Typing tool
|
Complete norovirus genomes
OR546399 | GII.8 | ||
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GII.P8 |
ORF1: 1..5100 ORF2: 5081..6694 ORF3: 6694..7467LOCUS OR546399 7486 bp RNA linear VRL 09-JAN-2024 DEFINITION Norovirus GII isolate GII/Hu/TH/2023/GII.8[P8]/B10039 nonstructural polyprotein (ORF1), VP1 (ORF2), and VP2 (ORF3) genes, complete cds. ACCESSION OR546399 VERSION OR546399.1 KEYWORDS . SOURCE Norovirus GII ORGANISM Norovirus GII Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 7486) AUTHORS Chuchaona,W., Vongpunsawad,S., Lawtongkum,W., Thepnarong,N. and Poovorawan,Y. TITLE Acute Gastroenteritis Associated with Norovirus GII.8[P8], Thailand, 2023 JOURNAL Emerg Infect Dis 30 (1), 194-197 (2024) PUBMED 38147526 REFERENCE 2 (bases 1 to 7486) AUTHORS Chuchaona,W., Vongpunsawad,S., Lorthongkham,W., Thepnarong,N. and Poovorawan,Y. TITLE Direct Submission JOURNAL Submitted (13-SEP-2023) Department of Pediatrics, Center of Excellence in Clinical Virology, Chulalongkorn, Phayathai, Bangkok, Bangkok 10330, Thailand COMMENT ##Assembly-Data-START## Sequencing Technology :: Sanger dideoxy sequencing ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..7486 /organism="Norovirus GII" /mol_type="genomic RNA" /isolate="GII/Hu/TH/2023/GII.8[P8]/B10039" /isolation_source="rectal swab" /host="Homo sapiens" /db_xref="taxon:122929" /country="Thailand" /collection_date="14-Jun-2023" /note="genotype: GII.8[P8]" gene 1..5100 /gene="ORF1" CDS 1..5100 /gene="ORF1" /codon_start=1 /product="nonstructural polyprotein" /protein_id="WMY97781.1" /translation="MKMASNDATAAAGNFNIANNSENTPPPIKEEASVLSNVKVGFKK ILGAVPKQPKPPEVKTKDQPRVLVNGKALEVPPPPPNGEDVVYYNSKDDTVYGLPNLT TVSCEGENLPYTVPPLSEREHRAAPEPLPGTILEMWDGEFYHYAIYVSGGKAIGVHKP PAAISLATIQLTPISLYWRPVYVPNYLVHPDTLKSLAGEKFPYTAFNNNCYNFCCWVL DLKDSWLNRRSITRTTGFFKPYQSWNKKPLPTVDDGKIKKVANAVLCALGSLFSKPIK DLIGKLKPLNFLNLLASCDWTFSGVVETVILVAELFGVFWTPPDVSNFIASLVGDFEL QGPEDLAVELVPIIMGGVGMVLGFTAEKIGRMLSSAASTLRACKDLGNYALDILKLVM KWFFPKKEEKAEMETLRAIEDAVLDMEAIGNNHLTALLKDRDSLLTYMKTLDLEEEKA RKLSTKSSSPDIVGTINAILARIAAARSLLHRAKEEMYSRPRPVVVMISGRPGVGKTH MARHLAKSVAGTMSGDQRVGLIPRNGVDHWDAYRGERVVLWDDYGMGNPVKDALALQE LADTCPVTLNCDRIENKGKMFDSEVIIITTNLANPAPLDYVNFEACSRRIDFLVYAEA PTIEKAKKDFPGQPDMWKEHFKADFSHLKLTLAPQGGFDKNGNTPHGKGTMKTLTQGS LTARVAGLVHERKDEFQLQGGELQVYNFDTNKVSAFRKLAADNNYGFLETMRVGSSLK DVKTVEDLKCALKSVSFKECEIIYRNVKYRVSSDGCGKVSIEKLADNNSQTTREIITA VTRLRQARARYYISCFQDLVYTLLQVAGASFVINRIVKKFNWERWVKAPETDEPTPSN DKPDTEEEWEIAPKDVDSEGKKGKNKKGRGRKHTAFSSKGLSDEEYDEFKRLREEKQG RYTIEEYLQDRDRYYEELAVARATEENFCEEEEIKIRQRIFRPTKKQRKEERGVLGLV TGADIRKRKPDDFQPKGRLWADDSRSVDYNEKIEFEAPPSVWSRIVPLGTGWGFWVSS NLLITTTHVLPKGVKELFGVDIKQVQVHKSGEFCRFRFPKPVRPDVSGLVLEEGAPEG TVCSVLIKRSTGEMIPLAVRMGTHASMKIQGRTVGGQMGMLLTGANAKNMDLGTGPGD