Typing tool
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Typing tool
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Complete norovirus genomes
| OR797351 | GII.3 | |
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| GII.P12 |
ORF1: 1..1589
ORF2: 1570..3216
ORF3: 3216..3693
LOCUS OR797351 3693 bp RNA linear VRL 08-JAN-2024
DEFINITION Norovirus GII isolate SDJN201709 nonstructural polyprotein (ORF1)
gene, partial cds; VP1 (ORF2) gene, complete cds; and VP2 (ORF3)
gene, partial cds.
ACCESSION OR797351
VERSION OR797351.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 3693)
AUTHORS Li,C., Song,S., Huang,X., Liu,X., Lv,H., Shen,Y., Wei,X., Zhang,W.
and Xu,Y.
TITLE Molecular epidemiology and genetic diversity of norovirus among
hospitalized patients with acute gastroenteritis in Shandong,
China, 2016-2018
JOURNAL J Med Virol 95 (12), e29339 (2023)
PUBMED 38130177
REFERENCE 2 (bases 1 to 3693)
AUTHORS Li,C., Song,S., Huang,X., Liu,X., Lv,H., Shen,Y., Wei,X., Zhang,W.
and Xu,Y.
TITLE Direct Submission
JOURNAL Submitted (10-NOV-2023) school of public health, Shandong
university, 44 Wenhua West Road, Jinan, Shandong 250000, China
COMMENT ##Assembly-Data-START##
Assembly Method :: BWA v. 0.7.17
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..3693
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="SDJN201709"
/isolation_source="stool"
/host="Homo sapiens"
/db_xref="taxon:122929"
/country="China"
/collection_date="2017-03-13"
/note="genotype: GII.3[P12]"
gene <1..1589
/gene="ORF1"
CDS <1..1589
/gene="ORF1"
/codon_start=3
/product="nonstructural polyprotein"
/protein_id="WPC83750.1"
/translation="GNTVICATQGSEGEATLEGGDSKGTYCGAPILGPGSAPKLSTKT
KFWRSSTAPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEPRGRPPKPSVLE
AAKKTIVNVLEQTIDPPQKWSFAQACASLDKTTSSGHPHHMRKNDCWNGESFTGKLAD
QASKANLMFEEGKNMTPVYTGALKDELVKTDKIYGKIKKRLLWGSDLATMIRCARAFG
GLMEELKAHCVTLPVRVGMNMNEDGPIIFERHSRYKYHYDADYSRWDSTQQRAVLAAA
LEIMVKFSPEPHLAQKVAEDLLSPSVMDVGDFKISINEGLPSGVPCTSQWNSIAHWLL
TLCALSEVTNLSPDIIQANSLFSFYGDDEIVSTDIKLDPEKLTAKLKEYGLKPTRPDK
TEGPLVISEDLNGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGPNHEDPSETMIP
HSQRPIQLMSLLGEAALHGPAFYTKISKLVIAELKEGGMDFYVPRQEPMFRWMRFSDL
STWEGDRNLAPSFVNEDGVE"
mat_peptide <1..56
/gene="ORF1"
/product="Pro"
mat_peptide 57..1586
/gene="ORF1"
/product="RdRp"
gene 1570..3216
/gene="ORF2"
CDS 1570..3216
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="WPC83751.1"
/translation="MKMASNDATPSNDGAAGLVPEINNEAMALDPVAGAAIAAPLTGQ
QNMIDPWIMNNFVQAPGGEFTVSPRNSPGEVLLNLELGPEINPYLAHLARMYNGYAGG
