Typing tool
|
Complete norovirus genomes
OR546397 | GII.8 | ||
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GII.P8 |
ORF1: 1..5100 ORF2: 5081..6694 ORF3: 6694..7467LOCUS OR546397 7486 bp RNA linear VRL 09-JAN-2024 DEFINITION Norovirus GII isolate GII/Hu/TH/2023/GII.8[P8]/B9256 nonstructural polyprotein (ORF1), VP1 (ORF2), and VP2 (ORF3) genes, complete cds. ACCESSION OR546397 VERSION OR546397.1 KEYWORDS . SOURCE Norovirus GII ORGANISM Norovirus GII Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 7486) AUTHORS Chuchaona,W., Vongpunsawad,S., Lawtongkum,W., Thepnarong,N. and Poovorawan,Y. TITLE Acute Gastroenteritis Associated with Norovirus GII.8[P8], Thailand, 2023 JOURNAL Emerg Infect Dis 30 (1), 194-197 (2024) PUBMED 38147526 REFERENCE 2 (bases 1 to 7486) AUTHORS Chuchaona,W., Vongpunsawad,S., Lorthongkham,W., Thepnarong,N. and Poovorawan,Y. TITLE Direct Submission JOURNAL Submitted (13-SEP-2023) Department of Pediatrics, Center of Excellence in Clinical Virology, Chulalongkorn, Phayathai, Bangkok, Bangkok 10330, Thailand COMMENT ##Assembly-Data-START## Sequencing Technology :: Sanger dideoxy sequencing ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..7486 /organism="Norovirus GII" /mol_type="genomic RNA" /isolate="GII/Hu/TH/2023/GII.8[P8]/B9256" /isolation_source="feces" /host="Homo sapiens" /db_xref="taxon:122929" /country="Thailand" /collection_date="27-Feb-2023" /note="genotype: GII.8[P8]" gene 1..5100 /gene="ORF1" CDS 1..5100 /gene="ORF1" /codon_start=1 /product="nonstructural polyprotein" /protein_id="WMY97775.1" /translation="MKMASNDATAAAGNFNIANNSENTPPPIKEEASVLSNVKVGFKK ILGAVPKQPKPPEVKTKDQPRVLVNDKALEVPPPPPNGEDVVYYNSKDDTVHGLPNLT TVSCEGENLPYTVPPLSEREHRAAPEPVPGTILEMWDGEFYHYAIYVSGGKAIGVHKP PAAISLATIELTPISLYWRPVYVPNYLVHPDTLKSLAGEKFPYTAFSNNCYNFCCWVL DLKDSWLNRRSITRTTGFFKPYQSWNKKPLPTVDDGKIKKVANAVLCALGSLFSKPIK DLIGKLKPLNFLNLLASCDWTFSGVVETVILVAELFGVFWTPPDVSNFIASLVGDFEL QGPEDLAVELVPIIMGGIGMVLGFTAEKIGRMLSSAASTLRACKDLGNYALDILKLVM KWFFPKKEEKAEMETLRAIEDAVLDMEAIGNNHLTALLKDRDSLLTYMKTLDLEEEKA RKLSTKSSSPDIVGTINAILARIAAARSLLHRAKEEMYSRPRPVVVMISGRPGVGKTH MARHLAKSVAGTMSGDQRVGLIPRNGVDHWDAYRGERVVLWDDYGMGNPVKDALALQE LADTCPVTLNCDRIENKGKMFDSEVIIITTNLANPAPLDYVNFEACSRRIDFLVYAEA PTIEKAKKDFPGQPDMWKEHFKADFSHLKLTLAPQGGFDKNGNTPHGKGTMKTLTQGS LTARVAGLVHERKDEFQLQGGELQVYNFDTNKVSAFRKLAADNNYGFLETMRVGSSLK DVKTVEDLKCALKSVSFKECEIIYRNVKYRISSDGCGKVSIEKLADNNSQTTREIITA VTRLRQARARYYISCFQDLVYTLLQVAGASFVINRIVKKFNWERWVKAPETDEPTPNN DKPDTEEEWEIAPKDVDSEGKKGKNKKGRGRKHTAFSSKGLSDEEYDEFKRLREEKQG RYTIEEYLQDRDRYYEELAVARATEENFCEEEEIKIRQRIFRPTKKQRKEERGVLGLV TGADIRKRKPDDFQPKGKLWADDSRSVDYNEKIEFEAPPSVWSRIVPLGTGWGFWVSS NLLITTTHVLPKGIKELFGVDIKQVQVHKSGEFCRFRFPKPVRPDVSGLVLEEGAPEG TVCSVLIKRSTGEMIPLAVRMGTHASMKIQGRTVGGQMGMLLTGANAKNMDLGTGPGD