Typing tool
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Typing tool
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Complete norovirus genomes
| OR648469 | GI.3 | |
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| GI.P10 |
ORF1: 1..5397
ORF2: 5381..7015
ORF3: 7015..7659
LOCUS OR648469 7659 bp RNA linear VRL 14-OCT-2023
DEFINITION Norovirus GI isolate Hu/USA/2023/GI.3[P10]/CA-RGDS-1177
nonstructural polyprotein (ORF1) gene, partial cds; and VP1 (ORF2)
and VP2 (ORF3) genes, complete cds.
ACCESSION OR648469
VERSION OR648469.1
KEYWORDS .
SOURCE Norovirus GI
ORGANISM Norovirus GI
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7659)
AUTHORS Pan,C.-Y., Hatada,A., Padilla,T., Wright,C. and Morales,C.
TITLE Direct Submission
JOURNAL Submitted (09-OCT-2023) Viral and Rickettsial Disease Laboratory,
California Department of Public Health, 850 Marina Bay Parkway,
Richmond, CA 94804, USA
COMMENT ##Assembly-Data-START##
Assembly Method :: Geneious Prime v. 2022.0.2; SPAdes v. 3.6
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7659
/organism="Norovirus GI"
/mol_type="genomic RNA"
/isolate="Hu/USA/2023/GI.3[P10]/CA-RGDS-1177"
/isolation_source="stool"
/host="Homo sapiens"
/db_xref="taxon:122928"
/country="USA: CA"
/collection_date="Apr-2023"
/note="genotype: GI.3[P10]"
gene <1..5397
/gene="ORF1"
CDS <1..5397
/gene="ORF1"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="WNW58198.1"
/translation="MMASNDAIAVADVSKNKANTNNENIGSRLMARLRGHLGPQRGET
TTKIKDANMALDLLRRSQTPSPIRCEHPPKDQRDRPPRTVMEVKRSMGWDDESEQKES
TARAWCDLTKEEKEEIMRNNERLFDAGGVTPSTVPSTFERDSSGDTIDEYQTVSWSAT
NGVDIGIGELTTVRGPYWNLCPLPPLDTRNNGPAEEPLIGDMIEFYEGHIFHYAIYIG
QGKTIGVHSPQAAFSIPRITIHPLVAWWRVCYVPTNQQRLTYDQLKELENEPWPYASI
TNNCYEFCCRVMALDDTWLQRKLVTAGKFNHPTQEWSQDTPDFHQDSKLEMVRDAVLS
AINGLVSQPFKNILSKIKPLNLINLLSNCDWTFMGVVELIVLMAELFDVFWTPPDISS
FIASLLPEIHLQGPEDLAKDLVPLILGGIGLAIGFTRDKVTRVMKSAVDGLRSATQLG
QYGLEVFSIIKKYFFGGDQTERTLRGIEDAVIDMEVLSSTNVTQLVRDKKLAKAYMNV
LDNEEEKARKLSVRNADPHIVTSVNNLISRISMARSALAKAQAEMTSRIRPVVIMMCG
PPGIGKTKAAEHLASRLANEIRPGGKVGLVPRESIDHWDGYHGEEVLLWDDYGMSKIT
EDCNKLQAIADTAPLSLNCDRIENKGMQFVSDAIIITTNAPGPAPVDFVNLGPVCRRV
DFLVYCSAPEIEQMRRAHPGDTNAIKDLYKKDFSHLKMEIAPQGGFDNQGNTPFGKGS
MKTTTLNRLLIQATALTMERQDEFQLQGAVYNFDEDRVAAFTSMARANGLGLISMATL
GKKLRSVKTMEGMQNALVGYKIEECDIIWNTRTYSIKSDGKTVTVREKQSPSSAQHQA
VCTATLALSRLRAARALAYASCFQSAVLSVLQMAGSAVVVGRAVKRMFGTRTDQPTLE
GGHKEHNCRVHRAEAAGHGPIGHDGVIERYGLCESEQEDGDEQTLELPTANKEGKNKG
KTKKGRGRKSNFNAFSRRGLSDEEYEEYKKIREEKSGNYSIQEYLEDRQRYEEELAEV
QAGGDGGIGETEAEIRHRVFYKSKAGMRKQRQEERRQLGLVSGSEIRKRKPIDWTPPK
NDWSEDTRTVNYDEHISFEAPPSIWSRVVKFGSGWGFWVSSTVFITTTHVIPPGCKEV
FGEDLKNVAIHRVGEFTQFRFSKKMRPDLSGMVLEEGCPEGTVCTIMIKRDSGELLPL
AVRMGAVASMKIQGKLMHGQSGMLLTGANAKGMDLGTIPGDCGAPYVHKRGNDWVVCG