FEVQVVLAGNAFTAGKIIFAAIPPNFPIDNLSAAQITMCPHVIVDVRQLEPVNLPMPD
VRNNFFHYNQGSDSRLRLVAMLYTPLRANNSGDDVFTVSCRVLTRPSPEFSFNFLVPP
TVESKTKPFTLPILTISEMSNSRFPVPIDSLHTSPTENIVVQCQNGRVTLDGELMGTT
QLLPSQICAFRGVLTRSTSRASDQADTATPRLFNYYWHIQLDNLNGTPYDPAEDIPGP
LGTPDFRGKVFGVASQRNPDSTTRAHEAKVDTTAGRFTPKLGSLEISTESDDFDQNQP
TRFTPVGIGVDHEPDFQQWSLPDYSGQFTHNMNLAPAVAPNFPGEQLLFFRSQLPSSG
GRSNGILDCLVPQEWVQHFYQESAPAQTQVALVRYVNPDTGRVLFEAKLHKLGFMTIA
KNGDSPITVPPNGYFRFESWVNPFYTLAPMGTGNGRRRVQ"
gene 3216..>3693
/gene="ORF3"
CDS 3216..>3693
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="WPC83752.1"
/translation="MAGAFIAGLAGDVLTNTVGSLVNAGANAINQKVDFENNKYLQNA
SFNHDKEMLNAQIEATKRLQADMIAIKQGVLTAGGFSPTDAARGAINAPMTKVLDWNG
TRYWAPSATSTTSMSGGFTNQAVHRTTPNFKMNQAPRSTPSSGSSVRSFSTQVTGLS"
ORIGIN
1 gaggaaacac tgtcatttgt gccacccagg ggagtgaggg agaagccaca cttgaaggcg
61 gtgatagcaa ggggacctac tgcggagcac caatcttagg cccaggaagt gccccaaaac
121 ttagcaccaa gaccaagttc tggaggtcgt ccacggcacc actcccacct ggtacctatg
181 aaccagctta cctcggtggc aaggacccca gagttaaggg tggcccttca ctgcaacaag
241 ttatgaggga tcaactgaaa ccattcactg agcctagggg taggccacca aaaccaagtg
301 tgctagaagc tgccaagaaa accatcgtca atgtcctgga acagacaatt gacccacctc
361 aaaagtggtc gtttgcgcag gcatgcgcat ccctagacaa gaccacttct agcggccatc
421 cgcaccacat gcggaagaat gactgctgga atggggagtc cttcacagga aaattggcag
481 accaggcttc caaggccaac ctgatgtttg aggagggaaa gaacatgacc ccagtttaca
541 cgggtgcgct taaggatgag ctggtcaaga ctgacaagat ttatggtaag atcaaaaaga
601 ggcttctctg gggttcggac ctggcgacca tgattcggtg cgctcgagca ttcgggggtc
661 tgatggagga actcaaagca cattgtgtca cactacctgt tagggtgggt atgaatatga
721 atgaggatgg ccctatcatc tttgagagac actccagata taaatatcat tatgatgctg
781 actactcccg gtgggattca acacaacaaa gagccgtgtt ggcagcagcc ttagaaatca
841 tggtcaagtt ttccccagag ccacacctgg cccaaaaggt tgcagaagac cttctttctc
901 ccagcgtgat ggacgtgggt gatttcaaaa tatcaatcaa tgagggtctc ccctccggag
961 tgccctgcac ctcccaatgg aattccatcg cccactggct cctcactctc tgtgcactct
1021 ctgaggttac aaacctgtcc cctgacatta ttcaggccaa ctcactcttt tctttctacg
1081 gtgatgatga aattgtgagt acagacataa aattggaccc agaaaaactg acagcaaaac
1141 tcaaggaata cgggttgaaa ccgacccgcc ctgacaaaac tgaagggcct cttgtcattt
1201 ccgaagacct gaatggccta accttcctgc ggaggaccgt gactcgcgac ccagcaggct
1261 ggtttggaaa gttggaacag agctcaatac tcagacaaat gtactggact aggggcccca
1321 accatgaaga tccatctgaa acaatgatac cacactccca gaggcccata caattgatgt
1381 ctttgctggg tgaggcagca ctccacggcc cagcatttta caccaaaatc agtaaactgg
1441 tcattgcaga gttgaaggag ggtggcatgg atttttacgt gccaagacaa gagccaatgt
1501 tcagatggat gagattctcg gatctgagca cgtgggaggg cgatcgcaat ctggctccca
