Typing tool
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Typing tool
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Complete norovirus genomes
| OR713748 | GII.13 | |
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| GII.P21 |
ORF1: 1..5100
ORF2: 5081..6709
ORF3: 6709..7440
LOCUS OR713748 7461 bp RNA linear VRL 28-OCT-2023
DEFINITION Norovirus GII isolate Hu/GII/57590/Beijing/04/2009/CHN
nonstructural polyprotein (ORF1), VP1 (ORF2), and VP2 (ORF3) genes,
complete cds.
ACCESSION OR713748
VERSION OR713748.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7461)
AUTHORS Wang,Y., Yu,Y. and Chen,Y.
TITLE Clinical characteristics and genetic diversity of noroviruses in
adults with acute gastroenteritis in Beijing of China of 2008-2009
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7461)
AUTHORS Wang,Y., Yu,Y. and Chen,Y.
TITLE Direct Submission
JOURNAL Submitted (23-OCT-2023) College of Food Science and Technology,
Shanghai Ocean University, 999 Hucheng ring rode, Shanghai 201306,
China
COMMENT ##Assembly-Data-START##
Sequencing Technology :: Sanger dideoxy sequencing
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7461
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="Hu/GII/57590/Beijing/04/2009/CHN"
/isolation_source="Facal samples from adults with acute
gastroenteritis"
/host="Homo sapiens"
/db_xref="taxon:122929"
/country="China"
/collection_date="17-Apr-2009"
/note="genotype: GII.13[P21]"
gene 1..5100
/gene="ORF1"
CDS 1..5100
/gene="ORF1"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="WOJ46534.1"
/translation="MKMASNDASAAAAVNSNNDNAKSSSDGVLSNMAVTFKRALGARP
KQPPPRDKPPRPPRPPTPELVNRIPPPPPNGEDEPTISYNVKEGVSGLPELSTVTQPE
ESSTAFSVPPLSQRENRDAKEPLTGTILEMWDGEIYHYGLYVERGLVLGVHKPPAAIS
LAKVELTPLSLYWRPVYTPQYLISPDTLRKLHGETFPYTAFDNNCYAFCCWVLDLNDS
WLSRRMIQRTTGFFRPYQDWNRKPLPTMDDSKVKKVANVLLCALSSLFTRPIKDIIGK
LKPLNILNILATCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPED
LAVELVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFP
KKDETNELAMVRSIEDAVLDLEAIENNHMTALLKDKDSLATYMRTLDLEEEKARKLST
KSASPDIVGTINALLSRIAAARSLVHRAKEELSSRPRPVVVMISGRPGIGKTHLAREL
AKKIASSLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTC
PLTLNCDRIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYADAPEVEK
AKRDFPGQPDMWKDTFKPDFSHIKLTLAPQGGFDKNGNTPHGKGVMKTLTASSLVARA
SGLLHERLDEYELQGPVPTTFNFDRNKVLAFRQLAAENKYGLVDTMRVGSQLKNVKTM
TELKQALKNISVKKCQLVYGGSTYTLESDGKGNVCVEKVKNTSVQTNNELSGVLHHLR
CARIRYYVKCVQEALYSILQIAGAAFITTRIAKRMNIQNLWSKPQVEDLEETSNKEGC
PKPKDDEEFVISSDDIKTEGKKGKNKTGRGKKHTAFSSKGLSDEEYDEYKRIREERNG
KYSIEEYLQDRDKYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLV
TGSEIRKRNPDDFKPKGKLWADDDRSVDYNEKLNFEAPPSIWSRIVNFGSGWGFWVSP
SLFITSTHVIPQGAQEFFGVPVKQIQIHKSGEFCRLRFPKPIRTDVTGMILEEGAPEG
TVATLLIKRPTGELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGD
CGCPYIYKRGNDYVVIGVHTAAARGGNTVICATQGSEGEAVLEGGDNKGTYCGAPILG
PGNAPKLSTKTKFWRSSTTPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEP
RGKPPKPSVLEAAKKTIINVLEQTIDPPQKWTYAQACASLDKTTSSGHPHHMRKNECW
NGETFTGKLADQASRANLMYEEGKNMTPVYTGALKDELVKTDKVYGKIKKRLLWGSDL
STMVRCARAFGGLMDELKAHCVTLPVRVGMNMNEDGPIIFEKHSRYRYHYDADYSRWD
STQQRAVLAAALEIMVKFSSEPHLAQVVAEDLLSPSVMDVGDFKISINEGLPSGVPCT
SQWNSIAHWLLTLCALSEVTDLSPDIIQANSLFSFYGDDEIVSTDIKLDPEKLTTKLK
EYGLKPTRPDKTEGPLIISEDLDGLTFLRRTVTRDPAGWFGKLDQSSILRQMYWTRGP
NHEDPSETMIPHSQRPIQLMSLLGEAALHGPSFYSKISKLVISELKEGGMDFYVPRQE
PMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
mat_peptide 1..990
/gene="ORF1"
/product="p48"
mat_peptide 991..2088
/gene="ORF1"
/product="NTPase"
mat_peptide 2089..2625
/gene="ORF1"
/product="p22"
mat_peptide 2626..3024
/gene="ORF1"
/product="VPg"
mat_peptide 3025..3567
/gene="ORF1"
/product="Pro"
mat_peptide 3568..5097
/gene="ORF1"
/product="RdRp"
gene 5081..6709
/gene="ORF2"
CDS 5081..6709
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="WOJ46535.1"
/translation="MKMASNDAAPSNDGAASLVPEAINETMPLEPVAGASIAAPVAGQ
TNIIDPWIRTNFVQAPNGEFTVSPRNSPGEILLNLELGPDLNPYLAHLSRMYNGYAGG
VEVQVLLAGNAFTAGKILFAAIPPNFPVDMISPAQITMLPHLIVDVRTLEPIMIPLPD
VRNVFYHFNNQPQPRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPTPDFEFIYLVPP
SVESKTKPFTLPILTISELTNSRFPIPIEQLYTAPNENNVVQCQNGRCTLDGELQGTT
QLLSSAVCSYRGRTVANSGDNWDQNVLQLTYPSGASYDPTDEVPAPLGTQDFSGILYG
VLTQDNVSESTGEAKNAKGIYISTTSGKFTPKIGSIGLHSITENVRPNQQSRFTPVGV
AQNENTPFQQWVLPHYAGALALNTNLAPAVAPTFPGEQLLFFRSRVPCVQGLQGRDAF
IDCLLPQEWVNHFYQEAAPSQADVALIRYVNPDTGRTLFEAKLHRSGFITVSHTGAYP
LVVPPNGHFRFDSWVNQFYSLAPMGTGNGRRRVQ"
gene 6709..7440
/gene="ORF3"
CDS 6709..7440
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="WOJ46536.1"
/translation="MAGAFIAGLAGDMLTSAVGSLTSAGANAINQKLNFDYNKQLQNA
SFQHDKEMLQAQIDATKKLQSEMIAIKHGVLTAGGFSPADAARGAVNAPMTRVLDWSG
TRYYAPNSVQTTSYSGQFTPSPVHRAQVKAPSNSPQRAAAPSSIRSLSTQSTSLGSTS
SGGSSTTSSNSRTADWVQQQRALSPYMQGALQTAYVTPPSSRASSVSSVSTVPKGVLD
SWTPVFNTRRQPLFAHLRKRGESQA"
ORIGIN
1 ttgaagatgg cgtctaacga cgcttccgct gccgctgctg tcaacagcaa caacgacaac
61 gcaaaatctt caagtgacgg agtattatct aatatggctg tcacttttaa acgagccctc
121 ggggcgcggc ccaaacaacc gcccccgagg gacaaaccac caagaccccc gagaccaccc
181 acaccagagt tggttaatag aattccccct cccccaccca acggggagga cgagccaacc
241 atttcttaca acgtcaaaga gggtgtttct ggtttgcctg aactctcaac ggtcacccaa
301 ccggaagaga gctctacggc attcagcgtt ccccctctta gtcagaggga gaacagagat
361 gcaaaggaac ccctaactgg aaccatcctg gagatgtggg acggggagat ctatcattat
421 ggcttatatg tggaacgagg attagtgctc ggtgtgcaca aaccaccagc agccatcagc
481 cttgctaagg ttgagctaac ccccttgtct ttgtactgga gacctgtgta caccccacag
