Typing tool
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Typing tool
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Complete norovirus genomes
| OR797350 | GII.3 | |
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| GII.P12 |
ORF1: 1..1589
ORF2: 1570..3216
ORF3: 3216..3705
LOCUS OR797350 3705 bp RNA linear VRL 08-JAN-2024
DEFINITION Norovirus GII isolate SDYT201711 nonstructural polyprotein (ORF1)
gene, partial cds; VP1 (ORF2) gene, complete cds; and VP2 (ORF3)
gene, partial cds.
ACCESSION OR797350
VERSION OR797350.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 3705)
AUTHORS Li,C., Song,S., Huang,X., Liu,X., Lv,H., Shen,Y., Wei,X., Zhang,W.
and Xu,Y.
TITLE Molecular epidemiology and genetic diversity of norovirus among
hospitalized patients with acute gastroenteritis in Shandong,
China, 2016-2018
JOURNAL J Med Virol 95 (12), e29339 (2023)
PUBMED 38130177
REFERENCE 2 (bases 1 to 3705)
AUTHORS Li,C., Song,S., Huang,X., Liu,X., Lv,H., Shen,Y., Wei,X., Zhang,W.
and Xu,Y.
TITLE Direct Submission
JOURNAL Submitted (10-NOV-2023) school of public health, Shandong
university, 44 Wenhua West Road, Jinan, Shandong 250000, China
COMMENT ##Assembly-Data-START##
Assembly Method :: BWA v. 0.7.17
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..3705
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="SDYT201711"
/isolation_source="stool"
/host="Homo sapiens"
/db_xref="taxon:122929"
/country="China"
/collection_date="2017-04-03"
/note="genotype: GII.3[P12]"
gene <1..1589
/gene="ORF1"
CDS <1..1589
/gene="ORF1"
/codon_start=3
/product="nonstructural polyprotein"
/protein_id="WPC83747.1"
/translation="GNTVICATQGSEGEATLEGGDSKGTYCGAPILGPGSAPKLSTKT
KFWRSSTAPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEPRGRPPKPSVLE
AAKKTIVNVLEQTIDPPQKWSFAQACASLDKTTSSGHPHHMRKNDCWNGESFTGKLAD
QASKANLMFEEGKNMTPVYTGALKDELVKTDKIYGKIKKRLLWGSDLATMIRCARAFG
GLMEELKAHCVTLPVRVGMNMNEDGPIIFERHSRYKYHYDADYSRWDSTQQRAVLAAA
LEIMVKFSPEPHLAQKVAEDLLSPSVMDVGDFKISINEGLPSGVPCTSQWNSIAHWLL
TLCALSEVTNLSPDIIQANSLFSFYGDDEIVSTDIKLDPEKLTAKLKEYGLKPTRPDK
TEGPLVISEDLNGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGPNHEDPSETMIP
HSQRPIQLMSLLGEAALHGPAFYSKISKLVIAELKEGGMDFYVPRQEPMFRWMRFSDL
STWEGDRNLAPSFVNEDGVE"
mat_peptide <1..56
/gene="ORF1"
/product="Pro"
mat_peptide 57..1586
/gene="ORF1"
/product="RdRp"
gene 1570..3216
/gene="ORF2"
CDS 1570..3216
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="WPC83748.1"
/translation="MKMASNDATPSNDGAAGLVPEINNEAMALDPVAGAAIAAPLTGQ
QNIIDPWIMNNFVQAPGGEFTVSPRNSPGEVLLNLELGPEINPYLAHLARMYNGYAGG