VHAAATKSGNTVVCAIQGGEGEATLEGGGQNKGHYAGHPILRYGNGPSLSTKTKFWKS
TPQPLPPGTYEPAYLGGRDPRVEGGPSLQQVLRDQLKPFAEPRGRLPEAGLLEAAVET
VTNAIEQVMDTPVAWSFNDACMSLDKTTSSGHPHHKRKNDDWNGTAFVRELGDQAAHA
NNMFELGKPMKPVYTAALKDELVKPDKVYNKIKKRLLWGADLGTVIRAARAFGPFCEA
IKPHVIKLPIKVGMNAIEDGPLIYAEHAKYKYHFDADYTAWDSTQNREIMMESFNIMC
KLTANPSLAAVVAQDLLSPSEMDVGDYVISVKDGLPSGFPCTSQVNSINHWILTLCAL
SEVTGLSPDVLQSQSYSSFYGDDEIVSTDVEFDPIKLTQVLKEYGLKPTRPDKSDGPI
VVKQQVDGLVFLRRTISKDAIGYQGRLDRNSIERQLWWTRGPNHDDPFETLVPHPQRK
VQLISLLGEAALHGEKFYRKIASRVIQEVKEGGLEIYIPGWQAMFRWMRFHDLSMWTG
DRDLLPDYVNDDGV"
mat_peptide <1..1212
/gene="ORF1"
/product="p48"
mat_peptide 1213..2301
/gene="ORF1"
/product="NTPase"
mat_peptide 2302..2901
/gene="ORF1"
/product="p22"
mat_peptide 2902..3321
/gene="ORF1"
/product="VPg"
mat_peptide 3322..3864
/gene="ORF1"
/product="Pro"
mat_peptide 3865..5394
/gene="ORF1"
/product="RdRp"
gene 5381..7015
/gene="ORF2"
CDS 5381..7015
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="WNW58199.1"
/translation="MMMASKDAPTSMDGTSGAGQLVPEANTAEPISMEPVAGAATAAA
TAGQVNMIDPWIMNNYVQAPQGEFTISPNNTPGDILFDLQLGPHLNPFLSHLAQMYNG
WVGNMRVKVLLAGNAFTAGKIIISCIPPGFASQNISIAQATMFPHVIADVRVLEPIEV
PLEDVRNVLFHNNDNSPTMRLVCMLYTPLRASGSSSGTDPFVIAGRVLTCPSPDFSFL
FLVPPNVEQKTKPFSVPNLPLNTLSNSRVPSLINAMMISRDHGQMVQFQNGRVTLDGQ
LQGTTPTSLSQLCKIRGKVFLANGGNGLNLTELDGSAYHAFESPAPIGFPDIGDCDWH
MNAIATSNFTGSNDEHQILVKQEATFAPHLGHVQADHLPEVANTDLMVSLSWISPVSD
QHRHDVDPWVIPRYGSTLTEAAQLAPPIYPPGFGEAIVFFMSDFPVVSGVNGMRVPCT
LPQEYVAHFVNEQAPTRGEAALLHYVDPDTHRNLGEFKIYPEGFMTCVPNSSGTGPQT
LPINGVFTFVSWVSRFYQLKPVGTAGPARRLGIRRS"
gene 7015..7659
/gene="ORF3"
CDS 7015..7659
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="WNW58200.1"
/translation="MAQAIFGAIAATAAGSAVGAGIQAGTEAALQHQRFQQDLTLQSN
SFKHDKEMIGLQVGASTALLQNSLNTRYNLLTQAGMSTADAARAVVGAPTTRVVDWNG
TRIAAPMSSATTLRSGGFMTVPTLYRGSKTNSQLSSGFSNANYLPSSASRTSEWVSSQ
NSSRSSLGPYHPNALQTAWVTPPGSTSTSSLSSASTAPRYFNTDRLPLFANLRK"
ORIGIN
1 atgatggcgt ctaacgacgc tattgccgtt gctgatgtca gcaaaaacaa agctaacacc
61 aacaatgaaa acatcgggtc tcgccttatg gcgagactcc gtgggcattt aggcccacag
121 cgtggtgaaa ccaccacaaa gatcaaggat gccaatatgg cattagatct gctacgccgg
181 tcacaaacac cctcccctat ccggtgtgaa caccccccca aagaccaaag ggaccgcccg
241 ccacggactg tcatggaggt gaaaaggtcc atgggttggg atgatgaatc agaacaaaaa
301 gagagcacag ccagggcatg gtgtgacctc acaaaagagg agaaagagga aataatgcga
361 aacaacgaga ggttgtttga tgccggtggg gtgactcctt caactgtgcc tagcacattt
421 gagagagaca gttcaggtga cactatcgat gaatatcaga cggtgtcctg gtctgccact
481 aacggagttg acattgggat tggagaactg acaaccgtcc gtggacctta ctggaattta
541 tgccccctcc caccattgga cacccgaaac aatggccccg cagaggaacc tcttatagga
601 gacatgatag aattttatga aggtcacatc ttccactatg caatctacat tgggcaaggt
661 aaaaccattg gggtccactc accgcaagca gctttttcta tacccaggat caccatccat