CGCPYIYKRGNDIVVAGVHTAAARGGNTVICATQGPDGEAVLEGGEDHGTYCGAPILA PGKAPKLSTKTKFWRSSPDSLPPGTYEPAYLGGKDPRVEKGPSLQQVMRDQLKPFTEP RGKPPRPSVLEEAKKTVMNVLEQTIEPAKPWTYSQACASLDKTTSSGSPHHVRKNEHW NGESFTGPLADQASKANLMYEEGKHMDPMYTAALKDELVKTDKIYKKIKKRLLWGSDL GTMVRCARAFGGLLDSMKESCISLPCRVGMNINEDGPLIFEKHSKYTYHYDADYSRWD STQQRAVLSAAMEVMVKFSAEPELAQVVAEDLLAPSRLDVGDFVISVQEGLPSGVPCT SQWNSIAHWILTLSAMSEVSGLSPEVVQANSCFSFYGDDEIVSTDINLDPEKLTRKLR EYGLVPTRPDKTEGPLVITQDLNGLTFLRRTIVRDPAGWFGKLDRDSILRQLYWTRGP NHENPFESMIPHSQRATQLMALLGEASLHGPQFYKKVSKMVINEIKSGGLEFYVPRQE AMFRWMRFSDLSTWEGDRNLAPENVNEDGVE" mat_peptide 1..1005 /gene="ORF1" /product="p48" mat_peptide 1006..2103 /gene="ORF1" /product="NTPase" mat_peptide 2104..2625 /gene="ORF1" /product="p22" mat_peptide 2626..3024 /gene="ORF1" /product="VPg" mat_peptide 3025..3567 /gene="ORF1" /product="Pro" mat_peptide 3568..5097 /gene="ORF1" /product="RdRp" gene 5081..6694 /gene="ORF2" CDS 5081..6694 /gene="ORF2" /note="major capsid protein" /codon_start=1 /product="VP1" /protein_id="WMY97782.1" /translation="MKMASNDAAPSNDGAAGLVPEINHEVMAIEPVAGASLAAPVVGQ LNIIDPWIRNNFVQAPAGEFTVSPRNAPGEFLLDLELGPELNPYLAHLARMYNGHAGG MEVQIVLAGNAFTAGKILFAVIPPGFPYENLSPAQLTMCPHVVVDVRQLEPILLPMPD IRNTFFHYNQSNGPKLRLVAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFEFNFLVPP SVESKTKAFTLPILKISEMTNSRFPIPVDQMYTSRNENIVVQPQNGRVTLDGELQGTT TLQPVSICGFRGTLQTRLADQPNYTYQVHLENLDGSPVDPTDEVPAPLGTPDFQAQLF GVVSQRSSDNATRAHEARVNTNDPTFAPQIAQVRFKSPSHDFFDNEPIKFTPVGISVD SENGYNQWLLPRYGGHLTNNTHLAPSVSPMFPGEQILFFRSFMPGASGHTDGAIDCLL PQEWVAHFYQEAATAQTDVALIRFVNPDSGRVLFEGKLHKQGFITISNSGDHPIVMPA NGYFRFEAWVNQFYSLAPVGTGSGRRRVQ" gene 6694..7467 /gene="ORF3" CDS 6694..7467 /gene="ORF3" /note="minor structural protein; small basic protein" /codon_start=1 /product="VP2" /protein_id="WMY97783.1" /translation="MAGAFLAGLAGDVVSSGIGSLINAGANAVNQKVEYDFNRQLQEA SFKHDKEMLNAQINATTKLQRDMIAIKQGVLTAGGFSPTDAARGSINAPTTKILDWNG SRYWAPGSMRTTAYSGNFTSQGVKQPTPIVRSVKPQVQQSPAPSSVYSVGSVRSQSTQ STQLTGSGTVSRAPTPSTTTTLSRTSEWVRSQNDRLSPFMGGALQTAFITPPSSKASS SSGTVSTVPKEILDSWTPAFNTRRQPLFAHIRKRGESRA" ORIGIN 1 atgaagatgg cgtctaacga cgctaccgct gccgctggca actttaacat tgccaacaac 61 agtgaaaaca ctccccctcc cattaaggaa gaggcgagtg tcctatccaa cgtaaaagtt 121 ggatttaaga aaatattggg ggctgtgccc aagcagccca agccaccaga agtgaaaacc 181 aaagatcagc ccagggtgct ggtcaatggt aaggccttgg aggtaccgcc cccaccacca 241 aatggtgaag acgtggtcta ctataacagc aaggatgaca ccgtgtacgg tctaccaaat 301 ctaacaacag tcagctgtga aggtgaaaac cttccgtaca cagtcccccc tctcagcgag 361 agagagcaca gggcagcacc agaaccatta cctggtacca tactagagat gtgggatggt 421 gaattctacc attatgcgat atatgtctct ggtggcaagg ccataggggt gcacaaaccc 481 ccagctgcaa tcagccttgc cactatccag cttacgccta tatcgcttta ctggaggccc 541 gtttatgtcc ctaattactt