Typing tool
|
Complete norovirus genomes
OR546392 | GII.8 | ||
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GII.P8 |
ORF1: 1..5100 ORF2: 5081..6694 ORF3: 6694..7467LOCUS OR546392 7486 bp RNA linear VRL 09-JAN-2024 DEFINITION Norovirus GII isolate GII/Hu/TH/2018/GII.8[P8]/B5182 nonstructural polyprotein (ORF1), VP1 (ORF2), and VP2 (ORF3) genes, complete cds. ACCESSION OR546392 VERSION OR546392.1 KEYWORDS . SOURCE Norovirus GII ORGANISM Norovirus GII Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 7486) AUTHORS Chuchaona,W., Vongpunsawad,S., Lawtongkum,W., Thepnarong,N. and Poovorawan,Y. TITLE Acute Gastroenteritis Associated with Norovirus GII.8[P8], Thailand, 2023 JOURNAL Emerg Infect Dis 30 (1), 194-197 (2024) PUBMED 38147526 REFERENCE 2 (bases 1 to 7486) AUTHORS Chuchaona,W., Vongpunsawad,S., Lorthongkham,W., Thepnarong,N. and Poovorawan,Y. TITLE Direct Submission JOURNAL Submitted (13-SEP-2023) Department of Pediatrics, Center of Excellence in Clinical Virology, Chulalongkorn, Phayathai, Bangkok, Bangkok 10330, Thailand COMMENT ##Assembly-Data-START## Sequencing Technology :: Sanger dideoxy sequencing ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..7486 /organism="Norovirus GII" /mol_type="genomic RNA" /isolate="GII/Hu/TH/2018/GII.8[P8]/B5182" /isolation_source="feces" /host="Homo sapiens" /db_xref="taxon:122929" /country="Thailand" /collection_date="18-Feb-2018" /note="genotype: GII.8[P8]" gene 1..5100 /gene="ORF1" CDS 1..5100 /gene="ORF1" /codon_start=1 /product="nonstructural polyprotein" /protein_id="WMY97760.1" /translation="MKMASNDATAAAGNFNIANNSENTPPPIKEEASVLSNVKVGFKK ILGAVPKQPKPPEVKTKDQPRVLVNGKALEVPPPPPNGEDVVYYNSKDDTVHGLPNLT TVSCEGENLPYTVPPLSEREHRAAPEPLPGTILEMWDGEFYHYAIYVSGGKAIGVHKP PAAISLATIELTPISLYWRPVYVPNYLVHPDTLKSLAGEKFPYTAFSNNCYNFCCWVL DLKDSWLNRRSITRTTGFFKPHQSWNKKPLPTVDDGKIKKVANAVLCALGSLFSKPIK DLIGKLKPLNFLNLLASCDWTFSGVVETVILAAELFGVFWTPPDVSNFIASLVGDFEL QGPEDLAVELVPIIMGGIGMVLGFTAEKIGRMLSSAASTLRACKDLGNYALDILKLVM KWFFPKKEEKAEMETLRAIEDAVLDMEAIGNNHLTALLKDRDSLLTYMKTLDLEEEKA RKLSTKSSSPDIVGTINAILARIAAARSLLHRAKEEMYSRPRPVVVMISGRPGVGKTH MARHLAKSVAGTMSGDQRVGLIPRNGVDHWDAYRGERVVLWDDYGMGNPVKDALALQE LADTCPVTLNCDRIENKGKMFDSEVIIITTNLANPAPLDYVNFEACSRRIDFLVYAEA PTIEKAKKDFPGQPDMWKEHFKADFSHLKLTLAPQGGFDKNGNTPHGKGTMKTLTQGS LTARVAGLVHERKDEFQLQGGELQVYNFDTNKVSAFRKLAADNNYGFLETMRVGSSLK DVKTVEDLKCALKSVSFKECEIIYRNVKYRISSDGCGKVSIEKLADNNSQTTREIVTA VTRLRQARARYYISCFQDLVYTLLQVAGASFVINRIVKKFNWERWVKAPETDEPTPGN GKPDIEEDWEIAPKDVDSEGKKGKNKKGRGRKHTAFSSKGLSDEEYDEFKRLREEKQG RYTIEEYLHDRDRYYEELAVARATEENFCEEEEIKIRQRIFRPTKKQRKEERGVLGLV TGADIRKRKPDDFQPKGKLWADDSRSVDYNEKIEFEAPPSVWSRIVPLGTGWGFWVSS NLLITTTHVLPKGIKELFGVDIKQVQVHKSGEFCRFRFPKPVRPDVSGLVLEEGAPEG TVCSVLIKRSTGEMIPLAVRMGTHASMKIQGRTVGGQMGMLLTGANAKNMDLGTGPGD