721 ccattggtcg catggtggcg tgtatgttat gttcccacca atcaacaacg cctaacatat
781 gaccagttaa aagaactgga gaatgaaccg tggccatatg cctccataac taataactgc
841 tatgaatttt gttgcagggt aatggcactt gatgacacgt ggcttcagag aaaactggtc
901 actgctggaa aatttaacca tcctacacaa gaatggtcac aggatacccc tgacttccac
961 caggattcaa aacttgagat ggtcagggat gccgtgctgt cagcaataaa cggccttgtg
1021 tcacaaccct tcaaaaatat cctatcaaag atcaaacctc taaatctcat caacctcctt
1081 tccaattgtg actggacctt tatgggggtt gtagagttga ttgtactaat ggctgaatta
1141 tttgatgtgt tttggactcc acctgatata tcaagtttta tagcctcact gctaccagaa
1201 atccacttac aaggcccaga agatttggct aaagacctag tccctctcat acttggtggt
1261 attggcttgg caataggctt cacaagggac aaagtcacaa gagtcatgaa gagtgcagtt
1321 gatgggctgc gctcggccac gcagcttggg cagtatggct tggaagtatt ctcaattatt
1381 aagaagtact tctttggagg tgaccaaaca gaacggactt tgcgaggcat cgaggatgcg
1441 gtgatagaca tggaagtgct gtccagcaca aatgtaacac agctggttag ggataagaag
1501 ctagccaaag catacatgaa tgtattggac aatgaagagg aaaaggctag aaaactgtca
1561 gtccgaaatg ccgacccgca catagtgacc tctgtcaaca acttgatatc tcgaatctct
1621 atggcaagat cagcattagc caaggcccag gcagagatga catcccgcat acgccctgtg
1681 gtcataatga tgtgtggccc ccctggtatt ggaaagacaa aggctgctga acacctggcc
1741 agtcgattag caaatgagat caggccaggt ggtaaggtcg gccttgtgcc acgtgagtcc
1801 attgaccact gggacggtta tcatggtgag gaggttctac tttgggatga ttatggtatg
1861 tcaaagatca ctgaagattg caacaagttg caagcaattg cggacaccgc accactttcc
1921 cttaattgcg acaggattga gaataagggt atgcaatttg tctcagatgc aatcattata
1981 accaccaatg cacctggtcc ggccccagtt gactttgtaa atcttgggcc cgtatgcaga
2041 cgagtagact tcctggttta ctgttctgcc ccagagattg aacagatgcg gagagcgcat
2101 ccaggtgaca ccaatgcaat caaggattta tataaaaagg atttctcaca tttgaagatg
2161 gaaatagccc cccagggggg ctttgacaat caaggtaaca caccatttgg gaagggctcc
2221 atgaagacca ccacactcaa tagattgctc atacaggcca cagctctgac catggaaagg
2281 caggatgagt tccaattaca gggagcagtc tacaattttg acgaggatag agtggctgcc
2341 ttcactagca tggcccgagc caatggtttg gggcttatca gcatggcaac tctaggaaag
2401 aaattgagaa gtgtcaagac catggaggga atgcaaaatg cgctagtggg ttacaaaatt
2461 gaagaatgtg atataatctg gaacacccga acctactcaa tcaagagtga tggtaaaact
2521 gtcacagtta gagagaagca aagtccatcg tcagcccagc atcaagccgt ttgtacggcc
2581 acccttgccc tgtccaggtt gcgtgcagcc cgggcgctgg cttacgcctc ttgttttcag
2641 agtgcagtct tatctgtact ccagatggct ggctctgctg tggtagtagg tagagcagtc
2701 aaacgcatgt tcggcacgcg cacagatcaa ccaactcttg aaggtggcca caaggaacac
2761 aattgtaggg tccaccgcgc agaggccgca ggccatggcc ccataggaca cgacggtgtc
2821 attgagcgtt atggcttgtg tgaaagtgaa caagaagatg gagatgagca aacattagaa
2881 ctgccaactg ctaataagga gggcaagaac aagggcaaaa ccaaaaaggg ccgaggccgt
2941 aagtccaact tcaatgcctt ctcaaggcgt ggccttagtg atgaggagta tgaggaatat
3001 aaaaagatca gggaagaaaa gagtggcaat tacagcatcc aagaatacct cgaggaccgc