ggtccaccct gacacactca agagcttagc cggtgaaaaa 601 ttcccataca ccgcatttaa caacaactgt tacaatttct gttgctgggt tcttgacctg 661 aaagattcgt ggctcaaccg cagatcaata actagaacaa ccggtttctt caagccttat 721 cagtcctgga acaagaaacc acttccgacg gtggatgatg gaaaaatcaa gaaagtcgcc 781 aatgcagtcc tatgtgccct tggttcacta ttctcaaaac ctattaagga cttgatcggg 841 aagctgaaac cactgaattt cttgaatctc ctcgcctcgt gcgactggac cttctccgga 901 gtggttgaga ccgtcatact agttgctgag ctgtttggtg tgttttggac cccccccgac 961 gtgtcgaatt tcatcgcgtc actcgtcggg gattttgagc tgcaaggtcc agaggattta 1021 gctgtggagt tggtgccgat catcatgggc ggtgtcggga tggtgctggg attcaccgcc 1081 gagaagatcg gccgaatgct atcatcggct gcatcgaccc ttagggcctg taaagaccta 1141 ggtaactacg cccttgacat acttaaattg gtcatgaagt ggttcttccc aaagaaggag 1201 gaaaaggcag agatggaaac cttgagggct atagaggatg ctgtcttaga catggaggcg 1261 attgggaata accacctcac tgctctgttg aaagacaggg acagcctcct aacttacatg 1321 aagactctag accttgaaga agaaaaggcg agaaagctat ccacaaaatc atcgtcccct 1381 gacattgtgg gtactatcaa tgccatacta gccagaattg ctgcggctag gtctctcctg 1441 cacagagcca aagaagaaat gtacagcaga cctaggcctg tcgtggtgat gatatcaggg 1501 agaccagggg ttggtaaaac ccatatggct agacacctcg ccaagagtgt ggcgggcacc 1561 atgagtggtg accaaagggt gggcctcatc ccccgcaatg gagttgacca ttgggatgcc 1621 tataggggag aacgagtcgt cttgtgggac gactatggta tgggcaaccc agtgaaggac 1681 gccctcgctc tgcaagaact agcagacact tgtccagtca ctctcaattg tgacaggata 1741 gagaacaaag ggaagatgtt tgacagcgag gtaataatca taacaactaa tttggccaac 1801 cccgccccgc ttgattatgt caactttgaa gcttgttccc gtagaatcga cttcctcgtc 1861 tacgcagaag ccccaactat tgagaaggcg aagaaggatt ttcccgggca accagacatg 1921 tggaaggagc acttcaaagc agacttctcc cacctcaaac tcacactggc cccgcaaggc 1981 ggttttgaca agaacggcaa cacgccacat gggaagggga ctatgaagac cttaacacag 2041 ggttccctca cagcaagagt ggctgggctc gtgcacgaaa ggaaagatga gtttcagtta 2101 cagggtggag agttgcaggt ctacaatttt gacacaaaca aggtatcggc tttcaggaag 2161 cttgctgcag ataacaacta tgggttcctg gagacaatga gagtcggctc ctcactcaag 2221 gacgtcaaga cagtggaaga tcttaaatgt gctcttaaga gtgtcagttt caaagaatgt 2281 gaaataatct acaggaatgt caagtaccgc gtatcatcag acggttgcgg taaggtcagc 2341 atagagaaac tggcagataa caactcccaa acaaccagag agattatcac ggccgtcact 2401 agactacgac aggctcgtgc taggtactac atcagttgct tccaagacct agtctacaca 2461 ctcttgcagg ttgccggagc ctcatttgtc attaacagaa tagtcaagaa gttcaactgg 2521 gaacgatggg tcaaagctcc agaaacagat gaacccacac caagtaatga caagcccgac 2581 actgaagagg aatgggagat cgcccccaaa gatgtggact ctgagggtaa aaagggaaag 2641 aacaagaagg gcaggggacg taagcacact gcgttctcca gcaaagggct cagtgatgag 2701 gagtatgatg aattcaaaag actaagggaa gagaaacagg gccgctacac aatagaggag 2761 tacctccagg acagggaccg gtactatgaa gagctggcag tggcccgggc cactgaggag 2821 aacttctgtg aagaggaaga gataaagatc aggcaaagga tattccgccc caccaaaaag 