541 tacctcattt cccctgacac tctcagaaag ttgcatgggg agacgttccc ttacacagcc
601 tttgacaaca actgttacgc cttctgctgt tgggttcttg acttgaacga ttcatggctg
661 agcagaagga tgatacagag gacaacgggc ttctttcggc cttaccagga ctggaacagg
721 aaacccctcc ctacgatgga cgactccaaa gtgaagaagg tggccaatgt tctcctctgt
781 gccctctcat cattgtttac tagaccaatt aaggacatta ttggaaagtt gaaaccccta
841 aatatcctca acattctagc cacatgtgat tggacttttg caggcatagt agaatccctg
901 atcctcttgg ctgaactgtt tggagttttc tggacacccc cagatgtgtc tgcaatgatc
961 gctcccttac tgggtgatta tgagctacag gggcccgagg acctcgctgt ggaactcgta
1021 cccgtagtaa tgggagggat aggcttggtg ctgggattca ccaaagagaa aattggcaaa
1081 atgctttcat ctgctgcttc aaccctgagg gcgtgtaaag atctcggagc ttatgggctg
1141 gagatactca agttggtcat gaagtggttc ttcccaaaga aagacgagac aaacgagttg
1201 gcaatggtga gatccatcga ggatgcagtg ttagacctcg aggccattga gaacaaccat
1261 atgacagctc tactcaagga taaggacagc cttgcaacct acatgaggac tcttgacttg
1321 gaggaggaga aggcgaggaa gttgtccacc aaatctgcat caccggacat cgtgggcacg
1381 atcaacgccc tactgtcaag gattgcagct gcccggtctc tagtacacag ggctaaggag
1441 gaactgtcaa gtaggcctcg accggtcgtt gtgatgattt cagggagacc aggtataggg
1501 aagacccatc tagctagaga gttggcaaag aagattgcct cctcactcac aggtgaccag
1561 agggtgggtc tcatcccacg caacggggtc gaccactggg atgcatacaa aggtgaaaga
1621 gtcgtcctct gggacgacta cgggatgagc aaccctatcc acgacgccct cagactccag
1681 gagctcgctg acacctgccc cctcacgctt aactgtgata ggattgaaaa caaaggcaaa
1741 gtctttgaca gtgacgccat aataataacc accaatttag ccaacccagc gccactggat
1801 tatgtcaact ttgaagcttg ctcaagacgt atagacttcc tcgtctatgc tgatgcccct
1861 gaagttgaga aggctaaacg ggacttccca ggtcagccag atatgtggaa ggacaccttc
1921 aaacctgact tctcacacat aaaactgaca ttagccccac agggaggttt tgacaagaat
1981 ggtaacactc ctcatgggaa gggtgtcatg aagaccctca ctgctagttc cctcgttgcc
2041 cgagcatcag ggctcctcca tgagagacta gatgagtatg agctgcaagg cccagttccc
2101 acaacattca acttcgaccg caacaaggtg cttgctttta ggcagctcgc tgctgagaac
2161 aagtacggtc tcgttgacac aatgagggtc ggatcacagc tcaagaatgt caaaaccatg
2221 acagaactca aacaggctct caagaacatc tcagtcaaga aatgccagct tgtgtatggc
2281 gggagcacgt acacactcga atctgatggc aaaggcaatg tgtgtgttga gaaggtgaag
2341 aacacaagtg tgcagactaa caacgaactc tccggcgttt tgcaccacct caggtgtgcc
2401 aggatcaggt actatgtcaa gtgtgtccag gaagctctct actccatctt gcaaattgcc
2461 ggggctgcat tcatcaccac gcgcattgca aagcgcatga acatacaaaa cctctggtcc
2521 aaaccacaag tggaagattt ggaggagact agcaacaagg agggctgtcc aaaacctaaa
2581 gatgatgagg aatttgtcat ctcctctgat gacatcaaaa ctgagggcaa gaaaggaaag
2641 aacaagactg gccgcggtaa gaagcacaca gccttttcca gcaaaggcct cagtgatgag
2701 gagtacgatg aatataagag aatcagagaa gagagaaatg gcaagtactc catagaggaa
2761 tacctacagg acagagacaa atactatgag gaggtggcca tagccagggc gactgaggaa
2821 gatttctgtg aggaagagga ggccaaaatc cggcaaagga tattcagacc aacaaggaaa