CGCPYIYKRGNDIVVAGVHTAAARGGNTVICATQGPDGEAVLEGGEDHGTYCGAPILA PGKAPKLSTKTKFWRSSPDSLPPGTYEPAYLGGKDPRVEKGPSLQQVMRDQLKPFTEP RGKPPRPSVLEEAKKTVMNVLEQTIEPAKPWTYSQACASLDKTTSSGSPHHVRKNEHW NGESFTGPLADQASKANLMYEEGKHMDPMYTAALKDELVKTDKIYKKIKKRLLWGSDL GTMVRCARAFGGLLDSMKESCISLPCRVGMNINEDGPLIFEKHSKYTYHYDADYSRWD STQQRAVLSAAMEVMVKFSAEPELAQVVAEDLLAPSRLDVGDFVISVQEGLPSGVPCT SQWNSIAHWILTLSAMSEVSGLSPEVVQANSCFSFYGDDEIVSTDINLDPEKLTRKLR EYGLVPTRPDKTEGPLVITQDLNGLTFLRRTIVRDPAGWFGKLDRDSILRQLYWTRGP NHENPFESMIPHSQRATQLMALLGEASLHGPQFYKKVSKMVINEIKSGGLEFYVPRQE AMFRWMRFSDLSTWEGDRNLAPENVNEDGVE" mat_peptide 1..1005 /gene="ORF1" /product="p48" mat_peptide 1006..2103 /gene="ORF1" /product="NTPase" mat_peptide 2104..2625 /gene="ORF1" /product="p22" mat_peptide 2626..3024 /gene="ORF1" /product="VPg" mat_peptide 3025..3567 /gene="ORF1" /product="Pro" mat_peptide 3568..5097 /gene="ORF1" /product="RdRp" gene 5081..6694 /gene="ORF2" CDS 5081..6694 /gene="ORF2" /note="major capsid protein" /codon_start=1 /product="VP1" /protein_id="WMY97776.1" /translation="MKMASNDAAPSNDGAAGLVPEINHEVMAIEPVAGASLAAPVVGQ LNVIDPWIRNNFVQAPAGEFTVSPRNAPGEFLLDLELGPELNPYLAHLARMYNGHAGG MEVQIVLAGNAFTAGKILFAVIPPGFPYENLSPAQLTMCPHVVVDVRQLEPILLPMPD IRNTFFHYNQSNGPKLRLVAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFEFNFLVPP SVESKTKAFTLPILKISEMTNSRFPIPVDQMYTSRNENIVVQPQNGRVTLDGELQGTT TLQPVSICGFRGTLQTRLADQPNYTYQVHLENLDGSPVDPTDEVPAPLGTPDFQAQLF GVVSQRSSDNATRAHEARVNTNDPTFAPQIAQVRFKSPSHDFFDNEPIKFTPVGISVD SENSYNQWLLPRYGGHLTNNTHLAPSVSPMFPGEQILFFRSFMPGASGHTDGAIDCLL PQEWVAHFYQEAATAQTDVALIRFVNPDTGRVLFEGKLHKQGFITISNSGDHPIVMPA NGYFRFEAWVNQFYSLAPVGTGSGRRRVQ" gene 6694..7467 /gene="ORF3" CDS 6694..7467 /gene="ORF3" /note="minor structural protein; small basic protein" /codon_start=1 /product="VP2" /protein_id="WMY97777.1" /translation="MAGAFLAGLAGDVVTSGIGSLINAGANAVNQKVEYDFNRQLQEA SFKHDKEMLNAQINATTKLQKDMIAIKQGVLIAGGFSPTDAARGSINAPTTKILDWNG SRYWAPGSMRTTAYSGNFISQGVKQPTPIVKSVKPQVQQSPAPSSVYSVGSVRSQSTQ STQLTGSGTVSRASTPSTTTTLSRTSEWVRSQNDRLSPFMGGALQTAFITPPSSKASS SSGTVSTVPKDILDSWTPAFNTRRQPLFAHIRKRGESRA" ORIGIN 1 atgaagatgg cgtctaacga cgctaccgct gccgctggca actttaacat tgccaacaac 61 agtgaaaaca ctccccctcc cattaaggaa gaggcgagtg tcctatccaa cgtaaaagtt 121 ggatttaaga aaatattggg ggctgtgcct aagcagccca agccaccaga agtgaaaacc 181 aaagatcagc ccagggtgct ggtcaatgat aaggccttgg aggtaccgcc cccgccacca 241 aatggtgaag acgtggttta ctataacagc aaggatgaca ccgtgcacgg tttaccaaat 301 ctaacaacag tcagctgtga aggtgaaaac ctcccgtaca cagtcccccc tctcagcgag 361 agagagcata gggcagcacc agaaccagta cctggcacca tactagagat gtgggatggt 421 gagttctacc attatgcgat atatgtctct ggtggcaagg ccataggggt gcacaaaccc 481 ccagccgcaa tcagccttgc cactatcgag cttacaccta tatcgcttta ctggaggccc 541 gtttatgtcc ctaattactt ggtccaccct