Typing tool
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Typing tool
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Complete norovirus genomes
| OR648672 | GI.5 | |
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|---|---|---|---|
| GI.P5 |
ORF1: 1..5361
ORF2: 5345..6976
ORF3: 6976..7608
LOCUS OR648672 7608 bp RNA linear VRL 14-OCT-2023
DEFINITION Norovirus GI isolate Hu/US/2023/GI.5[P5]/CA-RGDS-1178 nonstructural
polyprotein (ORF1), VP1 (ORF2), and VP2 (ORF3) genes, complete cds.
ACCESSION OR648672
VERSION OR648672.1
KEYWORDS .
SOURCE Norovirus GI
ORGANISM Norovirus GI
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7608)
AUTHORS Pan,C.-Y., Hatada,A., Padilla,T., Wright,C. and Morales,C.
TITLE Direct Submission
JOURNAL Submitted (09-OCT-2023) Viral and Rickettsial Disease Laboratory,
California Department of Public Health, 850 Marina Bay Parkway,
Richmond, CA 94804, USA
COMMENT ##Assembly-Data-START##
Assembly Method :: Geneious Prime v. 2022.0.2; SPAdes v. 3.6
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7608
/organism="Norovirus GI"
/mol_type="genomic RNA"
/isolate="Hu/US/2023/GI.5[P5]/CA-RGDS-1178"
/isolation_source="stool"
/host="Homo sapiens"
/db_xref="taxon:122928"
/country="USA: CA"
/collection_date="Mar-2023"
/note="genotype: GI.5[P5]"
gene 1..5361
/gene="ORF1"
CDS 1..5361
/gene="ORF1"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="WNW60085.1"
/translation="MMASNDAIAATAASKNSASDNSNTIKNRLLAKLKNIGNNNQPIK
IENTHMALGLIGRGPSPAPPVEPPKQQRDRAPRSTAETQQAMGWVEQPLDQNLPTWEE
LSEAEKREIIAQNENWFDAGGLAPASIPSTHERAQDDEPPGHQIRWSANTGVDLGVGD
LTSVAGPAWNMCPMPPMDQRNNGPAKEPLIGDMIEFYEGRIYHYAIYIGQGKTIGVHS
PQAAFSIARITIHPIAAWWRVCYVPSTEQRLNYDQLKELENEPWPYAAVTNNCYEFCC
RIMGVQDNWLERRLISSGRFNHPTQDWSKDTPDFQQDSKLEIVRDAVLAAINGLVSQP
FKNLLGKLKPLNILNLLSNCDWTFMGVVETVILLMELFGVFWNPPDVSGFIASLLPDM
HLQGPEDLARDLIPLILGGIGLAIGFTKDKVTKVMKSAVDGLRAATQLGQYGLEIFAV
LKKYFFGGDQTEKTLKDIEAAVIDMEVISTTAITQLVRDKQSARTYMAILDAEEEKAR
KLSVKNADPHVVSSTNALIARIALARSALAKAQAEMTNRVKPVVIMMCGPPGIGKTRA
AEYLAKRLANEIRPGGKVGLVPREAVDHWDGYHGEEVMLWDDYGMSKIADDCHKLQAI
ADTAPLTLNCDRIEKKGLQFVSDAIVITTNAPGPAPVDFVNLGPVCRRVDFLVYCSAP
EVEQTRRTNPGDTGALKDCFKDDFSHLKMEIAPQGGFDNQGNTPFGKGVMRPTTLNRL
LIQAVALTMERQDEFQMQGPAYDFDADRIAAFTSLARANGLGLIDMAKLGKRLRGVDS
IHGLKNALNGYTITPCSIKWQARIYNIESDGTTVKIKEDTAAQTQRQHTIDTAVLALT
RLRAARAAAYASCIQSAITSILQMAGSALVIHRAVKRMFGTHTNTISLEGPPREHRCR
VHVAKANGGGPIGHDDIIERFGLCETEEEDDGQELKVSLPTATQEGKNKGKTKKGRGR
RANYNAFSRRGLSDEEYEEYKKIREEKNGNYSIQEYLEDRQRYEEEMAEVQAGGDGGI
GETEMEIRHRVFYKSKTKKNRQEERHKLGLVTGSDIRKRKPIDWTPPKNEWADDDREV
DYSEKISFEAPPTLWSRVVKFGSGWGFWVSPTVFITTTHVIPTGAKEFFGEPLDTIAI
HRAGEFTQLRFSRKIRPDLTGMVLEEGCPEGVVCSILIKRDSGELIPLAVRMGAIASM
KIQGRLVHGQSGMLLTGANAKGMDLGTLPGDCGAPYVYKRNNDWVVCGVHAAATKSGN
