Typing tool
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Typing tool
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Complete norovirus genomes
| OR792775 | GI.3 | |
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| GI.P13 |
ORF1: 1..5403
ORF2: 5387..7021
ORF3: 7021..7665
LOCUS OR792775 7665 bp RNA linear VRL 08-JAN-2024
DEFINITION Norovirus GI isolate SDLY201839 nonstructural polyprotein (ORF1)
gene, partial cds; VP1 (ORF2) gene, complete cds; and VP2 (ORF3)
gene, partial cds.
ACCESSION OR792775
VERSION OR792775.1
KEYWORDS .
SOURCE Norovirus GI
ORGANISM Norovirus GI
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7665)
AUTHORS Li,C., Song,S., Huang,X., Liu,X., Lv,H., Shen,Y., Wei,X., Zhang,W.
and Xu,Y.
TITLE Molecular epidemiology and genetic diversity of norovirus among
hospitalized patients with acute gastroenteritis in Shandong,
China, 2016-2018
JOURNAL J Med Virol 95 (12), e29339 (2023)
PUBMED 38130177
REFERENCE 2 (bases 1 to 7665)
AUTHORS Li,C., Song,S., Huang,X., Liu,X., Lv,H., Shen,Y., Wei,X., Zhang,W.
and Xu,Y.
TITLE Direct Submission
JOURNAL Submitted (09-NOV-2023) school of public health, Shandong
university, 44 Wenhua West Road, Jinan, Shandong 250000, China
COMMENT ##Assembly-Data-START##
Assembly Method :: BWA v. 0.7.17
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7665
/organism="Norovirus GI"
/mol_type="genomic RNA"
/isolate="SDLY201839"
/isolation_source="stool"
/host="Homo sapiens"
/db_xref="taxon:122928"
/country="China"
/collection_date="2018-08-09"
/note="genotype: GI.3[P13]"
gene <1..5403
/gene="ORF1"
CDS <1..5403
/gene="ORF1"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="WPB15375.1"
/translation="MMASNDAIAVADVSNNNANTNNENIGSRLMAKIRGRIGPQRGET
TTKIKDANMALDLLRRSQTPSPCRQTNDSAPKAQRDRPPRTASEVKRALGWDAEPEHQ
ESTARAWCDLSKEEKEEIMRNNERLFDAGGVTPSTLPSTFERTDSSSVTDEQQPVTWS
SNGGVDLGINELTTVRGPFWNMCPLPPLEARNSGPAKEPLIGDMVEFYEGHIFHYAIY
IGQGKTIGVHSPQAAFSIPRITIHPLVAWWRVCYIPTSQQRLTYEQLKELENEPWPYA
SITNNCYEFCCKVMALDDTWLQRRLVTSGKFNHPTQDWSQDTPDFHQDSKLEMVRDAV
LSAINGLVSQPFKNILSKIKPLNVLNLLSNCDWTFMGVVELVVLLAELFDVFWTPPDI
SSFIASLLPDFHLQGPEDLARDLVPLILGGIGLAIGFTRDKITKVMKSAVDGLRSATQ
LGQYGLEIFSIIKKYFFGGDQTEKTLRGIEDAVIDMEVLSSTNVTQLVKDKKLAKAYM
NVLDNEEEKARKLSVRSADPHIVTSVNNLISRISMARSALAKAQAELTSRPRPVVIMM
CGPPGIGKTKAAEHLAGRLAAEIRPGGKVGLVPRESIDHWDGYHGEDVLLWDDYGMSK