gatacactca agagcttagc tggtgaaaaa 601 tttccataca ctgcatttag caataattgt tacaatttct gttgctgggt tcttgacctg 661 aaagactcgt ggctcaaccg cagatcaata actagaacaa ccggtttctt caagccttat 721 caatcctgga acaagaaacc acttccgaca gtggatgatg gaaaaatcaa gaaagtcgcc 781 aatgcagtcc tgtgtgccct tggttcatta ttctcaaaac ctattaagga cttgatcggg 841 aagctgaagc cattgaattt cttgaatctc ctcgcttcgt gcgactggac cttctctgga 901 gtggttgaga ccgtcatact ggttgctgaa ctgtttggtg tgttttggac cccccccgac 961 gtgtcgaatt tcatcgcgtc actcgtcggg gattttgagc tgcagggtcc agaggattta 1021 gctgtggagt tggtgccgat catcatgggc ggtatcggga tggtgctggg atttaccgcc 1081 gagaagatcg gccgaatgct atcatcagct gcatcgaccc ttagggcctg taaagaccta 1141 ggtaattacg cccttgacat actcaaatta gtcatgaagt ggttcttccc aaagaaggag 1201 gaaaaggcag agatggaaac cttgagggct atagaagatg ctgtcttaga catggaggcg 1261 attggaaata accacctcac tgctctgttg aaagacaggg acagcctcct aacttacatg 1321 aagactctag accttgaaga agaaaaggca agaaaactgt ccacaaaatc atcgtcccct 1381 gacatcgtgg gtactatcaa tgccatacta gccagaattg ctgcggctag gtctctcctg 1441 cacagagcca aagaagaaat gtacagcaga cccaggcctg tcgtggtgat gatatcagga 1501 agaccagggg ttggtaaaac ccatatggct agacacctcg ccaagagtgt ggcgggtacc 1561 atgagcggtg accaaagggt gggcctcatc cctcgcaatg gagttgacca ttgggatgcc 1621 tataggggag aacgagttgt cttgtgggac gactatggca tgggtaaccc agtgaaggat 1681 gctctcgctc tgcaggaact agcagacact tgcccagtca ctctcaattg tgacaggata 1741 gagaacaagg ggaagatgtt tgacagcgag gtaataatta taacaactaa tttggccaac 1801 cccgccccgc ttgattatgt caactttgaa gcttgttccc gcagaatcga cttcctcgtc 1861 tacgcagaag ctccgaccat tgagaaggcg aagaaggatt ttcccgggca accagacatg 1921 tggaaggagc acttcaaagc agacttctct cacctcaaac tcacactggc cccgcaaggt 1981 ggttttgaca agaacggcaa cacgccacat gggaagggga ctatgaagac cttaacacag 2041 ggttccctca cagcaagagt ggctgggctt gtgcacgaaa ggaaagatga gtttcagtta 2101 cagggtggag agttgcaggt ctacaatttt gacacaaaca aggtatcggc tttcaggaag 2161 cttgctgcag acaacaacta tggattcctg gagacaatga gagtcggctc ctcactcaag 2221 gacgtcaaga cagtggaaga tcttaaatgt gcccttaaga gtgtcagttt caaagaatgt 2281 gaaataatct acaggaatgt caagtaccgc atatcatcag acggttgcgg taaggtcagc 2341 atagagaaac tggcagataa caattcccaa acaaccagag agattatcac ggccgtcact 2401 agactacgac aggctcgtgc taggtactac atcagctgct tccaagacct agtctacaca 2461 cttttgcagg ttgccggagc ctcatttgtt attaacagaa tagtcaagaa gttcaactgg 2521 gaacgatggg tcaaggctcc agaaacagat gaacccacac caaataacga caagcccgac 2581 actgaagagg agtgggagat cgcccccaaa gatgtagact ctgagggtaa gaaggggaag 2641 aacaagaagg gcaggggacg taagcacact gcgttctcca gcaaagggct tagtgatgag 2701 gagtatgatg aattcaaaag actaagggaa gagaagcagg gccgctacac aatagaggag 2761 tacctccagg acagggatcg gtactatgaa gagctggcag tggcccgggc cactgaggag 2821 aacttctgtg aagaggaaga gataaagatc aggcaaagga tattccgccc caccaaaaag 