FEVQVVLAGNAFTAGKIIFAAIPPNFPIDNLSAAQITMCPHVIVDVRQLEPVNLPMPD
VRNNFFHYNQGSDSRLRLVAMLYTPLRANNSGDDVFTVSCRVLTRPSPEFSFNFLVPP
TVESKTKPFTLPILTISEMSNSRFPVPIDSLHTSPTENIVVQCQNGRVTLDGELMGTT
QLLPSQICAFRGVLTRSTSRASDQADIAIPRLFNYYWHIQLDNLNGTPYDPAEDIPGP
LGTPDFRGKVFGVASQRNPDSTTRAHEAKVDTTAGRFTPKLGSLEISTESDDFDQNQP
TRFTPVGIGVDHESDFQQWSLPDYSGQFTHNMNLAPAVAPNFPGEQLLFFRSQLPSSG
GRSNGILDCLVPQEWVQHFYQESAPAQTQVALVRYVNPDTGRVLFEAKLHKLGFMTIA
KNGDSPITVPPNGYFRFESWVNPFYTLAPMGTGNGRRRVQ"
gene 3216..>3705
/gene="ORF3"
CDS 3216..>3705
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="WPC83749.1"
/translation="MAGAFIAGLAGDIITNTVGSLVNAGANAINQKVDFENNKYLQNA
SFNHDKEMLNAQIEATKRLQADMIAIKQGVLTAGGFSPTDAARGAINAPMTKVLDWNG
TRYWAPSATSTTSMSGGFTNQAVHRTTPNFKMNQAPRTTPSSGSSVRSLSTQVTSLSS
HSS"
ORIGIN
1 gaggaaacac tgtcatttgt gccacccagg ggagcgaggg agaagccaca cttgaaggcg
61 gtgatagcaa ggggacttac tgcggagcac caatcttagg tccaggaagt gccccaaaac
121 tcagcaccaa gaccaagttc tggagatcat ccacggcacc actcccacct ggtacctatg
181 aaccagctta cctcggtggc aaggacccca gagttaaggg tggcccttca ctgcagcaag
241 ttatgaggga tcaactgaaa ccattcactg agcctagggg taggccacca aaaccaagtg
301 tgctagaagc tgccaagaaa accatcgtca acgtcctaga acagacaatt gacccacctc
361 aaaaatggtc gtttgcgcag gcatgcgcat ccctagacaa gaccacttct agcggccatc
421 cgcaccacat gcggaaaaat gactgctgga acggggagtc cttcacagga aaattggcag
481 accaggcttc caaggccaac ctgatgtttg aggagggaaa gaacatgacc ccagtttaca
541 cgggtgcgct taaggacgag ctggtcaaga ctgacaagat ttatggtaag atcaaaaaga
601 ggcttctctg gggttcggac ctggcgacca tgattcggtg cgctcgagca ttcgggggtc
661 tgatggagga actcaaagca cattgtgtca cactacctgt cagggtgggt atgaatatga
721 atgaggatgg ccctatcatc tttgagagac actccagata caaatatcat tatgatgctg
781 actactcccg gtgggattca acacaacaaa gagccgtgtt ggcagcagcc ttagaaatca
841 tggtcaagtt ttccccagag ccacacctgg cccaaaaggt tgcagaagac cttctttctc
901 ccagcgtgat ggacgtgggt gatttcaaaa tatcaatcaa tgagggtctc ccctccggag
961 tgccctgcac ctcccaatgg aattccatcg cccactggct cctcactctc tgtgcactct
1021 ctgaggttac aaacctgtcc cctgacatta ttcaggctaa ctctctcttt tctttctacg
1081 gtgatgatga aattgtgagt acagacataa aattggaccc agaaaaactg acagcaaaac
1141 tcaaggaata cgggttgaaa ccgacccgcc ctgacaaaac tgaggggcct cttgtcattt
1201 ccgaagacct gaatggccta accttcctgc ggaggaccgt gactcgcgac ccagcaggct
1261 ggtttggaaa gttggaacag agctcaatac tcagacaaat gtactggact agaggcccca
1321 accatgaaga tccatctgaa acaatgatac cacactccca gaggcccata caattgatgt
1381 ccttgctggg tgaggcagca ctccacggcc cagcattcta cagcaaaatc agtaaactgg
1441 tcattgcaga gctgaaggag ggtggcatgg atttttacgt gccaagacaa gagccaatgt
1501 tcagatggat gagattctcg gatctgagca cgtgggaggg cgatcgcaat ctggctccca