ITEDCNKLQAIADTAPLSLNCDRIENKGMQFSSDAIIITTNAPGPAPVDFVNLGPVCR
RVDFLVYCSAPEIEQTRRAHPGDTNAIKDLFKKDFSHLKMELAPQGGFDSQGNTPFGK
GVMKTTTLNRLLIQATALAMERQDEFQLQGAVYNFDEDRVAAFTNLARANGLGLISMA
TLGKKLRSVKSMEGLRNALLGYKIGECDIIWNTRVYSVKSDGSNVTIKEKQAPSSPQH
QAISTATLALSRLRAARALAYASCLQSAVLSILQVAGSALVVSRAVKRMFGTRTEQPI
LEGKHKEHNCRVHRAEAAGHGPIGHDGIIERYGLCESEQEGEDDQTVELPTADKEGKN
KGKTKKGRGRKSNFNAFSRRGLSDEEYEEYKKVREEKGGNYSIQEYLEDRQRYEEELA
EVQAGGDGGIGETEAEIRHRVFYKSKSGLRKQRQEERRQLGLVSGTEIRKRKPIDWTP
PKNDWSEDTRTVNYDEHISFEAPPSIWSRVVKFGSGWGFWVSSTVFITTTHVIPPGAK
EIFGENISNIAIHRVGEFTQFRFSKKMRPDLSGMVLEEGCPEGTVCTIMIKRDSGELL
PLAVRMGAVASMKIQGKLMHGQSGMLLTGANAKGMDLGTIPGDCGAPYIHKRGNDWVV
CGVHAAATKSGNTVVCAIQGGEGEATLEGGDQNKGHYAGHPILRYGSGPSLSTKTKFW
KSNPQPLPPGTYEPAYLGGKDPRVEGGPSLQQVLRDQLKPFAEPRGRLPEAGLLEAAV
ETVTNAIEQVMDTPVAWSYSDACMSLDKTTSSGYPHHKRKNDDWNGSSFVRELGDQAA
HANSMYELGKSMKPVYTAALKDELVKPDKVYNKIKKRLLWGADLGTVIRAARAFGPFC
EAIKPHVIKLPIKVGMNAIEDGPLIYAEHSKYKYHFDADYTAWDSTQNREIMMESFNI
MCKLTANPSLAAVVAQDLLSPSEMDVGDYVISVKDGLPSGFPCTSQVNSINHWIYTLC
ALSEVTGLAPDVIQSQSYFSFYGDDEIVSTDIEFDSNRLTQVLKEYGLKPTRPDKTDG
PIIVRQQVDGLVFLRRTISKDAIGYQGRLDRNSIERQLWWTRGPNHDDPFETLVPHTQ
RKVQLISLLGEAALHGEKFYRKIASRVIQEVKEGGLEIYIPGWQAMFRWMRFHDLSLW
TGDRDLLPDYVNDDGV"
mat_peptide <1..1218
/gene="ORF1"
/product="p48"
mat_peptide 1219..2307
/gene="ORF1"
/product="NTPase"
mat_peptide 2308..2907
/gene="ORF1"
/product="p22"
mat_peptide 2908..3327
/gene="ORF1"
/product="VPg"
mat_peptide 3328..3870
/gene="ORF1"
/product="Pro"
mat_peptide 3871..5400
/gene="ORF1"
/product="RdRp"
gene 5387..7021
/gene="ORF2"
CDS 5387..7021
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="WPB15376.1"
/translation="MMMASKDAPTNMDGTSGAGQLVPEANTAEPISMEPVAGAATAAA
TAGQVNMIDPWIMNNYVQAPQGEFTISPNNTPGDILFDLQLGPHLNPFLSHLAQMYNG
WVGNMKVKVLLAGNAFTAGKIIISCIPPGFVSQNISIAQATMFPHVIADVRVLEPIEV
PLEDVRNVLFHNNDNTPTMRLVCMLYTPLRASGSSSGTDPFVIAGRVLTCPSPDFSFL
FLVPPNVEQKTKPFSVPDLPLNVLSNSRVPSLIKFMMVSQDHGQMVQFQNGRVTLDGQ
LQGTTPTSASQLCKMRGTVYHASGGQGLNLTEIDGTPYHAFESPAPIGFPDIGDSDWH
INASPATAFGSGESVKRLDMEQGSSFAPHLGTVHYTNASYEANTDLICSLEWLSPPSG
GTPNKVNPWAIPRYGSTLTEAAQLAPPIYPPGFGEAIVFFMSDFPIANGQDGLRVPCT
IPQEFVTHFVNEQAPTRGEAALLHYVDPDTHRNLGEFKLYPEGFMTCVPNSSGSGPQT
LPINGVFTFVSWVSRFYQLKPVGTTGPVRRLGIRRS"
gene 7021..>7665
/gene="ORF3"
CDS 7021..>7665
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="WPB15377.1"
