Typing tool

Complete norovirus genomes

OR797346  GII.3
 GII.P12

Length: 3,705 | 3 CDS

ORF1: 1..1589
ORF2: 1570..3216
ORF3: 3216..3705
LOCUS       OR797346                3705 bp    RNA     linear   VRL 08-JAN-2024
DEFINITION  Norovirus GII isolate SDJN201710 nonstructural polyprotein (ORF1)
            gene, partial cds; VP1 (ORF2) gene, complete cds; and VP2 (ORF3)
            gene, partial cds.
ACCESSION   OR797346
VERSION     OR797346.1
KEYWORDS    .
SOURCE      Norovirus GII
  ORGANISM  Norovirus GII
            Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
            Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE   1  (bases 1 to 3705)
  AUTHORS   Li,C., Song,S., Huang,X., Liu,X., Lv,H., Shen,Y., Wei,X., Zhang,W.
            and Xu,Y.
  TITLE     Molecular epidemiology and genetic diversity of norovirus among
            hospitalized patients with acute gastroenteritis in Shandong,
            China, 2016-2018
  JOURNAL   J Med Virol 95 (12), e29339 (2023)
   PUBMED   38130177
REFERENCE   2  (bases 1 to 3705)
  AUTHORS   Li,C., Song,S., Huang,X., Liu,X., Lv,H., Shen,Y., Wei,X., Zhang,W.
            and Xu,Y.
  TITLE     Direct Submission
  JOURNAL   Submitted (10-NOV-2023) school of public health, Shandong
            university, 44 Wenhua West Road, Jinan, Shandong 250000, China
COMMENT     ##Assembly-Data-START##
            Assembly Method       :: BWA v. 0.7.17
            Sequencing Technology :: Illumina
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..3705
                     /organism="Norovirus GII"
                     /mol_type="genomic RNA"
                     /isolate="SDJN201710"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:122929"
                     /country="China"
                     /collection_date="2017-04-28"
                     /note="genotype: GII.3[P12]"
     gene            <1..1589
                     /gene="ORF1"
     CDS             <1..1589
                     /gene="ORF1"
                     /codon_start=3
                     /product="nonstructural polyprotein"
                     /protein_id="WPC83735.1"
                     /translation="GNTVICATQGSEGEATLEGGDSKGTYCGAPILGPGSAPKLSTKT
                     KFWRSSTAPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEPRGRPPKPSVLE
                     AAKKTIVNVLEQTIDPPQKWSFAQACASLDKTTSSGHPHHMRKNDCWNGESFTGKLAD
                     QASKANLMFEEGKNMTPVYTGALKDELVKTDKIYGKIKKRLLWGSDLATMIRCARAFG
                     GLMEELKAHCVTLPVRVGMNMNEDGPIIFERHSRYKYHYDADYSRWDSTQQRAVLAAA
                     LEIMVKFSPEPHLAQKVAEDLLSPSVMDVGDFKISINEGLPSGVPCTSQWNSIAHWLL
                     TLCALSEVTNLSPDIIQANSLFSFYGDDEIVSTDIKLDPEKLTAKLKEYGLKPTRPDK
                     TEGPLVISEDLNGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGPNHEDPSETMIP
                     HSQRPIQLMSLLGEAALHGPAFYSKISKLVIAELKEGGMDFYVPRQEPMFRWMRFSDL
                     STWEGDRNLAPSFVNEDGVE"
     mat_peptide     <1..56
                     /gene="ORF1"
                     /product="Pro"
     mat_peptide     57..1586
                     /gene="ORF1"
                     /product="RdRp"
     gene            1570..3216