1561 gttttgtgaa tgaagatggc gtcgaatgac gccaccccat ctaatgatgg tgccgccggc
1621 ctcgtcccag agatcaacaa tgaggcaatg gcgctagatc cagtggcggg tgcagcgata
1681 gcagcacccc tcaccggcca gcaaaatata attgatccct ggattatgaa taattttgtg
1741 caagcacctg gtggtgagtt cacagtgtct cctaggaatt cccctggtga agtgctcctc
1801 aatttggaat tgggcccaga gataaacccc tatctggccc atcttgctag aatgtataat
1861 ggttatgcag gtgggtttga agtgcaggta gtcctggctg gaaatgcgtt tacagcagga
1921 aagataatct ttgcagctat accccctaac ttcccaattg acaatctaag tgcagcacag
1981 atcacaatgt gcccacatgt gattgtggat gtcaggcagc tggaaccagt caacctcccg
2041 atgcctgacg ttcgcaataa cttcttccac tacaaccaag ggtctgattc gagattgcgc
2101 ttggttgcaa tgctgtatac acctcttagg gcaaataact ctggggatga tgttttcact
2161 gtgtcttgta gagtgctgac tagacctagt cctgaatttt catttaactt ccttgtgcca
2221 cccactgtgg agtcaaagac aaaacctttt accctcccaa ttctgactat ctctgaaatg
2281 tctaattcta ggtttccagt gccaattgat tctctgcaca ccagcccaac tgagaatatt
2341 gttgtccagt gtcaaaatgg acgcgtcact cttgatggcg agttgatggg caccactcag
2401 ctcctaccta gtcaaatttg tgctttcaga ggcgtgctca ctagatcaac aagcagggct
2461 agtgaccagg ccgacatagc aatccctaga ttgtttaatt attattggca catacaattg
2521 gataacctaa atgggactcc ttatgaccct gcagaagaca taccaggccc cctagggaca
2581 ccagattttc ggggcaaagt ctttggcgtg gccagccaaa gaaaccccga cagtacaact
2641 agagcacatg aagcaaaggt ggacacaaca gctggtcgtt tcaccccaaa actaggctca
2701 ttagagatat ccactgaatc agatgacttt gaccaaaacc aaccaacaag attcacccca
2761 gttggcattg gggtcgacca tgagtcagac ttccagcaat ggtccttacc cgattactct
2821 ggccagttca cccacaacat gaacttagcc ccagctgttg ctcccaactt ccctggtgag
2881 cagctccttt tcttccgctc acagttacca tcttctggtg ggcgatccaa tgggattcta
2941 gattgcctgg tcccccaaga atgggtccag cacttctacc aagaatcagc ccccgcccaa
3001 acccaggtgg ctcttgttag atatgtcaac cctgacactg gtagagtgtt gtttgaggcc
3061 aagctgcaca aattaggttt catgactata gctaagaatg gtgactctcc aataactgtc
3121 cccccaaatg gatactttag gtttgaatct tgggtgaacc cattttatac acttgccccc
3181 atgggaactg ggaatgggcg tagaagagtt caataatggc tggtgctttt atagcaggat
3241 tagctggtga tataatcaca aatactgtag ggtctctagt taatgcaggg gctaatgcta
3301 ttaatcaaaa agttgatttt gaaaataata agtatttgca aaacgcttcc ttcaatcatg
3361 ataaagaaat gttaaatgca cagattgagg caacaaagag attacaggct gacatgattg
3421 ctatcaaaca gggggttttg accgctggcg gcttttcccc cactgatgca gctcgcgggg
3481 caatcaatgc ccccatgaca aaagtcctag attggaatgg aacaaggtac tgggcaccaa
3541 gtgccacctc tacaacctcg atgtcgggtg gcttcacaaa tcaggctgtg cacagaacca
3601 cgccaaattt taaaatgaac caggccccca gaaccacacc cagcagtggg tcttcagtga
3661 ggtcactctc aacccaagtc actagtctga gctcacactc gtccg
//