2881 caacgcaaag aggaaagggc ctctcttggt ttggttacag gttctgaaat caggaagaga
2941 aacccagatg actttaagcc caaagggaaa ctatgggccg atgatgacag gagtgttgac
3001 tacaatgaga aacttaattt tgaggctcca ccaagcattt ggtcacgaat tgtcaacttt
3061 ggttcagggt ggggcttttg ggtctcgcct agcctcttca taacatcaac ccatgttatt
3121 ccccaaggcg cacaagagtt ctttggggtg cccgtcaaac agatacaaat ccacaagtca
3181 ggtgagtttt gccggcttag gttcccaaaa ccaattagga cagatgtcac gggcatgatc
3241 ttggaggagg gtgctccaga gggcactgtt gccacactcc tcatcaagag accaactggg
3301 gaactcatgc ccttggcagc cagaatgggc acccacgcga ccatgaagat tcagggtcgc
3361 actgttggtg gacagatggg catgctgctc acagggtcta atgctaagag catggatttg
3421 ggtacaactc ctggcgattg tggttgcccc tacatctaca agagagggaa cgactacgtg
3481 gtcatcggag ttcatactgc cgccgctcgt ggagggaaca ccgttatctg cgcaacccaa
3541 ggaagcgagg gtgaggccgt gctagaaggt ggcgacaaca agggaaccta ctgtggagca
3601 ccaatattag gccctggaaa tgcccccaaa cttagtacca aaaccaaatt ctggaggtct
3661 tccaccaccc ccctgccacc cggaacctat gaaccagctt atctgggtgg aaaggaccct
3721 agagtgaaag gtggtccttc actgcaacag gtaatgaggg atcaactaaa accattcact
3781 gagcccagag gcaaaccacc caaaccaagt gtgctagaag ctgccaagaa gactataatc
3841 aatgtgcttg aacagacaat agacccaccc caaaaatgga cgtacgcaca ggcgtgcgcg
3901 tcactagaca agaccacctc cagcggtcac ccccaccaca tgcggaagaa cgaatgttgg
3961 aacggggaga ctttcacagg aaaattggca gaccaagcat caagggctaa cttaatgtat
4021 gaggagggaa agaacatgac cccagtatac acaggagctc tgaaggatga gctggtcaag
4081 actgataagg tctacgggaa gatcaaaaag agactcctgt gggggtcaga cctatcgacc
4141 atggtacggt gtgcacgagc ctttggtggg ctaatggacg agctcaaggc ccattgtgtt
4201 acactaccag tcagagttgg tatgaacatg aatgaagatg gacccataat atttgagaaa
4261 cattccagat acagatacca ttatgatgca gattactccc gttgggactc aacacaacaa
4321 agagcagtgt tggctgcagc tctggaaata atggtaaaat tctcatcaga acctcatctg
4381 gcccaagtag tcgcagaaga cctcttgtcc cccagtgtga tggatgtggg tgatttcaag
4441 atatcaatca acgaggggtt accctccggt gtaccttgca cctcacaatg gaactccatt
4501 gcccactggc tcctcacact atgtgcactg tctgaagtca cagatctgtc ccctgacatc
4561 atccaggcaa actccctatt ttccttttat ggtgatgatg aaatagtgag cacagacatc
4621 aaattagacc cagagaaatt gacaacaaaa ttgaaggaat acgggctaaa accaacccgt
4681 cctgataaaa cagaaggacc cttaattatc tctgaagatt tggatggcct gaccttctta
4741 cggagaacgg tgactcgtga tccggctggg tggtttggca aactggacca aagttcaata
4801 ctcaggcaga tgtactggac caggggaccg aaccatgagg acccctctga aacaatgata
4861 ccacactccc aaagacccat acaactgatg tcactcctgg gtgaagctgc attacatggc
4921 ccatcattct atagtaaaat cagcaaattg gtcatttcag aattgaaaga gggtggaatg
4981 gatttttacg tgcccagaca agaaccaatg tttaggtgga tgagattctc agatttgagc
5041 acgtgggagg gcgatcgcaa tctggctccc agttttgtga atgaagatgg cgtcgaatga
5101 cgccgctcca tcaaatgatg gtgcagctag tctcgtacca gaggccatta atgagactat