                     /gene="ORF2"
     CDS             1570..3216
                     /gene="ORF2"
                     /note="major capsid protein"
                     /codon_start=1
                     /product="VP1"
                     /protein_id="WPC83736.1"
                     /translation="MKMASNDATPSNDGAAGLVPEINNEAMALDPVAGAAIAAPLTGQ
                     QNIIDPWIMNNFVQAPGGEFTVSPRNSPGEVLLNLELGPEINPYLAHLARMYNGYAGG
                     FEVQVVLAGNAFTAGKIIFAAIPPNFPIDNLSAAQITMCPHVIVDVRQLEPVNLPMPD
                     VRNNFFHYNQGSDSRLRLVAMLYTPLRANNSGDDVFTVSCRVLTRPSPEFSFNFLVPP
                     TVESKTKPFTLPILTISEMSNSRFPVPIDSLHTSPTENIVVQCQNGRVTLDGELMGTT
                     QLLPSQICAFRGVLTRSTSRASDQADTATPRLFNYYWHIQLDNLNGTPYDPAEDIPGP
                     LGTPDFRGKVFGVASQRNPDSTTRAHEAKVDTTAGRFTPKLGSLEISTESGDFDQNQP
                     TRFTPVGIGVDHEADFQQWSLPDYSGQFTHNMNLAPAVAPNFPGEQLLFFRSQLPSSG
                     GRSNGILDCLVPQEWVQHFYQESAPAQTQVALVRYVNPDTGRVLFEAKLHKLGFMTIA
                     KNGDSPITVPPNGYFRFESWVNPFYTLAPMGTGNGRRRVQ"
     gene            3216..>3705
                     /gene="ORF3"
     CDS             3216..>3705
                     /gene="ORF3"
                     /note="minor structural protein; small basic protein"
                     /codon_start=1
                     /product="VP2"
                     /protein_id="WPC83737.1"
                     /translation="MAGAFIAGLAGDILTNTVGSLVNAGANAINQKVDFENNKYLQNA
                     SFNHDKEMLNAQIEATKRLQADMIAIKQGVLTAGGFSPTDAARGAINAPMTKVLDWNG
                     TRYWAPSATSTTSMSGGFTNQAVHRTTPNFKMNQAPRSTPSSGSSVRSLSTQVTSLSS
                     HSS"
ORIGIN      
        1 gaggaaacac tgtcatttgt gccacccagg ggagcgaggg agaagccaca cttgaaggcg
       61 gcgatagcaa ggggacctac tgcggtgcac caatcttagg cccaggaagt gccccaaaac
      121 ttagcaccaa gactaagttc tggaggtcat ccacggcacc actcccacct ggtacctatg
      181 aaccagctta cctcggtggc aaggacccca gagttaaggg tggcccttca ctgcaacaag
      241 ttatgaggga tcaactgaaa ccattcactg agcctagggg taggccacca aaaccaagtg
      301 tgctagaagc tgccaagaaa accatcgtca atgtcctaga acagacaatt gacccacctc
      361 aaaaatggtc gtttgcgcag gcatgcgcat ccctagacaa gaccacttct agcggtcatc
      421 cgcaccacat gcggaagaat gactgctgga acggggagtc cttcacagga aaattggcag
      481 accaggcttc caaggccaac ctgatgtttg aggaggggaa gaacatgacc ccagtttaca
      541 cgggtgcgct taaggacgag ctggtcaaga ctgacaagat ttatggtaag atcaaaaaga
      601 ggcttctctg gggttcggac ctggcgacca tgattcggtg cgctcgagca ttcgggggtc
      661 tgatggagga actcaaagca cattgtgtca cactacctgt tagggtgggt atgaatatga
      721 atgaggatgg ccctatcatc tttgagagac actccagata taaatatcac tatgatgctg
      781 actactcccg gtgggattca acacaacaaa gagctgtgtt ggcagcagcc ttagaaatca
      841 tggtcaagtt ttccccagag ccacacctgg cccaaaaggt tgcagaagac cttctttctc
      901 ccagcgtgat ggacgtgggt gatttcaaaa tatcaatcaa tgagggtctc ccctccggag
      961 tgccctgcac ctcccaatgg aattccatcg cccattggct cctcactctc tgtgcactct
     1021 ccgaggttac aaacctgtcc cctgacatta ttcaggctaa ctctctcttt tctttctacg
     1081 gtgatgatga aattgtgagt acagacataa aattggaccc ggaaaaactg acagcaaaac
     1141 tcaaggaata cgggttgaaa ccgacccgcc ctgacaaaac tgaagggcct cttgtcattt