CGCPYIYKRGNDIVVAGVHTAAARGGNTVICATQGPDGEAVLEGGEDHGTYCGAPILA PGKAPKLSTKTKFWRSSPDSLPPGTYEPAYLGGKDPRVEKGPSLQQVMRDQLKPFTEP RGKPPRPSVLEEAKKTVMNVLEQTIEPAKPWTYSQACASLDKTTSSGSPHHVRKNEHW NGESFTGPLADQASKANLMYEEGKHMDPMYTAALKDELVKTDKIYKKIKKRLLWGSDL GTMVRCARAFGGLLDSMKESCISLPCRVGMNINEDGPLIFEKHSKYTYHYDADYSRWD STQQRAVLSAAMEVMVKFSAEPELAQVVAEDLLAPSRLDVGDFVVSVQEGLPSGVPCT SQWNSIAHWILTLSAMSEVSGLSPEVVQANSCFSFYGDDEIVSTDINLDPEKLTRKLR EYGLVPTRPDKTEGPLVITQDLNGLTFLRRTIVRDPAGWFGKLDRDSILRQLYWTRGP NHENPFESMIPHSQRATQLMALLGEASLHGPQFYKKVSKMVINEIKSGGLEFYVPRQE AMFRWMRFSDLSTWEGDRNLAPENVNEDGVE" mat_peptide 1..1005 /gene="ORF1" /product="p48" mat_peptide 1006..2103 /gene="ORF1" /product="NTPase" mat_peptide 2104..2625 /gene="ORF1" /product="p22" mat_peptide 2626..3024 /gene="ORF1" /product="VPg" mat_peptide 3025..3567 /gene="ORF1" /product="Pro" mat_peptide 3568..5097 /gene="ORF1" /product="RdRp" gene 5081..6694 /gene="ORF2" CDS 5081..6694 /gene="ORF2" /note="major capsid protein" /codon_start=1 /product="VP1" /protein_id="WMY97761.1" /translation="MKMASNDAAPSNDGAAGLVPEINHEVMAIEPVAGASLAAPVVGQ LNIIDPWIRNNFVQAPAGEFTVSPRNAPGEFLLDLELGPELNPYLAHLARMYNGHAGG MEVQIVLAGNAFTAGKILFAVIPPGFPYENLSPAQLTMCPHVVVDVRQLEPILLPMPD IRNTFFHYNQSNGPKLRLVAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFEFNFLVPP SVESKTKAFTLPILKISEMTNSRFPIPVDQMYTSRNENIVVQPQNGRVTLDGELQGTT TLQPVSICGFRGTLQTRLADQPNYTYQVHLENLDGSPVDPTDEVPAPLGTPDFQAQLF GVVSQRSSDNATRAHEARVNTNDPTFAPQIAQVRFKSPSHDFFDNEPIKFTPVGISVD SENSYNQWLLPRYGGHLTNNTHLAPSVSPMFPGEQILFFRSFMPGASGHTDGAIDCLL PQEWVAHFYQEAATAQTDVALIRFVNPDTGRVLFEGKLHKQGFITISNSGDHPIVMPA NGYFRFEAWVNQFYSLAPVGTGSGRRRVQ" gene 6694..7467 /gene="ORF3" CDS 6694..7467 /gene="ORF3" /note="minor structural protein; small basic protein" /codon_start=1 /product="VP2" /protein_id="WMY97762.1" /translation="MAGAFLAGLAGDVVTSGIGSLINAGANAVNQKVEYDFNRQLQEA SFKHDKEMLNAQINATTKLQRDMIAIKHGVLTAGGFSPTDAARGSINAPTTKILDWNG SRYWAPGSMRTTAYSGNFISQGVKQPTPIVRSVKPQVQQSPAPSSVYSVGSVRSQSTQ STQLTGSGTVSRAPTPSTITTLSRTSEWVRSQNDRLSPFMGGALQTAFITPPSSKASS SSGTVSTVPREILDSWTPAFNTRRQPLFAHIRKRGESRV" ORIGIN 1 atgaagatgg cgtctaacga cgctaccgct gccgctggca actttaacat tgccaacaac 61 agtgaaaaca ctccccctcc cattaaggaa gaggcgagtg tcctatccaa cgtaaaagtt 121 ggattcaaga aaatattggg ggctgtgcct aagcagccca agccaccaga agtgaaaacc 181 aaagatcagc ccagggtgct ggtcaatggt aaggccttgg aggtgccgcc cccaccacca 241 aatggtgaag acgtggttta ctataacagc aaggatgaca ccgtgcacgg tctaccaaat 301 ttaacaacag tcagctgtga aggtgaaaac cttccgtaca cagttccccc tctcagcgag 361 agagagcaca gggcagcacc agaaccatta cctggtacca tactagagat gtgggatggt 421 gagttctacc attatgcgat atatgtctct ggtggcaagg ccataggggt gcacaaaccc 481 ccagccgcaa tcagccttgc cactatcgag cttacaccta tatcgcttta ctggaggccc 541 gtttatgtcc ctaattactt ggtccaccct