TVVCAVQAGEGETTLEGGDKGHYAGHEIIKHSKGPALSSKTKFWRSTTEPLPPGVYEP
AYLGGRDPRVKGGPSLQQVLRDQLKPFAEPRGRMPEPGLLEAAVETVTSALEQVMDTP
IPWTYADACQSLDKTTSSGHPYHKRKNDDWNGTAFVGELGEQAAHANNMYEQGKSMKP
LYTAALKDELVKPEKVYQKIKKRLLWGADLSTVIRAARAFGPFCDAIKSHVIKLPIKV
GMNSIEDGPMIYAEHARYKNHFDADYSAWDSTQNRQIMTESFSIMCRLTASPELASVV
AKDLLAPSEMDVGDYIIRVKEGLPSGFPCTSQVNSINHWLITLCALSEITGLSPDVIQ
SQSYFSFYGDDEIVSTDIDFDPARLTQVLKEYGLRPTRPDKSEGPIVLRKQIDGLVFL
RRTISKDAAGFQGRLDRGSIERQLWWTRGPNHDDPNETLIPHQQRKIQLISLLGEASL
HGEKFYRKIAAKVIQEIKTGGLEMYVPGWQAMFRWMRFHDLGLWTGDRNLLPEFVNDD
GV"
mat_peptide 1..1185
/gene="ORF1"
/product="p48"
mat_peptide 1186..2274
/gene="ORF1"
/product="NTPase"
mat_peptide 2275..2877
/gene="ORF1"
/product="p22"
mat_peptide 2878..3291
/gene="ORF1"
/product="VPg"
mat_peptide 3292..3834
/gene="ORF1"
/product="Pro"
mat_peptide 3835..5358
/gene="ORF1"
/product="RdRp"
gene 5345..6976
/gene="ORF2"
CDS 5345..6976
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="WNW60086.1"
/translation="MMMASKDAPPSADGANGAGQLVPEVNNAEPLPLDPVAGASTALA
TAGQVNMIDPWIFNNFVQAPQGEFTISPNNTPGDILFDLQLGPHLNPFLAHLAQMYNG
WVGNMRVRLILAGNAFTAGKVIICCVPPGFQSRTLSIAQATLFPHVIADVRTLEPIEI
PLEDVRNTLYHTNDNQPTMRLLCMLYTPLRTGGGSGGTDAFVVAGRVLTCPSPDFNFL
FLVPPTVEQKTRPFSLPNIPLHLQSNSRVPNPIQSMVISPDQAQNTQFQNGRCTTDGQ
LLGTTPVSASQILKFRGKVSPGSKVINLTELDGSPFLAFEAPAPTGFPDLGTCDWHVE
LSLNSNPQSSGNPIVLRDIQPNSSDFVPHLGSVAVTAAIDTPGDYTGTIQWISQPSNV
TPVPNINLWTIPNYGSSLSEASQLAPVVYPPGFGEAVVYFMSHIPGPNTEHKPNLVPC
LLPQEFITHFVSEQAPPMGEAALIHYVDPDTNRNLGEFKLYPEGVITCVPNGTGPQQL
PLNGVFVFASWVSRFYQLKPVGTASSARGRLGVRR"
gene 6976..7608
/gene="ORF3"
CDS 6976..7608
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="WNW60087.1"
/translation="MAQAIIGAIAASAAGSALGAGIQAGAEAALQSQRFQQDLTLQQN
SFKHDKEMMSYQVEMSNALLAKNLNTRYALLQSGGLSSADAARAVAGAPVTRIVDWNG
TRVAAPNSSATTLRSGGFMSVPIPIQPKQKSSTISGFNNPAYGETMSRVSSWVQSQNS
SVRSIPPFHSSALRTVWVTPPGSTSTSSSVSSVPMGVFNTDRLPLFANRR"
ORIGIN
1 atgatggcgt ctaacgacgc tattgcagct actgctgcta gcaaaaattc tgctagtgac
61 aatagtaata caattaagaa tcgcttatta gcgaaactta aaaatatagg caataacaac
121 cagcctataa aaatagaaaa cactcacatg gccttagggc tcattggtag aggtccatca
181 ccagcccctc ccgttgagcc tcctaaacag cagcgtgacc gtgcaccacg gagtaccgct
241 gagacccaac aggccatggg gtgggttgaa caaccattag accagaactt accaacctgg
301 gaagaattga gtgaagctga gaaacgcgaa atcatagcac agaatgagaa ctggtttgat
361 gctggtggct tggcaccagc atccatcccc agcacacatg agcgtgccca agatgatgaa
421 ccaccaggac accaaataag atggagcgcc aatactggcg ttgatcttgg ggttggagac
481 ctcacctctg ttgctggccc cgcatggaac atgtgtccca tgccaccaat ggatcaacgc
541 aacaacgggc ctgcaaagga accactcatt ggtgacatga ttgagttcta cgaggggcgt
601 atataccact atgccatata catcgggcag ggtaaaacta ttggagtcca ttcaccacag
661 gcagccttct ctatagccag gataacaata caccccatcg ctgcgtggtg gcgagtgtgc