/translation="MAQAIFGAIAATAAGSAVGAGIQAGTEAALQHQRFQQDLTLQSN
TFKHDKEMLGLQVGASTALLQNSLNTRYNMLTNAGLSSSDAARVVVGAPATRVVDWNG
TRVSAPQSTATTLRSGGFMTIPTLYKGKQQQKAPTEIGLSNPNYGSSVSSRVADWVSS
QNSSRSSLGPYHPSALQTTWVTPPGSSSTSTISSVSTAPRYFNTDRLPLFANMRK"
ORIGIN
1 atgatggcgt ctaacgacgc tattgccgtt gctgatgtca gcaataacaa tgctaacacc
61 aacaatgaaa acataggatc tcgccttatg gcaaagatcc gtgggcgtat aggcccacaa
121 cgtggtgaaa caaccacaaa gatcaaagat gccaacatgg cgctcgacct tttacgccgg
181 tcacaaacac catctccatg tcggcaaact aatgacagcg cccccaaggc tcaaagggac
241 cgccccccgc ggaccgcttc agaggtaaaa agggcgctgg ggtgggatgc tgaaccagaa
301 caccaagaaa gcacagctag ggcatggtgt gacctctcaa aagaggagaa ggaagagata
361 atgcgtaaca atgagaggct ttttgatgct ggaggtgtca ctccatcgac cctgcccagc
421 acatttgaga ggactgattc aagcagtgtc actgatgagc aacaacctgt gacatggtct
481 tctaatggag gggttgacct tggtatcaat gaattgacca cagttcgtgg cccgttttgg
541 aatatgtgcc ccctcccacc actagaagcc cgtaatagtg gccctgctaa ggaacccctt
601 ataggtgaca tggtcgagtt ctatgaagga cacatattcc attatgccat ttacatcgga
661 cagggcaaga ctattggagt ccactcacca caggccgctt tttccatacc cagaataacc
721 atccacccac tggtggcttg gtggcgtgtg tgttacatcc ccactagcca acaacgcctt
781 acctacgaac agcttaagga gttggagaat gaaccatggc cctatgcctc aatcaccaac
841 aactgttatg agttttgctg taaagtgatg gcacttgatg atacctggct ccaaagaaga
901 ctggttacta gtggaaaatt taaccaccct acacaggact ggtcacagga caccccagat
961 ttccatcagg attcgaagct tgaaatggta agggacgctg tcttgtcggc catcaacggt
1021 cttgtatcac aaccctttaa gaacatcctg tctaaaatta aaccattaaa tgtgcttaat
1081 cttttatcaa actgtgattg gaccttcatg ggcgtcgtgg aactggtagt gctcctggca
1141 gaactgtttg atgtgttctg gaccccacca gacatttcaa gcttcattgc atctttacta
1201 cctgattttc atctacaagg cccagaagac ctagccaggg acttagtccc cctcatatta
1261 ggtggcatag gcttagcaat tggttttacg agagacaaaa taacaaaagt gatgaagagt
1321 gccgttgatg ggctgcggtc agcaacgcag ctcggacaat atggactgga gatattctca
1381 attatcaaga aatacttctt tggaggggac caaacagaaa agaccctgcg aggcattgaa
1441 gatgcggtga tagacatgga agtgttgtcc agtaccaatg tgacacaact ggtcaaagat
1501 aagaagttag ccaaagctta catgaatgta ctggacaatg aggaggaaaa agcaagaaag
1561 ctctcagtcc gtagtgctga cccacatata gtgacctctg tcaacaactt gatatcacgc
1621 atctctatgg caagatcagc tctggctaaa gcccaagctg agttgacgtc ccgcccacga
1681 ccagtggtta taatgatgtg cggtcctcct ggtattggaa agactaaggc cgctgagcac
1741 ctagccggcc gactagctgc tgaaatcaga cctggaggta aagttggcct tgtgccccgg