gacacactca agagcttagc tggtgaaaaa 601 tttccataca ccgcatttag caacaattgt tacaatttct gttgctgggt tcttgacctg 661 aaagactcgt ggctcaaccg cagatcaata actagaacaa ccggtttctt caagcctcat 721 caatcctgga acaagaaacc acttccgacg gtggatgatg gaaaaatcaa gaaagtcgcc 781 aatgcagtcc tgtgcgccct tggttcacta ttctcaaaac ctattaagga cttgatcggg 841 aagctgaagc cactgaattt cttgaatctc ctcgcttcgt gcgactggac cttctccgga 901 gtggttgaga ccgtcatact agctgctgag ctgtttggtg tgttttggac cccccccgac 961 gtgtcgaatt tcatcgcgtc actcgtcggg gattttgagc tgcagggtcc agaggattta 1021 gctgtggagt tggtaccgat catcatgggc ggtatcggga tggtgctggg attcaccgcc 1081 gagaagatcg gccgaatgct atcatcagct gcatcgaccc ttagggcctg taaagaccta 1141 ggcaactacg cccttgacat acttaaattg gtcatgaagt ggttcttccc aaagaaggag 1201 gaaaaggcag agatggaaac cttgagggct atagaggatg ctgtcttaga catggaggcg 1261 attggaaaca atcacctcac tgctctgttg aaagacaggg acagcctcct aacttacatg 1321 aagactctag accttgaaga agaaaaggcg agaaagctgt ccacaaagtc atcgtcccct 1381 gacatcgtgg gtaccatcaa tgccatacta gccagaattg ccgcggctag gtctctcctg 1441 cacagagcca aggaagaaat gtacagcaga cctaggcctg tcgtggtgat gatatcagga 1501 agaccagggg ttggtaagac ccatatggct agacacctcg ccaagagtgt ggcgggcacc 1561 atgagcggtg accaaagggt gggcctcatc ccccgcaatg gagttgatca ttgggatgcc 1621 tacaggggag aacgagttgt cttgtgggac gactatggca tgggtaaccc agtgaaggat 1681 gccctcgctc tgcaagaact agcagacact tgtccagtca ccctcaattg tgacaggata 1741 gagaataagg ggaagatgtt tgacagcgag gtaataatca taacaactaa tttggccaac 1801 cccgccccgc ttgattatgt caactttgaa gcttgttccc gcagaatcga cttcctcgtc 1861 tacgcagaag ccccgaccat tgagaaggcg aagaaggatt ttcccgggca accagacatg 1921 tggaaggagc acttcaaagc agacttctct catctcaaac tcacactggc cccgcaaggc 1981 ggttttgaca agaacggcaa cacgccacat gggaagggga ctatgaagac cttaacacag 2041 ggttccctca cagcaagagt ggctgggctt gtgcacgaaa ggaaagatga gtttcagtta 2101 cagggtggag aattgcaggt ctacaatttt gacacaaaca aggtatcggc tttcaggaag 2161 cttgctgcag acaacaacta tgggttcctg gagacaatga gagtcggctc ctcactcaag 2221 gacgtcaaga cagtggaaga tcttaaatgt gcccttaaga gtgtcagttt caaagagtgt 2281 gaaataatct ataggaatgt taagtaccgc atatcatcag acggttgcgg taaggtcagc 2341 atagagaaac tggcagataa caactcccaa acaaccagag agattgtcac ggccgtcact 2401 agactacgac aagctcgtgc taggtattac atcagctgct tccaggacct agtctacaca 2461 ctcttgcagg ttgccggagc ctcatttgtc attaacagaa tagtcaagaa gttcaactgg 2521 gaacgatggg tcaaggctcc agaaacagat gaacccacac caggtaatgg caagcccgac 2581 attgaagagg attgggagat cgcccccaag gatgtggact ctgagggtaa aaaggggaag 2641 aacaagaagg gcaggggacg taagcacact gcattctcca gcaaagggct tagtgatgag 2701 gagtatgatg aattcaaaag actaagggaa gagaaacagg gccgctacac aatagaggag 2761 tacctccatg acagggaccg gtactatgaa gagctggcag tggcccgggc cactgaggag 2821 aacttctgtg aagaggaaga gataaagatc aggcaaagga tattccgccc caccaaaaag 