721 tatgtcccaa gcactgaaca gagactaaac tatgaccaac taaaagaact tgaaaatgaa
781 ccatggccgt acgctgcagt caccaacaac tgttatgagt tttgttgtcg catcatgggc
841 gtccaagaca attggcttga gcgtcggctc ataagttcag gccgctttaa tcaccccaca
901 caggactggt ctaaagacac tccagatttc caacaagata gtaaactaga gatagtcagg
961 gatgctgttt tggcagctat aaacggtctg gtttcacaac catttaaaaa tcttttgggg
1021 aagttgaaac ccctgaatat tctcaaccta ctctccaatt gtgactggac tttcatgggg
1081 gttgtggaga ctgtgatcct tctgatggag ctctttggag tattctggaa cccacccgat
1141 gtatctggct ttattgcctc actattacca gacatgcact tgcagggccc tgaggatctg
1201 gctagagact tgataccttt aatactcggt ggcataggac ttgctatcgg gttcactaag
1261 gacaaggtaa caaaagttat gaaaagtgca gtagatggcc tacgggctgc aacccaactt
1321 ggccagtacg gtcttgagat ctttgccgta ctaaagaaat acttctttgg gggtgaccag
1381 acagagaaga cactcaaaga cattgaggcg gcagtgatag atatggaagt catttcaact
1441 actgccataa cacagttggt cagagataag caatcagcta gaacatatat ggccatccta
1501 gatgcagagg aggaaaaggc cagaaagctc tcagtaaaaa atgctgaccc ccatgtagta
1561 tcctctacta atgccctcat tgcacgcata gcgctagccc gttctgctct ggctaaggcg
1621 caggcagaga tgactaatag agtcaaacct gtggtcatta tgatgtgtgg tccaccaggc
1681 attggtaaaa ctcgggcagc agaatacctg gcaaaacggt tagccaatga aatcaggcca
1741 gggggcaagg ttggccttgt accacgtgag gctgtagacc attgggatgg gtaccatggt
1801 gaggaggtca tgttgtggga tgattatggg atgtcgaaga ttgctgatga ctgtcacaag
1861 ttacaggcaa ttgctgacac ggcccctttg acattgaact gtgataggat agagaagaaa
1921 gggctccaat ttgtatctga tgccatagtt ataaccacca atgccccagg tccagcacca
1981 gtggattttg tcaatcttgg tcccgtgtgc cggcgagtgg acttcctcgt ctattgttcg
2041 gcccccgagg tcgaacagac ccgccgcact aatcctggtg acactggggc cctcaaggac
2101 tgcttcaaag atgatttctc acatttaaaa atggagattg ctccccaagg tgggtttgat
2161 aaccagggca ataccccgtt tggcaaaggg gtcatgcgcc caaccacact aaacaggtta
2221 ttaatacagg cagtcgctct caccatggag cggcaagatg agtttcaaat gcaaggacca
2281 gcttatgact ttgatgctga cagaattgca gccttcacca gcttggcacg tgccaatggc
2341 cttggcctta ttgatatggc caaacttggg aaaagactgc ggggtgtaga ttccattcat
2401 ggccttaaga atgcacttaa tgggtacacc ataacgccct gcagcataaa atggcaagca
2461 agaatttaca acatagagtc tgatggcaca acagtaaaaa ttaaagaaga cactgcagca
2521 cagactcaac gccaacacac aattgacaca gcagtgttgg ccctgacccg cttaagagct
2581 gctagggctg cagcatacgc atcatgcata cagagtgcaa ttacatccat tcttcagatg
2641 gcgggctcag cacttgtcat ccatcgggct gtcaaacgca tgtttggcac tcacaccaac
2701 accatctcgc tggaaggccc ccccagagaa caccgttgca gagttcatgt ggcgaaagct
2761 aatgggggcg gcccgattgg acatgatgat ataatagaga gatttggcct gtgtgagact
2821 gaggaagaag atgacggcca ggagctcaaa gtcagcctac ccactgccac ccaagaaggt
2881 aagaacaagg gcaaaacgaa gaaaggcaga ggtaggcgtg ccaattataa cgctttctca
2941 aggagggggc tcagtgatga ggaatatgag gaatacaaga agatcagaga agaaaagaat