5161 gccattggaa cccgttgctg gcgcatctat tgctgcccca gtggcgggac aaactaacat
5221 aattgacccc tggataagaa caaattttgt gcaagccccc aatggagagt ttacagtatc
5281 accaagaaat tcccctggag agattttatt aaatttagag ttaggaccag atttaaatcc
5341 ttatttggcc catttatcaa gaatgtataa cggttatgct ggaggtgttg aggtgcaagt
5401 gctccttgct gggaacgcgt tcacagcagg caagatacta tttgcagcaa tcccacccaa
5461 ctttcctgta gatatgatta gcccagctca aattactatg cttccccact tgattgtaga
5521 tgttaggact ttggaaccta ttatgatacc cttacctgat gttaggaatg tgttttatca
5581 ttttaacaat caacctcaac ctaggatgag attagtggct atgctctaca ccccattgag
5641 atctaatggt tcaggagatg atgtctttac tgtgtcttgt agagtgctga ctaggccaac
5701 ccctgacttt gaattcattt acctagtgcc tccctctgtg gagtccaaga ctaaaccatt
5761 cacacttcca atactgacca tttctgaact aaccaactcc cggtttccca tcccaattga
5821 gcaactgtac acggccccaa acgagaataa tgttgtacag tgtcaaaatg gcaggtgcac
5881 cttggatgga gagcttcagg gcaccaccca gctgttatca agtgcagttt gctcgtacag
5941 gggcaggact gtggccaaca gtggggacaa ttgggaccag aatgtgctcc agctgaccta
6001 cccaagtggt gcaagctatg accccactga cgaagtacca gcacccttgg gcacccagga
6061 cttcagtggg atattgtatg gggtgttaac ccaagacaat gtgagtgaga gtacagggga
6121 ggccaaaaat gctaagggaa tatacatatc taccaccagt ggaaaattca ccccaaaaat
6181 tgggtcaatt ggattgcatt caataactga aaatgtgcgc cccaatcaac aatcacggtt
6241 cacccccgtt ggagtcgctc agaatgagaa cacccccttc cagcaatggg ttctaccaca
6301 ctacgcaggt gctcttgctc taaacaccaa tttggcaccc gctgttgccc cgactttccc
6361 tggcgagcaa ttactgttct tcaggtcccg tgttccatgt gttcaaggcc tgcaggggcg
6421 ggatgctttc atagattgtc tcctgcctca agagtgggtg aatcattttt atcaagaggc
6481 tgctccttcc caagcagacg ttgctcttat caggtatgtc aaccctgata ctggccgcac
6541 gctgtttgag gccaaattgc acagatcagg ttttatcacc gtgtcacaca ctggtgccta
6601 ccctcttgtg gtccctccaa atggtcattt caggtttgat tcttgggtta accaattcta
6661 ctcactcgcc cccatgggaa ctggcaatgg gcgtagaaga gttcaataat ggcaggagca
6721 tttatagctg gtctagccgg tgatatgctg acttctgctg ttggttcgct gacctctgca
6781 ggagccaatg ccattaatca gaaattgaat tttgattata acaaacaact ccaaaatgca
6841 tcctttcaac atgataagga aatgttgcag gcccaaattg atgctacaaa gaaactccag
6901 tcagaaatga ttgcaattaa gcatggggtc ttgaccgcgg gcggcttttc cccagctgat
6961 gcagccagag gggcagtcaa cgccccaatg actcgagtgt tagattggtc agggacacgc
7021 tattatgctc caaattctgt gcaaaccacc agttattctg gacaattcac cccctcgcca
7081 gtccatcggg cgcaagtgaa ggccccttcc aattcacctc agcgggctgc agctccaagc
7141 agtatccgca gcctgtcaac ccaatcaact tctttaggct ccacctcctc aggggggtcc
7201 tctacaacct cctctaattc gaggacagca gactgggtac aacaacaaag ggctcttagc
7261 ccgtacatgc aaggagccct gcagacggca tacgtcacac cgccgtctag tagggcctcc
7321 agtgtgagct ctgtctcaac agtgcccaaa ggggttttgg actcctggac acctgtgttt
7381 aatacacgca ggcagccgct atttgcacac ctcaggaaga ggggggagtc acaggcttag
7441 tgaaaaggat aatcaatgtt t
//