1801 gagtccatag accattggga tggatatcat ggcgaggacg tcttgctctg ggatgactat
1861 ggcatgtcaa agataacaga ggattgtaat aagttacagg ctatagctga tactgcacca
1921 ctgtcactta attgtgacag aatagaaaac aaaggcatgc aattctcttc tgatgcaata
1981 attataacca ccaatgcccc tggcccagcc ccagtcgact ttgtcaactt aggccccgtg
2041 tgtagacgag tggacttttt agtttactgt tctgcacccg agattgaaca aacgcggagg
2101 gctcatccag gtgacaccaa tgccatcaag gatctgttta aaaaggactt ctcacactta
2161 aaaatggaac tggctccaca gggcggcttt gatagtcagg gcaacacacc ttttgggaag
2221 ggtgtcatga aaaccacaac cctcaatagg ctattgatac aggccacagc attagccatg
2281 gagcgacaag atgaattcca actccagggg gccgtctaca actttgacga ggatagagtg
2341 gccgctttca ccaatctagc tcgagctaat ggcctggggc ttataagcat ggcaacatta
2401 ggcaagaagc tgagaagtgt taagtccatg gaaggcttgc gcaacgcact actgggatac
2461 aagattggag agtgcgatat aatctggaac accagggtgt attcagttaa gagtgacggg
2521 agcaacgtca caattaaaga aaagcaggca ccgtcctcac cccaacatca agctatttcc
2581 acagctaccc tggcgctctc tagactgcgg gctgctagag cccttgcgta tgcttcctgt
2641 ttacaaagtg cagtgttgtc aatacttcag gttgccggct ctgccttagt ggtgagcaga
2701 gctgtaaaac gcatgtttgg cacacgcacc gaacagccca ttctggaggg taagcataaa
2761 gaacacaact gcagagtaca ccgtgcagag gccgctggtc atggccccat tggccatgat
2821 ggaatcattg aacgttatgg tctgtgtgag agtgagcagg aaggagaaga tgaccaaact
2881 gtggagttgc ccactgctga caaagaaggc aagaacaaag gcaaaaccaa aaagggccgc
2941 ggacggaaat ccaacttcaa tgcattctct aggcgtggac ttagtgatga ggaatacgag
3001 gagtacaaga aagtaagaga agagaagggt ggcaactaca gcatacaaga gtaccttgag
3061 gaccgccaac gctatgaaga agaactcgct gaggtacaag ctggtggaga cggtggaatc
3121 ggcgaaactg aagctgagat ccgccaccgt gttttctata aatcaaagtc tggcttgaga
3181 aaacaacggc aagaggagcg ccgccagtta ggcctcgtga gcggtactga aatccgcaaa
3241 cgcaaaccca tagactggac cccccccaaa aatgattggt cagaggacac tagaactgtt
3301 aattatgatg aacacatcag ctttgaagcc cccccttcaa tctggagtag agtagttaaa
3361 tttggcagtg gctggggttt ttgggtgagt tcaacagtgt tcatcaccac aacacatgtt
3421 ataccacctg gtgctaaaga gatctttggt gagaacatta gcaatattgc catccatagg
3481 gttggcgaat tcacccaatt ccgtttctcc aagaaaatga ggcctgacct ctctggcatg
3541 gtcctggaag agggatgccc tgagggcaca gtgtgcacca taatgataaa aagagactct
3601 ggagaactgt tgccgctggc tgttcgtatg ggagcagtgg cctcaatgaa gatccaaggg
3661 aagctcatgc atggacagtc agggatgttg ctcaccggtg ctaatgccaa gggcatggac