2881 cagaggaagg aggagcgtgg ggttctggga ctcgtcacag gagcagacat caggaaacgg 2941 aaacccgatg acttccaacc aaaaggaaga ttgtgggcag atgactctag gagcgtcgac 3001 tacaatgaga agatcgagtt tgaggctcct cctagcgtct ggtcaagaat cgtcccgctt 3061 ggaactggtt gggggttctg ggtctcatcc aacttattaa ttaccaccac acatgtgctg 3121 cccaaaggtg ttaaagagct ttttggggtg gatatcaaac aagtccaagt tcacaaatca 3181 ggcgaatttt gcagattcag gttcccaaaa ccagtgaggc cagatgtctc tgggttggtg 3241 ttagaagaag gggcccccga aggcacagtg tgctctgttc tcatcaagag gtctacagga 3301 gagatgatcc ccctcgcagt taggatgggc acccacgcct ctatgaagat tcaggggcgc 3361 actgttggcg gccagatggg catgctgctc actggagcca acgctaagaa catggatttg 3421 ggtaccggcc ccggggattg tggttgcccg tacatataca agaggggcaa tgacatcgta 3481 gtggccggcg tccacacagc agcggcgcgc gggggcaaca cagtcatctg cgcaacccaa 3541 ggacctgatg gtgaggcagt gttggaaggg ggagaggacc acggtactta ctgtggagcc 3601 ccaatactgg cccctggcaa agcgccgaag ctcagcacaa agaccaagtt ttggcgctca 3661 tcccctgatt cccttccccc tgggacgtat gaaccagctt accttggggg caaggacccc 3721 cgtgtggaga aagggccgtc actccaacaa gtgatgcgag accaactcaa acccttcaca 3781 gaacccaggg gcaagccacc taggccgtca gtgctggagg aagccaagaa gacagtcatg 3841 aatgtactgg agcagaccat agaaccagct aagccatgga cctactctca agcctgtgct 3901 tcactggata aaacaacatc cagtggcagt cctcaccatg tcagaaagaa tgaacactgg 3961 aacggggagt cttttactgg gcctcttgca gatcaagcct caaaagccaa cctaatgtat 4021 gaggaaggta aacatatgga ccctatgtac acagcagccc tcaaagacga gctggtaaaa 4081 accgacaaaa tctacaagaa aatcaagaag aggttgttgt gggggtctga tctggggaca 4141 atggtgaggt gtgctcgagc gtttggagga ttgctcgaca gcatgaaaga gagttgcatc 4201 tccttacctt gtagggttgg catgaacata aatgaagatg gaccactcat atttgaaaaa 4261 cactccaaat acacctatca ctatgatgct gattactcta ggtgggactc aacacaacag 4321 agggccgtac tgagtgcagc tatggaggta atggtgaagt tctctgctga gccggaactg 4381 gctcaggtgg ttgccgaaga cctccttgca cccagccgtc ttgacgtggg tgactttgtc 4441 atctccgttc aagaaggtct cccatcgggt gtcccctgca catcacagtg gaactcaatt 4501 gctcattgga ttttgactct tagtgctatg tctgaggtct ctggtctttc ccctgaggtt 4561 gtgcaagcca actcctgttt ctcattctat ggggatgatg agatagtcag cacagacata 4621 aatctggacc cagaaaaact caccaggaaa ctgagggagt atggcctcgt cccaacaagg 4681 ccagataaaa ctgaaggccc acttgtgatt actcaggatt tgaatggtct cacatttctg 4741 aggcgaacca tagtgcggga ccccgcaggc tggtttggaa aactggaccg tgactccatt 4801 ctaaggcagt tatactggac tagaggaccc aaccatgaga acccctttga aagcatgatt 4861 cctcactccc agagagcaac ccagttaatg gcccttcttg gagaagcctc gctgcatggt 4921 ccccagtttt acaagaaggt gagtaaaatg gtaatcaacg agatcaagag tggtggtctg 4981 gagttttacg tgcccagaca ggaggccatg tttagatgga tgagattttc agacctcagc 5041 acgtgggagg gcgatcgcaa tctggctccc gagaatgtga atgaagatgg cgtcgaatga 5101 cgcagctcca tcgaatgatg gcgcggctgg cctcgtacca gagatcaacc atgaggtcat 5161 ggccatagag cctgtagcag