa ctcaaagaag gtgggatgga
4981 cttttacgtg ccaaggcagg aacccatgtt caggtggatg aggttttctg acttgagcac
5041 gtgggagggc gatcgcaatc tggctcccaa ttttgtgaat gaagatggcg tcgaatgacg
5101 ccgctccatc tactgatggt gcagccggcc tcgtgccaga aagtaacaat gaggtcatgg
5161 ctcttgaacc cgtggctggt gccgccttgg cagccccggt caccggtcaa acaaatatta
5221 tagacccttg gattagagca aattttgtcc aggcccccaa tggtgaattt acagtctctc
5281 cccgaaatgc ccctggtgaa gtgctactga atctagagtt gggtccagaa ttaaatcctt
5341 atctggcaca tttagcaaga atgtacaatg ggtatgccgg tgggatggag gtgcaggtca
5401 tgttggctgg gaacgcgttc acagccggca agttggtctt cgccgccgtg ccaccccact
5461 tcccggttga aaaccttagc ccacagcaaa tcaccatgtt ccctcatgtg atcatagatg
5521 tgagaacctt ggaacctgtt ttattaccac tccctgatgt taggaataat ttcttccatt
5581 ataaccagaa agatgatccc aagatgagaa ttgtggctat gctttatacc cccctcaggt
5641 ctaatggttc aggtgatgat gtgtttacag tctcctgtag agtgttgact agaccttccc
5701 ctgactttga cttcacatac ctggtgccac caacagtgga gtctaaaaca aagccattca
5761 ccctcccaat cctcacactt ggggaacttt ccaattctag gttcccagtg tccatagacc
5821 agatgtacac cagccctaat gaaattatat cagtgcagtg tcaaaatggt aggtgcacac
5881 tggacgggga gctccaaggg acaacacaac tccaagtcag tggcatttgt gctttcaaag
5941 gtgaagtgac cgcccacttg catgacaatg atcacctata taatgttacc atcacaaact
6001 tgaatgggtc cccttttgat ccctccgagg atatccctgc ccctttgggt gtgcctgact
6061 tccagggaag ggtttttggt atcatctccc aaagagataa acacaatagt cctggacata
6121 atgaaccagc aaacagggga cacgacgctg tggtccctac ttacacagca cagtacactc
6181 caaaacttgg acaaattcaa attggcacat ggcaaactga cgaccttaca gtcaaccaac
6241 cagtcaaatt caccccagtt ggactcaatg acactgaaca cttcaaccaa tgggtggtcc
6301 ctaggtatgc tggtgcccta aacctcaata caaaccttgc cccttctgtt gctccagtat
6361 ttccaggaga gcgtctgctc ttcttcagat catacattcc cctcaagggc ggttatggaa
6421 acccagccat tgattgccta ctaccacaag agtgggtgca gcacttctac caggaagcag
6481 ccccttcaat gagtgaggtg gccctcgtca gatacatcaa cccggacact ggtcgggcac
6541 tgtttgaggc caagctccac agagctggtt tcatgacagt ctcgagcaac accagtgccc
6601 cggtggttgt gcctgccaac gggtacttca gatttgattc ttgggtgaac caattttatt
6661 ctctcgcccc catgggaact gggaatgggc gtagaagggt tcaataatgg ctggagcttt
6721 tgtagctggt cttgcagggg acgtgctcag caatgggctt agttcattaa tcaatgcagg
6781 tgctaatgca ataaatcaga gggcagaatt tgattttaat caaaaattgc agcaaaattc
6841 ttttaatcat gataaggaga tgttgcaggc tcagattcag gcaactaagc agctgcaggc
6901 agacatgatg gctataaaac aaggggtctt gaccgctggc ggcttttccc ctgctgatgc
6961 agccagaggt gctgtgaacg cgcccatgac acaggcgctg gattggaatg gcacaaggta
7021 ttgggcacca aactccatga ggaccacatc ttattctgga aagttcacat caaccgcccc
7081 agtgaggcag gctgacttcc agcacactca aagccggcct tcgagtggct cctctgtgtc
7141 ttcctttgcc actcagtctt caaggccaac tttgaccaca accactggtt ccccacatgg
7201 cacagcctca tcaaattcaa ctcgcagcac aagcctctcc caatcaacgg tctccagagc
7261 tacatctagg actggtgagt gggttagaga ccaaaataga aatttggaac cctacatgca
7321 tggtgcctta cagacagcct ttgtcacccc accttccagc agggcatctg acgggacagt
7381 ctcaaccgtc cctaaaggtg ttttggactc ctggacacct gcgtttaaca cccgcaggca
7441 gccgcttttt gcacacctcc gtaagagggg ggagtcacaa gcttagtgaa aaggtgaaaa
7501 tttatttagg acg
//