3721 cttggcacca tacctgggga ttgtggagcg ccctatatcc ataaaagagg gaatgactgg
3781 gtggtttgtg gggtgcatgc agcagccacg aaatcaggca ataccgtggt gtgcgccata
3841 caaggtggtg aaggtgaagc cacgctagag ggtggcgatc aaaataaggg tcattatgca
3901 ggacacccaa tactaagata tggtagtggc ccttcattgt caactaaaac aaagttttgg
3961 aaatcaaacc cccaacctct accccctggt acatatgaac cagcctacct cggtggcaaa
4021 gaccccaggg ttgaaggtgg tccatctttg cagcaagtgt tgcgagacca gctaaaacca
4081 tttgctgaac ctcgtggcag gttgcctgaa gcaggattgc tagaagctgc ggttgaaact
4141 gtcaccaatg caattgaaca ggtcatggac acacctgtgg catggagtta cagcgacgcc
4201 tgcatgtcct tggacaaaac aaccagttct ggctaccctc atcacaaaag gaagaatgat
4261 gactggaacg ggagttcatt tgtgagagaa ttgggagacc aggcagcgca tgctaatagc
4321 atgtatgagc ttggtaaatc tatgaaacca gtgtacacag cagcactcaa ggatgagctt
4381 gttaagccag acaaggtgta caataaaatt aagaaaaggc tactctgggg ggcggacctc
4441 ggcaccgtca tacgtgctgc tagggctttt gggccatttt gtgaagcaat aaagccccat
4501 gtgattaagt tgcccattaa agtgggcatg aatgccatag aagatggacc cttaatttat
4561 gcagaacact ccaaatataa gtatcacttt gatgctgatt acacagcatg ggactcaaca
4621 caaaacaggg agattatgat ggagtccttt aacattatgt gtaaactcac cgctaatccc
4681 tccctggccg cagtggtggc acaggacctg ctctctcctt ctgagatgga tgtcggtgat
4741 tatgtgatca gtgtcaaaga tggtctacca tctggctttc catgcacctc acaagtgaac
4801 agtatcaacc attggatcta cactttgtgt gccttatcag aggttactgg tttggctcct
4861 gatgtaatac agtcacagtc ttacttttca ttttatggtg atgatgaaat agtttcaaca
4921 gatattgaat ttgactcaaa cagactaaca caggtgctaa aagagtatgg tttaaaaccc
4981 acaagacctg ataaaactga tggtccgatc attgtaaggc aacaggttga tggcttggtt
5041 ttccttcggc gcaccatctc gaaggatgcc atcgggtacc agggtcggct tgatcgcaat
5101 tccattgaga gacagctctg gtggacccga gggcccaatc atgatgatcc atttgaaacc
5161 ttggtcccac acacacagag gaaggtccaa ttaatatccc tattaggtga ggctgcactc
5221 catggtgaga aattttatag aaagatagcc agtagggtga tccaggaggt taaagaagga
5281 ggattggaaa tttacatccc tgggtggcag gccatgttcc gctggatgcg attccatgat
5341 ttgagtttgt ggacaggaga ccgcgatctc ctgcccgatt atgtaaatga tgatggcgtc
5401 taaggacgcc ccaacaaaca tggatggcac cagtggtgcc ggccagctgg taccagaggc
5461 aaatacagct gagcctatat caatggagcc agtggctggg gcagcgacag ctgccgcaac
5521 cgctggccaa gttaacatga ttgacccctg gattatgaat aattatgtgc aagccccaca
5581 aggtgaattc accatatcac caaacaacac accaggtgat attctatttg atttacaatt
5641 aggccctcac ctcaacccct ttctatccca tttggctcaa atgtacaatg ggtgggtagg