2881 cagaggaagg aggagcgcgg ggttctggga cttgtcacag gagcagacat caggaaacgg 2941 aaacccgatg acttccaacc aaaaggaaaa ttgtgggcag atgattctag gagtgttgac 3001 tacaatgaga agatcgagtt tgaagctcct cctagcgtct ggtcaagaat cgtcccgctt 3061 ggaactggtt ggggattctg ggtctcatcc aacttattaa ttaccaccac acatgtgctg 3121 cctaaaggta tcaaagagct ttttggggtg gacatcaaac aagtccaagt tcacaaatca 3181 ggtgaatttt gcagattcag gttcccaaaa ccagtgagac cagatgtctc tgggttggtg 3241 ttagaagaag gggcccccga aggcacagtg tgctctgttc tcatcaagag gtccacagga 3301 gagatgatcc cccttgcagt tagaatgggc acccacgcct ctatgaagat tcaggggcgg 3361 actgttggcg gccagatggg catgctactc actggagcca acgctaagaa catggatttg 3421 ggtaccggcc ctggggattg tggttgcccg tatatataca agaggggcaa tgacatcgtg 3481 gtggccggcg tccacacagc agcggcgcgc gggggcaaca cggtcatctg cgcaacccaa 3541 ggacctgatg gtgaggcagt gctggagggg ggggaggacc acggtactta ctgtggagcc 3601 ccaatactgg cccctggtaa agcgccaaag ctcagcacaa aaaccaagtt ttggcgctca 3661 tcccctgatt cccttccccc tgggacgtat gaaccagctt accttggggg caaggacccc 3721 cgtgtggaga aagggccctc actccaacaa gtgatgcgag accaactcaa acccttcaca 3781 gaacccaggg gcaagccacc taggccgtca gtgctggagg aagccaagaa aacagtcatg 3841 aatgtgctgg agcagaccat agaaccagct aagccatgga cctactctca agcctgtgct 3901 tcattggata aaacaacatc cagtggcagt cctcaccatg tcaggaagaa tgaacactgg 3961 aacggggagt ctttcactgg gcctcttgca gatcaagcct caaaagccaa cctgatgtat 4021 gaggaaggta aacatatgga ccctatgtac acagcagccc tcaaagatga gctggtaaaa 4081 actgacaaaa tctacaagaa aatcaagaag aggttgttgt ggggatctga tctggggaca 4141 atggtgaggt gtgctcgagc gtttggagga ttgctcgaca gcatgaaaga gagttgcatt 4201 tccttacctt gtagggttgg catgaatata aatgaagatg gaccactcat atttgaaaaa 4261 cattccaaat atacctatca ctatgatgct gactactcta ggtgggattc aacacaacag 4321 agggctgtac tgagtgcagc tatggaggta atggtgaagt tctccgctga accggaactg 4381 gctcaggtgg ttgccgaaga cctccttgca cccagccgtc ttgacgtggg tgactttgtc 4441 atctccgtcc aagaaggcct cccatcgggt gtcccctgca cgtcacagtg gaactcaatt 4501 gctcattgga ttttgactct tagtgccatg tctgaggtct ctggtctttc ccctgaggtt 4561 gtgcaagcca attcctgttt ctcattctat ggggatgatg agatagtcag cacagacata 4621 aacctggacc cagaaaaact caccaggaaa ctgagggagt atggcctcgt cccaacaagg 4681 ccagataaaa ctgagggccc acttgtgatt actcaggatt tgaatggtct cacatttctg 4741 aggcgaacca tagtgcggga ccccgcaggc tggtttggaa aactggaccg tgattctatt 4801 ctaaggcagc tatactggac cagaggaccc aatcatgaga acccctttga aagcatgatt 4861 ccccactccc agagagcaac ccaattaatg gcacttcttg gggaagcctc attgcatggt 4921 ccccagttct acaagaaggt gagtaaaatg gtcattaatg agatcaagag tggtggtctg 4981 gagttttacg tgcccagaca ggaggccatg tttagatgga tgagattttc agacctcagc 5041 acgtgggagg gcgatcgcaa tctggctccc gagaatgtga atgaagatgg cgtcgaatga 5101 cgcagctcca tcgaatgatg gcgcggctgg cctcgtacca gagatcaacc atgaggtcat 5161 ggccatagaa cctgttgcag