3001 ggcaactata gcatacaaga gtaccttgag gacagacagc gttatgaaga agagatggcc
3061 gaagtccagg ctggagggga tggcggcatt ggagagaccg aaatggagat ccggcatcgt
3121 gtcttctata aatccaaaac caaaaagaac cggcaggagg agcgccacaa gttggggctt
3181 gtcactggga gtgatatcag gaagagaaaa ccaattgatt ggacaccccc taaaaatgaa
3241 tgggctgatg atgacaggga agtggattac agtgagaaaa ttagctttga agcaccaccc
3301 acactctgga gccgtgttgt aaagtttggt tctggttggg gattttgggt cagccctaca
3361 gttttcatca ccacaacaca tgtcatcccg acaggtgcaa aagaattctt tggggagcca
3421 ctcgacacta ttgccatcca tcgagctggt gaattcacac agttaagatt ttccagaaag
3481 ataaggcctg acttaaccgg catggttctt gaagaaggtt gcccagaagg tgttgtctgt
3541 tcaatcctca taaaaaggga ctctggagaa ctcatcccat tggctgttcg gatgggcgcc
3601 attgcttcaa tgaagatcca agggcgccta gttcatgggc aatcaggaat gttgctgaca
3661 ggagccaatg ctaagggcat ggaccttggc accctccctg gtgattgtgg ggctccgtat
3721 gtttacaaaa ggaacaatga ttgggtagtc tgtggtgtcc acgccgcagc cacaaaatct
3781 ggaaacacag ttgtgtgtgc agtgcaagcg ggtgaagggg agaccacact ggaaggagga
3841 gacaagggcc attatgccgg acatgaaata attaaacata gtaaggggcc agcactgtct
3901 agtaaaacca aattttggcg gtcaactact gaacccctgc caccaggagt gtacgagcca
3961 gcctaccttg gaggtcgcga ccctagggtt aaaggcggcc cgtcactgca acaggtgtta
4021 agggaccagc tgaagccatt tgctgaaccg cgtgggcgta tgcccgaacc tggcctacta
4081 gaggcggctg ttgagacagt cacgtcagcg ctggagcaag tcatggatac cccaatcccc
4141 tggacctacg ctgatgcgtg ccagtcatta gacaaaacca ccagttctgg ccacccatat
4201 cataagagga aaaatgatga ctggaatggg actgcgtttg tgggggaatt gggagaacag
4261 gcagcccatg caaataacat gtatgaacag ggcaagtcaa tgaaacccct ctacacagcc
4321 gcactcaagg atgaattggt caaacctgag aaagtgtatc aaaagattaa aaagcggctt
4381 ctttggggcg ctgatctctc aacagtgatc cgtgccgcta gagcctttgg cccattttgt
4441 gatgcaataa agtcccatgt cataaagctc cctatcaagg ttgggatgaa ttcaattgag
4501 gatggtccaa tgatttatgc tgagcatgca agatataaaa accactttga tgctgattac
4561 tccgcatggg attcaacaca gaacaggcag atcatgactg agtcattttc aataatgtgt
4621 cgcctaacgg cttcaccaga actggcttca gtggtggcta aagaccttct cgcaccatct
4681 gagatggatg ttggggacta catcataaga gttaaagagg gactcccttc gggcttcccc
4741 tgtacctcac aagttaacag tataaaccat tggctaatta ccctttgtgc tctctctgag
4801 attactggac tctctcctga tgttatacaa tcacagtcat atttctcatt ttatggtgat
4861 gatgaaattg tgtccactga tattgatttt gacccagcac gcctaaccca agtgctcaaa
4921 gaatatggcc ttcgccctac acgcccggac aagagtgagg gaccaatagt gttgagaaag
4981 cagattgatg ggctagtatt tctcaggagg accatatcaa aagatgcagc tggttttcaa
5041 ggccgattag acagaggttc tattgagagg caactttggt ggacccgtgg cccaaaccat
5101 gacgacccca atgagaccct gataccccac cagcaaagaa agatccagct catatcatta
5161 cttggtgagg cctcactcca tggtgaaaaa ttctacagaa aaattgctgc taaggttatc
5221 caagaaatca agactggtgg cttggaaatg tatgtgccag gttggcaggc catgttccgc
5281 tggatgcgct ttcacgacct cggattgtgg acaggagatc gcaatcttct gcccgaattc