3061 cagcgatatg aagaagaatt agcagaagtc caggctggtg gtgatggtgg gataggtgag
3121 actgaagcag aaatccgcca tagggtgttc tataaatcca aagctggtat gaggaaacag
3181 cgccaagagg aacggcgaca attagggctt gttagcgggt ctgagattcg caagcgtaag
3241 cccatagact ggacccctcc caaaaatgat tggtctgagg atacaagaac agttaattat
3301 gatgaacata tcagctttga agccccacca tcaatatgga gcagagttgt gaagtttggg
3361 agtggatggg gtttctgggt tagttcaaca gtcttcatca ccaccactca tgtaatcccg
3421 ccaggctgta aagaggtctt tggagaggat ctcaaaaacg tggccattca cagggttggt
3481 gagttcaccc aattccgctt ctccaagaag atgagacctg accttagtgg tatggtattg
3541 gaagaaggtt gcccagaagg cacagtctgc accataatga tcaaaagaga ctcaggtgag
3601 ttgttaccac tagccgtgcg catgggtgcg gtggcgtcaa tgaaaatcca agggaaactt
3661 atgcatgggc agtcagggat gctcctcacc ggagccaatg ctaagggcat ggatcttggg
3721 actatacctg gggactgcgg agcaccatac gtgcacaaga gagggaatga ttgggttgtc
3781 tgtggcgtac atgcagcagc cacgaagtca ggcaacactg tggtgtgcgc catacaaggt
3841 ggagaaggtg aggccactct tgagggcggt ggccagaata aaggccacta tgcaggacat
3901 cccatactca ggtatggtaa tgggccctca ttatcaacta aaaccaagtt ctggaagtca
3961 actccacaac cactgccccc tggaacatat gagccagcct accttggtgg gagggaccca
4021 agagtggaag ggggcccatc actacaacaa gttttgaggg accagctcaa accctttgct
4081 gagccccgcg gtaggttgcc tgaggcaggt cttttggagg ctgcagtgga aacagtcacc
4141 aacgccattg aacaagttat ggacacacca gtggcctgga gttttaatga tgcatgcatg
4201 tccctagata agaccaccag ttctggccat ccccaccata agaggaagaa tgatgattgg
4261 aatggcaccg catttgtgcg tgagctgggg gatcaggcag cccatgctaa taatatgttt
4321 gaacttggaa aacctatgaa acctgtgtac actgcagcac tgaaggatga gcttgttaaa
4381 ccagacaagg tgtacaataa gatcaagaag aggctgctgt ggggagcaga ccttggcacg
4441 gtcattcgcg ccgctagagc ttttggtcca ttttgtgaag ccataaaacc tcatgtcata
4501 aagttaccta tcaaagttgg tatgaatgct attgaagatg gccccttaat ttatgcagaa
4561 catgccaaat acaaatacca ctttgatgct gattacacag cctgggactc cactcaaaac
4621 agggagatta tgatggagtc ctttaacatc atgtgtaagc tcactgctaa cccttctctg
4681 gccgcggtgg tggctcaaga cttactttct ccttctgaaa tggacgttgg ggactatgtg
4741 atcagtgtaa aggacggcct gccatcaggc ttcccgtgca cctcacaagt taacagtata
4801 aaccattgga tcctcaccct atgtgcattg tcagaagtca ccgggctttc cccagatgtg
4861 ctacagtcac aatcatactc ctctttctat ggggatgacg agatagtctc cacagatgtt
4921 gaatttgacc caattaaatt gacacaggta cttaaagaat atggtctaaa acccacaagg
4981 cccgacaagt ctgatggtcc catagtagtc aagcaacaag tggacggcct cgtttttctt
5041 cggcgaacta tctcaaaaga cgccattggc taccagggtc gtctagaccg aaactccatt
5101 gagaggcagc tttggtggac gcgtggaccc aaccatgatg atccgtttga gaccctggtt
5161 ccacacccgc agaggaaagt tcaactaata tctctgcttg gcgaggccgc tctccatggt
5221 gagaagttct acaggaagat agcaagcaga gtcattcaag aagttaaaga aggggggtta
5281 gaaatctaca ttcctgggtg gcaggccatg ttccgctgga tgcgtttcca tgatctgagc