5701 taacatgaaa gtgaaagtcc tattggcagg taatgctttc acggcaggaa aaattattat
5761 tagttgtata ccccctggtt ttgtctcaca gaatatatct atagcccaag ctacaatgtt
5821 cccccacgtt atagctgatg tcagggtcct ggagcccatt gaggtcccat tggaggatgt
5881 gaggaatgtg ttattccaca ataatgataa cacaccaacc atgagactgg tatgcatgct
5941 ctacaccccc ttgcgtgcca gcggaagctc atctgggaca gacccctttg tgattgctgg
6001 gcgtgtgttg acctgcccta gccctgattt tagcttctta tttttggtgc cccccaatgt
6061 agaacaaaag actaaacctt ttagtgttcc agatctccca ctcaatgttc tatcaaattc
6121 aagggtgccg tcactgataa aattcatgat ggtgtcacag gaccatggac agatggtaca
6181 atttcagaat ggcagggtca cactggatgg acagctccag ggcaccacac caacatcggc
6241 cagccagctc tgcaagatgc gggggacggt ttaccatgcc tccggtggtc aagggctcaa
6301 tttaactgag attgatggca ctccctatca tgcatttgaa agcccagctc ccattggttt
6361 ccctgacata ggagacagtg attggcatat caacgcttca cccgccaccg ctttcggcag
6421 tggcgaaagc gtcaaaagac tagatatgga acagggctct tcatttgccc cacatttggg
6481 tactgtacac tatactaatg ccagctatga agctaacact gacctgatct gctcattgga
6541 gtggctgtcc ccgcctagcg gaggcactcc aaacaaagtc aacccttggg ccattccacg
6601 gtatggttca actttaactg aagctgctca gctagcccca ccaatttacc cccctggctt
6661 tggagaagct atagttttct ttatgtcaga ttttcctata gcaaatggtc aagatgggtt
6721 aagagtgccc tgcactatac cccaagaatt tgtaacccat tttgttaatg aacaagcacc
6781 aacccgtggg gaagctgccc tccttcatta tgttgacccc gacacacacc gcaatttggg
6841 tgagtttaag ttataccctg aaggatttat gacttgtgta ccaaattcta gtggtagtgg
6901 tccccaaacg ctgcctatca atggagtctt cacttttgtc tcttgggttt cccgtttcta
6961 tcaattaaag cctgtgggaa cgaccggacc ggttcgtagg ctaggaatca ggagatcata
7021 atggcccagg caatatttgg agcaatagct gcgacggctg ccggtagcgc tgtgggtgcg
7081 ggcatccagg ctggtactga ggccgcactc caacatcagc ggttccagca ggatttaacg
7141 ttgcagagca acactttcaa acatgacaaa gaaatgctag ggctacaggt tggtgcctcc
7201 actgctcttt tgcaaaacag cctcaacacc cgctacaaca tgctcacaaa tgctggtctc
7261 tcgtcctcag atgcagcacg cgtggtggtt ggcgcgccag ctacacgtgt tgttgactgg
7321 aacggcacca gggtgtcagc accacaatct acagctacca cgttgaggtc tggtgggttc
7381 atgacaatcc caactctgta caagggcaaa caacagcaga aagctccaac tgaaattggc
7441 ttatctaacc caaattatgg ttcatctgtg tcttctaggg ttgctgattg ggtttcctct
7501 caaaattctt ctcgctcatc cttgggcccg tatcacccca gtgctttgca gacaacatgg
7561 gtgaccccac ccggttctag ttctacttct actatttctt ctgtgtctac tgcacctaga
7621 tattttaata ctgataggtt gcctctattc gcaaatatga ggaaa
//