5341 gtaaatgatg atggcgtcta aggacgcccc accaagcgca gatggcgcga atggcgccgg
5401 tcagcttgtg ccggaggtta ataatgctga accactgcca cttgatccag tggcgggggc
5461 ttccaccgcc cttgccactg ctggacaagt taatatgatt gacccatgga tctttaataa
5521 ttttgtccag gccccccagg gtgaatttac tatctctcca aataataccc ccggcgatat
5581 tctgtttgat ttacaattag gtccacacct aaatcctttc ctagcacatt tggctcaaat
5641 gtataatggc tgggttggca acatgcgggt caggctcatc ttggccggca atgctttcac
5701 tgctggtaaa gtcataattt gttgtgttcc ccctggtttt caatctagaa ccctttccat
5761 agcccaggcc acactctttc ctcatgtgat agctgatgtg agaactctgg aaccaattga
5821 gatcccttta gaagatgtta ggaacactct ctatcatact aatgacaacc aaccaacaat
5881 gcgcttactg tgcatgctct acacgccact acgcaccggt ggcggctctg gtggcacaga
5941 tgcatttgtt gtggcaggtc gagttttaac ttgccctagc cctgatttca atttcttgtt
6001 cttggtccca cccactgtgg aacagaagac acgccccttt agtttgccca atataccttt
6061 gcacttgcaa tccaattccc gtgtccccaa tcccatacag agcatggtta tttctcctga
6121 tcaggcccag aacacccaat ttcagaatgg ccgctgcacc accgatgggc agctcttggg
6181 cacaacacct gtctcagcta gtcagatttt aaagtttaga ggaaaggtat cacctggttc
6241 taaggttatt aatcttactg agctagatgg ttcccccttc ctggcttttg aggcccctgc
6301 gcccacgggc tttcctgact tgggaacttg tgattggcat gttgaattaa gccttaactc
6361 aaatccccag agctctggca acccgattgt actaagggac atacaaccaa attcttcaga
6421 ttttgtgcca cacttgggca gcgtggctgt cactgcagca attgatacac ctggggatta
6481 tactggtaca atacagtgga tctcccagcc atccaatgtc accccagttc ctaatattaa
6541 cctatggact atccccaact atggatcaag tttgtcagaa gcctcccaac tggcccctgt
6601 agtgtaccct ccggggtttg gtgaagctgt agtgtacttt atgtcccata taccgggccc
6661 aaatactgaa cacaagccta atttggtacc ctgcctactt ccacaagaat tcataactca
6721 ctttgtcagt gaacaagctc cacccatggg tgaggcagct cttatccatt atgtggaccc
6781 agacaccaac cgtaatctag gtgagttcaa actgtatcct gaaggtgtta tcacctgtgt
6841 gccaaatggc actggtccac aacaactccc ccttaatggg gtctttgtct tcgcttcctg
6901 ggtttccaga ttctatcaat taaagcctgt gggaacggcc agttcggcca gaggtaggct
6961 tggagtcaga agataatggc tcaagccatc attggagcca ttgctgcatc tgcggctggg
7021 agtgcccttg gagctggtat ccaagcaggt gctgaggccg ccctccagag ccagagattt
7081 cagcaggacc ttactcttca acaaaattct ttcaaacatg ataaggaaat gatgtcatat
7141 caagttgaaa tgtctaatgc tttgctagct aagaatctta atactcgcta tgctttgctc
7201 caatctgggg gtctatctag tgctgatgct gctcgtgctg tggcaggtgc gcctgttaca
7261 aggattgttg attggaatgg cactagagtg gcagccccga actcctctgc aacaactctc
7321 agatctggtg gatttatgtc tgttcctata cctattcaac ccaagcaaaa gtcctccacc
7381 atctcagggt ttaataatcc agcatatgga gaaactatgt caagagtttc ctcttgggtc
7441 caatcccaaa attcaagtgt taggagtata cctccttttc atagttctgc cctcaggact
7501 gtttgggtta caccaccagg ttcaacttct acttcttcat ctgtttcatc tgtgcctatg
7561 ggcgtgttca acaccgatag gcttccccta ttcgcaaata ggagatag
//