     1201 ccgaagacct gaatggccta accttcctgc ggaggaccgt gactcgcgac ccagcaggct
     1261 ggtttggaaa gttggaacag agctcaatac tcagacaaat gtactggact agaggcccca
     1321 accatgaaga tccatctgaa acaatgatac cacactccca gaggcccata caattgatgt
     1381 ctttgctggg tgaggcagca ctccacggcc cagcattcta cagcaaaatc agcaaactgg
     1441 tcattgcaga attgaaggag ggtggcatgg atttttacgt gccaagacaa gaaccaatgt
     1501 tcagatggat gagattctcg gatctgagca cgtgggaggg cgatcgcaat ctggctccca
     1561 gttttgtgaa tgaagatggc gtcgaatgac gccaccccat ctaatgatgg tgccgccggc
     1621 ctcgtcccag agatcaacaa tgaggcaatg gcgctagatc cagtggcggg tgcagcgata
     1681 gcagcacccc tcaccggcca gcaaaatata attgatccct ggattatgaa taattttgtg
     1741 caagcacctg gtggtgagtt cacagtgtct cctaggaatt cccctggtga agtgctcctc
     1801 aatttggaat tgggcccaga gataaacccc tatctggccc atcttgccag aatgtataat
     1861 ggttatgcag gtgggtttga agtgcaggta gtcctggctg gaaatgcgtt tacagcagga
     1921 aagataatct ttgcagctat accccctaac ttcccaattg acaatctaag tgcagcacag
     1981 atcacgatgt gcccacatgt gattgtggat gtcaggcagc tggaaccggt caacctcccg
     2041 atgcctgacg ttcgcaacaa cttcttccac tacaaccaag ggtctgattc gagattgcgc
     2101 ttggttgcaa tgctgtacac acctcttagg gcaaataact ctggagatga tgttttcact
     2161 gtgtcttgta gagtgctgac tagacctagt cctgaattct catttaactt ccttgtgcca
     2221 cccactgtgg agtcaaagac aaaacctttt accctcccaa ttctgactat ctctgaaatg
     2281 tctaattcta ggtttccagt gccgattgat tctctgcaca ccagcccaac tgagaatatt
     2341 gttgtccagt gtcaaaatgg acgcgtcact cttgatggcg agttgatggg caccactcag
     2401 ctcttaccta gtcaaatctg tgctttcagg ggcgtgctca ctagatcgac aagcagggct
     2461 agtgaccagg ccgacacagc aacccctaga ttgtttaatt attattggca catacaattg
     2521 gataatctaa atgggactcc ttatgatcct gcagaagaca taccaggccc cctagggaca
     2581 ccagatttcc ggggcaaagt ctttggcgtg gccagccaaa gaaaccccga cagtacaact
     2641 agagcacatg aagcaaaggt ggacacaaca gctggtcgct tcaccccaaa actaggctca
     2701 ttagagatat ccactgaatc tggcgacttt gaccaaaacc aaccaacaag attcacccca
     2761 gttggcattg gggttgacca cgaggcagac ttccaacaat ggtccttacc cgattactct
     2821 ggccagttca ctcacaacat gaacttagcc ccagctgttg ctcccaactt ccctggtgag
     2881 cagctccttt tcttccgctc acagttacca tcttctggtg ggcgatccaa tgggattcta
     2941 gattgcctgg tcccccaaga atgggtccag cacttctacc aagaatcagc ccccgcccaa
     3001 acccaggtgg ctctggttag atatgtcaac cctgacactg gtagagtgtt gtttgaggcc
     3061 aagctgcaca aattaggttt catgactata gctaagaatg gtgactctcc aataactgtc
     3121 cccccaaatg gatactttag gtttgaatct tgggtgaacc cattttatac acttgccccc
     3181 atgggaactg ggaatgggcg tagaagagtt caataatggc tggtgctttt atagcaggat
     3241 tagctggtga tatactcaca aatactgtag ggtctctagt taatgcaggg gctaatgcta
     3301 ttaatcaaaa agttgatttt gaaaataata aatacttgca aaatgcttcc ttcaatcatg
     3361 ataaggaaat gttaaatgca cagattgagg caacaaagag attacaggct gacatgattg
     3421 ctatcaaaca gggggttttg accgctggcg gcttttcccc cactgatgca gctcgcgggg
     3481 caatcaacgc ccccatgaca aaagtcctag attggaatgg aacaaggtac tgggcaccaa
     3541 gtgccacctc tacaacctcg atgtcgggtg gcttcacaaa ccaggctgtg cacagaacca
     3601 cgccaaattt taaaatgaac caggccccca gatccacacc cagcagtggg tcttcagtga
     3661 ggtcactctc aacccaagtc actagtctga gctcacactc gtccg
//