2881 cagaggaaag aggagcgcgg ggttctggga ctcgtcacag gagcagacat caggaaacgg 2941 aaacccgatg acttccaacc aaaaggaaaa ttgtgggcag atgattctag gagcgtcgat 3001 tacaatgaga agatcgagtt tgaagctcct cctagcgtct ggtcaagaat cgtcccgctt 3061 gggactggtt ggggattctg ggtctcatcc aacttactaa ttaccaccac acatgtgctg 3121 cccaaaggta ttaaagagct ttttggggtg gacatcaaac aagtccaagt tcacaaatca 3181 ggtgaatttt gcagattcag gttcccaaaa ccagtgaggc cagatgtctc tgggttggtg 3241 ttagaagaag gggcccccga aggcacagtg tgctctgttc tcatcaagag gtctacagga 3301 gagatgatcc cccttgcagt taggatgggc acccacgcct ctatgaagat tcaggggcgc 3361 actgttggcg gccagatggg catgctgctc actggagcca acgctaagaa catggatttg 3421 ggtaccggcc ccggggattg tggttgcccg tatatataca agaggggcaa tgacatcgtg 3481 gtggccggcg tccacacagc agcagcgcgc gggggcaaca cggtcatttg cgcaactcaa 3541 ggacctgatg gtgaggcagt gttggaaggg ggagaggacc acggtactta ctgtggagcc 3601 ccaatactgg cccctggtaa agcgccgaag cttagcacaa agaccaagtt ttggcgctca 3661 tcccctgatt cccttccccc tgggacgtat gaaccagctt accttggggg caaggacccc 3721 cgtgtggaga aagggccgtc actccaacaa gtgatgcgag accaactcaa acccttcaca 3781 gaacccaggg gcaagccacc taggccgtca gtgctggagg aagccaagaa gacagtcatg 3841 aatgtactgg agcagaccat agaaccagct aagccatgga cctactctca agcctgtgct 3901 tcattggata aaacaacatc cagtggcagt ccccaccatg tcaggaagaa tgaacactgg 3961 aacggggagt cttttactgg gcctcttgca gatcaagcct caaaagccaa cctgatgtat 4021 gaggaaggta aacatatgga ccctatgtac acagcagccc tcaaggacga gctggtaaaa 4081 actgacaaaa tttataagaa aatcaagaag aggctgttat gggggtctga tctggggaca 4141 atggtgaggt gtgctcgagc gtttggagga ttgctcgaca gcatgaaaga gagttgcatt 4201 tccttacctt gtagggttgg catgaacata aatgaagatg gaccactcat atttgaaaaa 4261 cattccaaat acacctatca ctatgatgct gattactcta ggtgggactc aacacaacag 4321 agggctgtac tgagtgcagc tatggaggta atggtgaagt tctccgctga gccggaactg 4381 gctcaggtgg ttgccgaaga cctccttgca cccagccgtc ttgacgtggg tgactttgtc 4441 gtctctgttc aagaaggtct cccatcgggt gtcccctgta cgtcacagtg gaactcaatt 4501 gctcattgga ttttgactct tagtgctatg tctgaggttt ctggtctttc ccctgaggtt 4561 gtgcaagcca actcctgttt ctcattctat ggggatgatg agatagtcag cacagatata 4621 aatctggacc cagaaaaact caccaggaaa ctgagggaat atggcctcgt cccaacaagg 4681 ccagacaaaa ctgagggccc acttgtgatt actcaggatt tgaatggtct cacatttctg 4741 aggcggacca tagtgcggga ccccgcaggc tggtttggaa aactggaccg tgattccatt 4801 ctaaggcagt tatactggac cagaggaccc aatcatgaga acccctttga aagcatgatt 4861 cctcactccc agagagcaac ccagttaatg gcccttcttg gggaagcctc gttgcatggt 4921 ccccagtttt acaagaaggt gagtaaaatg gtcatcaatg agatcaagag tggtggtctg 4981 gagttctacg tgcccagaca ggaggccatg tttagatgga tgagattttc agacctcagc 5041 acgtgggagg gcgatcgcaa tctggctccc gagaatgtga atgaagatgg cgtcgaatga 5101 cgcagctcca tcgaatgatg gcgcggctgg cctcgtacca gagatcaacc atgaggtcat 5161 ggccatagag cctgttgcag