gagcctcttt agcagctcct gtcgtaggac aacttaatgt 5221 aattgatccc tggattagaa ataattttgt acaagcccct gctggagaat tcactgtttc 5281 gcctaggaac gctccaggtg aatttttgtt agatctagag ttaggtccag agttgaaccc 5341 ttatcttgct caccttgcac gcatgtataa tgggcatgca ggtggtatgg aggtgcagat 5401 agtgcttgct gggaatgcgt tcacagcggg caaaatcctg tttgcagtca taccgcctgg 5461 attcccctat gaaaatttgt cacctgcaca attgaccatg tgcccacatg tagtggtgga 5521 tgtgaggcag cttgaaccaa tcttgctgcc catgccagac atccgcaata cattcttcca 5581 ttacaaccag agcaatgggc caaaacttag attagtagct atgctttaca cacccctaag 5641 ggctaacaat gctggtgatg atgttttcac agtttcctgc agggttttga ctcgcccatc 5701 accagacttt gaattcaatt ttcttgtccc cccatctgtt gaatctaaga ctaaagcttt 5761 cacccttcca attcttaaga tatctgagat gacaaattca agatttccca taccagttga 5821 tcagatgtac actagtagga atgaaaatat agttgttcaa ccacaaaatg gcagggtgac 5881 acttgatgga gagttgcagg gcacaaccac actccaaccg gtgtccattt gtggcttccg 5941 agggacgctg caaaccaggc tggcagatca accaaattac acataccaag tgcaccttga 6001 gaatttggac ggctcacccg tcgacccgac ggatgaagtt ccagcccccc tgggtacacc 6061 agatttccag gcccagctat ttggagttgt cagccaaagg agtagtgata atgccaccag 6121 ggcacatgag gctagggtca acaccaacga tcctaccttc gcgccccaga tcgcccaagt 6181 gcgtttcaaa tcaccatccc acgacttctt tgacaatgaa cccatcaaat tcacaccagt 6241 tggaatcagt gttgatagcg aaaatagcta caaccaatgg ctcctaccca ggtatggtgg 6301 acacctgaca aacaacaccc acctagcccc ctctgtgtcc ccaatgttcc ccggcgagca 6361 gattctcttt ttccgctcgt tcatgccagg tgccagtggt cacactgatg gtgctattga 6421 ctgcctttta ccacaagagt gggttgccca cttctatcag gaggccgcaa ctgcgcaaac 6481 agatgtggct ctgatcagat ttgtgaaccc cgacacaggc agagtgctat ttgaagggaa 6541 gttgcacaag cagggtttta taaccatctc caacagcggg gaccacccca ttgttatgcc 6601 tgctaatgga tacttcaggt ttgaggcatg ggtcaaccaa ttttactctc tcgcccccgt 6661 gggaactgga agtgggcgca ggagagttca ataatggctg gagcttttct tgctggtctg 6721 gctggtgatg tggtgacctc tggcattggg tcgctcatca atgcaggtgc taatgcagtg 6781 aaccaaaagg ttgaatatga tttcaatagg caactccaag aagcttcttt taaacatgac 6841 aaagagatgt tgaatgctca aattaatgcc acaaccaaat tgcaaaagga catgattgcc 6901 attaagcagg gggttttgat cgctggcggc ttttccccca ctgatgctgc aaggggttcc 6961 atcaatgctc caaccaccaa aattcttgac tggaacggat ctaggtattg ggcaccagga 7021 tcaatgagaa caacagcata ctctggcaat ttcatatcac agggagttaa gcagcccaca 7081 cccattgtta agtctgtgaa accccaagta cagcaatctc ctgccccttc ctctgtttat 7141 tctgtaggtt ctgttaggtc acaatcaaca caatcaaccc aattaacagg gtcagggact 7201 gtatcaagag catccacccc ctcaacaacc acaacactgt ctagaacaag tgagtgggtg 7261 aggagccaga atgataggtt gagccccttt atgggaggtg cactccagac agctttcatc 7321 acgcccccat cgagtaaggc ttcatcctca tcaggaacag tctcaaccgt ccctaaagat 7381 attttggact cctggactcc tgcatttaac acgcgcaggc agccgctctt cgctcacata 7441 cgtaagcgag gggagtcacg ggcttagtga aaagaatgat ttggtt //