gagcttcttt agcagctcct gttgtaggac aacttaatat 5221 aattgatccc tggattagaa ataactttgt acaagcccct gctggagaat tcactgtttc 5281 gcctaggaat gctccaggtg aatttttatt agatttagag ttaggtccag aattgaatcc 5341 ttaccttgct caccttgcac gcatgtataa tgggcatgca ggtggtatgg aggtgcagat 5401 agtgcttgct gggaatgcgt tcacagcggg caaaatattg tttgcagtta taccgcctgg 5461 attcccctat gaaaatttgt cacctgcaca attgaccatg tgcccacatg tagtggtgga 5521 tgtgaggcag cttgaaccaa tcttgctgcc catgccagac atccgcaaca cattcttcca 5581 ttacaaccag agcaacgggc caaaacttag attagtagct atgctttaca cacccctaag 5641 ggctaataat gctggtgatg atgtcttcac agtttcctgc agggttttga ctcgcccatc 5701 accagatttt gaatttaatt ttcttgtccc cccatccgtt gaatctaaga ctaaagcttt 5761 cacccttcca attcttaaga tatctgagat gacaaattca agatttccca taccagttga 5821 ccagatgtac actagtagga atgaaaatat agttgttcaa ccacaaaatg gtagagtgac 5881 acttgatgga gagttacagg gcacaaccac actccaaccg gtgtccattt gtggcttccg 5941 agggacgctg cagaccaggc tggcagatca accaaattac acataccaag tgcatcttga 6001 gaatttggac ggctcacccg ttgacccgac agatgaagtt ccagcccccc tggggacacc 6061 agattttcag gcccagctat ttggagttgt cagccaaagg agtagtgata atgccaccag 6121 ggcacatgag gccagggtca acaccaacga tcctaccttc gcgccccaga tcgcccaggt 6181 gcgtttcaaa tcaccatccc acgacttctt tgacaatgag cccatcaaat tcacaccagt 6241 tggaatcagt gttgatagcg aaaatggtta caaccaatgg ctcctaccca ggtatggtgg 6301 acacctgaca aacaacaccc acctggcccc ctctgtgtcc ccaatgttcc ccggcgagca 6361 gattctcttc ttccgctcgt tcatgccagg tgccagtggt cacactgatg gtgctattga 6421 ctgcctttta ccacaagagt gggttgccca cttctatcag gaggccgcaa ctgcgcaaac 6481 agatgtggct ctgatcagat ttgtgaaccc cgactcaggc agagtgctat ttgaagggaa 6541 gttgcacaag cagggtttta taaccatctc caacagtggg gaccacccca ttgttatgcc 6601 tgctaatgga tacttcagat ttgaggcatg ggtcaaccaa ttttactctc tcgcccccgt 6661 gggaactgga agtgggcgca gaagagttca ataatggctg gagcttttct tgctggtctg 6721 gctggtgatg tggtgtcctc tggcatcggg tcactcatca atgcaggtgc taatgcagtg 6781 aaccaaaagg ttgaatatga cttcaatagg caactccaag aagcttcttt taaacatgac 6841 aaggagatgt tgaatgctca aattaatgcc acaaccaaat tgcaaaggga catgattgcc 6901 attaagcagg gggttttgac cgctggcggc ttttccccca ctgacgctgc aaggggttcc 6961 atcaatgctc caaccaccaa aattcttgac tggaacgggt ctaggtactg ggcaccagga 7021 tcaatgagaa caacagcgta ctctggcaat ttcacatcac agggagttaa gcagcccaca 7081 cccattgtta ggtctgtaaa acctcaagta cagcaatctc ctgccccttc ttctgtttat 7141 tctgtaggtt ctgttaggtc acaatcaaca caatcaaccc aactaacagg gtcagggact 7201 gtatcaaggg cacccacccc ctcaacaacc acaacattgt ccagaacaag tgagtgggtg 7261 aggagccaga atgataggtt gagccccttt atgggaggcg cactccagac agctttcatc 7321 acgcccccat cgagtaaggc ttcatcctca tcaggaacag tctcaaccgt tcctaaagaa 7381 attttggact cctggactcc tgcatttaac acgcgcaggc agccgctctt cgctcacata 7441 cgtaagcgag gggagtcacg ggcttagtga aaagaatgat ttggtt //