gagcctcttt agcagctcct gtcgtaggac aacttaatat 5221 aattgatccc tggattagaa ataattttgt gcaagcccct gctggagaat tcactgtttc 5281 gcctaggaat gctccaggtg aatttttatt agatctagag ttaggtccag aattgaatcc 5341 ctatcttgct caccttgcac gcatgtataa tgggcatgca ggtggtatgg aggtgcagat 5401 agtgcttgct gggaatgcgt tcacagcggg caaaatactg tttgcagtca taccgcctgg 5461 attcccctat gaaaatttgt cacctgcaca attgaccatg tgcccacatg tagtagtgga 5521 tgtgaggcag cttgaaccaa tcttgctgcc catgccagac atccgcaata cattcttcca 5581 ttacaaccag agcaatgggc caaaacttag attagtagcc atgctttaca cacccctaag 5641 ggctaacaat gctggtgatg atgtcttcac agtttcctgc agggttttga ctcgcccatc 5701 accagatttt gaattcaatt ttcttgtccc cccatctgtt gaatctaaga ctaaagcttt 5761 cacccttcca attcttaaga tatctgagat gacaaattca agatttccca taccagttga 5821 ccagatgtat actagtagga atgaaaatat agttgttcaa ccacaaaatg gcagggtgac 5881 acttgatgga gagctacagg gcacaaccac actccaaccg gtgtccattt gtggcttccg 5941 agggacgctg cagaccaggc tggcagatca accaaattac acataccaag tgcaccttga 6001 gaatttggac ggctcacctg tcgacccgac agatgaagtt ccagcccccc tggggacacc 6061 agattttcag gcccagctat ttggagttgt cagccaaagg agtagtgata atgccaccag 6121 ggcacatgag gctagggtca acaccaacga tcccaccttc gcgccccaga tcgcccaggt 6181 gcgtttcaaa tcaccatccc acgacttctt tgacaatgaa cccatcaaat tcacaccagt 6241 tggaatcagt gttgatagcg aaaacagcta caaccaatgg ctcctaccca ggtatggtgg 6301 acacctgaca aacaacaccc acctggcccc ctctgtgtcc ccaatgttcc ccggcgagca 6361 gattctcttc ttccgctcgt tcatgccagg tgccagtggt cacactgatg gtgctattga 6421 ctgcctttta ccacaagagt gggttgccca cttctatcag gaggccgcaa ctgcgcaaac 6481 agatgtggct ctgattagat ttgtgaaccc cgacacaggc agagtgctat ttgaagggaa 6541 gttacacaag cagggtttta taaccatctc caacagcggg gaccacccca ttgttatgcc 6601 tgctaatgga tacttcaggt ttgaggcatg ggtcaaccaa ttttactctc tcgcccccgt 6661 gggaactgga agtgggcgca gaagagttca ataatggctg gagcttttct tgctggtctg 6721 gctggtgatg tggtgacctc tggcatcggg tcgctcatca atgcaggtgc taatgcagta 6781 aaccagaagg ttgaatatga cttcaatagg caactccaag aagcttcttt taaacatgac 6841 aaggagatgt tgaatgctca aattaatgcc acaaccaaat tgcaaaggga catgattgcc 6901 attaagcatg gggttttgac cgctggcggc ttttccccca ctgatgctgc aaggggttcc 6961 atcaatgctc caaccaccaa aattcttgac tggaacggat ctaggtactg ggcaccagga 7021 tcaatgagaa caacagcgta ctctggcaat tttatatcgc agggagttaa gcagcccaca 7081 cccattgtta gatctgtgaa acctcaagta cagcaatctc ctgccccttc ttctgtttat 7141 tctgtaggtt ctgttaggtc acaatcaaca caatcaactc agttaacagg gtcagggact 7201 gtatcaaggg cacccacccc ctcaacaatc acaacactgt ccagaacaag tgagtgggtg 7261 aggagccaga atgataggtt gagccccttt atgggaggcg cactccagac agctttcatc 7321 acgcccccat cgagtaaggc ttcatcctca tcaggaacag tctcaaccgt tcctagagaa 7381 attttggact cctggactcc tgcatttaac acgcgcaggc agccgctctt cgctcacata 7441 cgtaagcgag gggagtcacg ggtttagtga aaagaatgat ttggtt //