1561 gttttgtgaa tgaagatggc gtcgaatgac gccaccccat ctaatgatgg tgccgccggc
1621 ctcgtcccag agatcaacaa tgaggcaatg gcgctagatc cagtggcggg tgcagcgata
1681 gcagcacccc tcaccggcca gcaaaatatg attgatccct ggattatgaa taattttgtg
1741 caagcacctg gtggtgagtt cacagtgtct cctaggaatt cccctggtga agtgctcctc
1801 aatttggaat tgggcccaga gataaacccc tatctggccc atcttgctag aatgtataat
1861 ggttatgcag gtgggtttga agtgcaggta gtcctggctg gaaatgcgtt tacagcagga
1921 aagataatct ttgcagctat accccctaac ttcccaattg acaatctaag tgcagcacag
1981 atcacaatgt gcccacatgt gattgtggat gtcaggcagc tggaaccggt caacctcccg
2041 atgcctgacg ttcgcaataa cttcttccac tacaaccaag ggtctgattc gagattgcgc
2101 ttggttgcaa tgctgtatac acctcttagg gcaaacaact ctggggatga tgttttcact
2161 gtgtcttgta gagtgctgac tagacctagt cctgaattct cattcaactt ccttgtgcca
2221 cccactgtgg agtcaaagac aaaacctttt accctcccaa ttctgactat ctctgaaatg
2281 tctaactcta ggtttccagt gccgattgat tctctgcaca ccagcccaac tgagaatatt
2341 gttgtccagt gccaaaatgg acgcgtcact cttgatggcg agttgatggg caccactcag
2401 ctcttaccta gtcaaatctg tgctttcagg ggcgtgctca ctagatcaac aagcagggct
2461 agtgaccagg ccgacacagc aacccctaga ttgtttaatt attattggca catacaattg
2521 gataatctaa atgggactcc ttatgatcct gcagaagaca taccaggccc cctagggaca
2581 ccagatttcc ggggcaaagt ctttggcgtg gccagccaaa gaaaccccga cagtacaact
2641 agagcacatg aagcaaaggt ggacacaaca gctggtcgct tcaccccaaa actaggctca
2701 ttagagatat ccactgaatc tgatgatttt gaccaaaacc aaccaacaag attcacccca
2761 gttggcattg gggttgacca cgagccagac ttccagcaat ggtctttacc cgattactct
2821 ggccagttca ctcacaacat gaacttagcc ccagctgttg ctcccaactt ccctggagag
2881 cagctccttt tcttccgctc acagttacca tcttctggtg ggcgatccaa tgggattcta
2941 gattgcctgg tcccccaaga atgggtccag cacttctacc aagaatcggc ccccgcccaa
3001 acccaggtgg ctctggttag atatgtcaac cctgacactg gtagagtgtt gtttgaggcc
3061 aagctgcaca agttaggttt catgaccata gctaagaatg gtgactctcc aataactgtc
3121 ccccctaatg gatattttag gtttgaatct tgggtgaacc cattttacac acttgccccc
3181 atgggaactg ggaatgggcg tagaagagtt caataatggc tggtgctttt atagcaggat
3241 tagctggtga tgtactcaca aatactgtag ggtctctagt taatgcaggg gctaatgcta
3301 ttaatcaaaa agttgatttt gaaaataata aatatttgca aaatgcttcc ttcaatcatg
3361 ataaggaaat gttaaatgca cagattgagg caacaaagag attacaggct gatatgattg
3421 ctatcaaaca gggggttttg accgctggcg gcttttcccc cactgatgca gctcgcgggg
3481 caatcaacgc ccccatgaca aaagtcctag attggaatgg aacaaggtac tgggcaccaa
3541 gtgccacctc tacaacctcg atgtcgggtg gcttcacaaa ccaggctgtg cacagaacca
3601 cgccaaactt taaaatgaac caggccccca gatccacacc cagcagtggg tcttcagtga
3661 ggtcattctc aacccaagtc actggtctga gct
//