5341 atgtggacgg gggatcgcga tctcctgccc gattatgtaa atgatgatgg cgtctaagga
5401 cgccccaaca agcatggatg gcaccagtgg tgccggccag ctggtaccag aggcaaatac
5461 agctgagcct atttcaatgg aaccagtagc tggggctgca acagcagccg caactgctgg
5521 acaagtaaat atgattgacc cctggataat gaataattat gtacaagctc ctcaagggga
5581 gttcaccatt tcgcccaaca atactcctgg tgatatttta tttgatttac agttgggccc
5641 gcatctcaat cctttcttgt cccacttagc tcaaatgtac aatggctggg tcggaaacat
5701 gagagtgaag gtgcttctgg ctggcaatgc ctttacggct gggaaaatta taattagttg
5761 cataccccct ggctttgctt cacaaaacat ttccatagcc caggctacaa tgttccctca
5821 tgtcattgca gatgtcaggg tgcttgaacc tatagaagtt ccccttgaag atgtcagaaa
5881 tgtgctcttt cataataatg ataattcccc tactatgaga ttggtctgca tgttatacac
5941 acctcttagg gctagtggta gctcatcagg tactgatcca tttgtcattg caggtcgggt
6001 cttgacttgc ccgagcccag attttagctt tttgtttctg gtccccccga atgtagaaca
6061 gaaaactaag cccttctctg tgcccaacct gccactaaac acactctcca actcaagggt
6121 tccttcactt atcaatgcta tgatgatttc tagagatcat gggcagatgg tgcagttcca
6181 aaatggtagg gtaacacttg atggtcagtt gcaaggtaca acccctacct cactgagcca
6241 gctatgcaag attagaggta aagtcttcct tgccaacggg ggtaatggtc tgaacctcac
6301 tgagctggat ggatctgctt atcatgcctt tgaaagtcct gccccaattg ggtttccaga
6361 tattggtgat tgtgattggc atatgaatgc catagctact agcaatttca ctgggtccaa
6421 cgatgaacat caaatacttg tcaaacaaga ggcaacattt gccccccacc ttggtcatgt
6481 gcaggctgac cacctaccag aagtcgccaa cactgacctt atggtgtctt tgagttggat
6541 atcccccgtt tcagatcagc ataggcatga cgtggaccca tgggtcatac cgcgttatgg
6601 ctctaccctc actgaagctg cccaattggc cccgcccatt tatcccccag gatttggtga
6661 agctatagtg ttctttatgt ctgattttcc agtggtgtcg ggtgttaatg gtatgagggt
6721 tccgtgcaca ctacctcagg aatatgtggc ccattttgtg aacgagcagg ctcccactcg
6781 aggtgaggca gctcttttac attatgttga tcccgatact cacagaaacc taggtgagtt
6841 taaaatctat cctgagggct ttatgacctg tgtgcctaat tccagtggaa ccggccctca
6901 gaccttacct attaatggag tcttcacttt tgtctcttgg gtttctcgtt tctatcaatt
6961 aaagcctgtg ggaactgctg gtccagcacg taggcttggc atcagaagat cataatggcc
7021 caagccatct ttggagctat tgccgccact gctgctggca gcgctgtcgg ggctggcatt
7081 caggctggaa ctgaggctgc tctccagcat cagcgttttc aacaggatct taccttacaa
7141 agtaattcct tcaaacatga taaagagatg attggacttc aagttggtgc ctctacagca
7201 ttactacaaa acagtttgaa tactcggtac aatttactga cacaggcagg catgtcaaca
7261 gctgatgcag ccagggctgt ggtgggtgcg ccaaccacgc gagtggtaga ctggaatggc
7321 accagaatag cagcccctat gtcttccgcc accactttga gatcaggtgg cttcatgaca
7381 gtaccaacac tttatagagg ttccaagacc aattcacaat tgtcaagtgg tttttctaat
7441 gctaattatt tgcctagtag tgcatctaga acttctgaat gggtttcctc tcaaaattct
7501 tctagatctt ccctaggacc ttaccaccca aatgcattgc aaactgcttg ggttacccct
7561 ccagggtcaa cctccacctc ttctttatca tctgcttcta cagcaccaag atattttaat
7621 acagataggc ttcctttatt cgcaaattta aggaagtga
//