Typing tool
|
Complete norovirus genomes
OR536463 | GII.14 | ||
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GII.P7 |
ORF1: 4..5097 ORF2: 5078..6688 ORF3: 6688..7482LOCUS OR536463 7515 bp RNA linear VRL 04-MAR-2024 DEFINITION Norovirus GII isolate Hu/NL/2021/GII.14/Rotterdam/I129S33_P18-d1765 nonstructural polyprotein (ORF1), VP1 (ORF2), and VP2 (ORF3) genes, complete cds. ACCESSION OR536463 VERSION OR536463.1 KEYWORDS . SOURCE Norovirus GII ORGANISM Norovirus GII Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 7515) AUTHORS Izquierdo Lara,R.W., Villabruna,N., Hesselink,D.A., Schapendonk,C.M.E., Ribo Pons,S., Meier,J.I.J., Goodfellow,I., Dalm,V.A.S.H., Fraaij,P.L.A., van Kampen,J.A., Koopmans,M.P.G. and de Graaf,M. TITLE Intra-host multi-lineage evolution of human Norovirus in immunocompromised individuals: Implications for treatment JOURNAL Unpublished REFERENCE 2 (bases 1 to 7515) AUTHORS Izquierdo Lara,R.W., Villabruna,N., Hesselink,D.A., Schapendonk,C.M.E., Ribo Pons,S., Meier,J.I.J., Goodfellow,I., Dalm,V.A.S.H., Fraaij,P.L.A., van Kampen,J.A., Koopmans,M.P.G. and de Graaf,M. TITLE Direct Submission JOURNAL Submitted (11-SEP-2023) Viroscience, Erasmus Medical Center, Dr. Molewaterplein 40, Rotterdam, Zuid-Holland 3015 GD, Netherlands COMMENT ##Assembly-Data-START## Assembly Method :: Spades v. 3.15.4; BWA-MEM v. 0.7.17 Sequencing Technology :: Illumina ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..7515 /organism="Norovirus GII" /mol_type="genomic RNA" /isolate="Hu/NL/2021/GII.14/Rotterdam/I129S33_P18-d1765" /isolation_source="feaces" /host="Homo sapiens" /db_xref="taxon:122929" /country="Netherlands: Rotterdam" /collection_date="07-Oct-2021" /note="genotype: GII.14" gene 4..5097 /gene="ORF1" CDS 4..5097 /gene="ORF1" /codon_start=1 /product="nonstructural polyprotein" /protein_id="WMX17767.1" /translation="MKMASNDATTAFGSQNSVNDSTNTAPSNKEEVGAFSNFKVGFKK MLGAVPKSTKAPSSDQQCPTVKIGPRTLVVPPEPPNGEDIVQFDAKSETVSGLPDLTT VQNEHENTPYTVPPLSEREHRPAAEPLPGTILEMWDGEFYHYSIYVGGGKTLGVHKPP AAISLATIELTPISLYWRPVYTPNYLICPDTLKGLAGERFPYTAFSNNCYNFCCWVLE LNDTWLSRKSISRTTGFFKPYQTWNRKPLPTFDDGKIKKVANAILCALGSLFSKPIKD LLGKLKPLNLLHLLASCDWTFAGIVETVILMAELFNVFWTPPDVSNFIASLIGDFELQ GPEDLAVELVPVVMGGIGMVLGFTAEKIGRMLSSAASTLRACKDLGNYALDILKLVMK WFFPKKEEKAEMETLRAIEDAILDMEAIGNNHLTALLKDKDSLAAFMKTLDLEEEKAR KLSTKSSSPDIVGTINAILARIAAARSLLHRAKEEMFSRVRPVVVMISGRPGIGKTHM ARHLAKSIAGTMSGDQRVGLVPRNGVDHWDAYRGERVVLWDDYGMASPVKDALTLQEL ADTCPVTLNCDRIENKGKMFDSDVIIITTNLANPAPLDYVNFEACSRRVDFLVYAESP EIEKVKRDFPGQPDMWKDHFKPDHSHIKLTLAPQGGFDKNGNTPHGKGTMRSLTQGSL TARVAGLVHERRDEFQLQGNDLQVYNFDTNKVSAFRKLAADNKYGIIETMKVGAALKN VKTLEDLKAALRDVKFNECEIIYRSSKYRVSSNGKGSVSVDKVEDHASQTANEVCSAL LRLRQARAKYYLSCFQDLVYTLIQVAGASFVVNRISKRFCWERWVKPTETQETFESEK ETAQSRWEIEPKDTEPEGKKGKNKKGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKY SIEEYLQDRDRYYEEVAVARATEEDFCEEEEAKIRQRVFRPTRRQRKEERGVLGLVTG SDIRKRKPDDFQPKGNLWADDTRSVDYNERLDFEAPPSVWSRIVPLGTGWGFWVSSNL LITTTHVLPRGLKELFGVEVKQIQIHKSGEFCRFRFPRPIRPDVTGLVLEEGAPEGTV CSILVKRPTGEMIPLAVRMGTHASMRIQGRTVGGQMGMLLTGANAKNMDLGTGPGDCG CPYIYKRGNDIVVAGVHTAAARGGNTVICATQGQDGEAVLEGNENLGTYCGAPILGPG KAPKLSTKTKFWRSSPDALPPGTYEPAYLGGKDPRVEKGPSLQQVMRDQLKPFTEPRG KPPRPAILEEAKKTVMNVLEQTIDPAKPWTYSQACASLDKTTSSGSPHHVRKNDHWNG ESFTGPLADQASKANLMYEQAKHVQPMYTAALKDELVKTDKIYKKIKKRLLWGSDLGT MIRCARAFGGLMDSMKASCIALPCRVGMNMNEDGPIIFDKHSKYRFHYDADYSRWDST QQRSILTAAMEVMVRFSAEPELAQVVAEDLLAPSQLDVGDFVVSVQEGLPSGVPCTSQ WNSIAHWILTLSAMAEVSGLSPDVVQAHSCFSFYGDDEIVSTDINIDPAKLTQKLREY GLVPTRPDKTEGPLVITENLAGLTFLRRSIARDPAGWFGKLDQDSILRQLYWTRGPNH ENPYESMVPHSQRATQLMALLGEASLHGPQFYKKVSKMVINEIKSGGLEFYVPRQEAM FRWMRFSDLSTWEGDRNLAPEGVNEDGVE" mat_peptide 4..1005 /gene="ORF1" /product="p48" mat_peptide 1006..2103 /gene="ORF1" /product="NTPase" mat_peptide 2104..2622 /gene="ORF1" /product="p22" mat_peptide 2623..3021 /gene="ORF1" /product="VPg" mat_peptide 3022..3564 /gene="ORF1" /product="Pro" mat_peptide 3565..5094 /gene="ORF1" /product="RdRp" gene 5078..6688 /gene="ORF2" CDS 5078..6688 /gene="ORF2" /note="major capsid protein" /codon_start=1 /product="VP1" /protein_id="WMX17768.1" /translation="MKMASNDATPSDDGAAGLVPEINNEVMALEPVAGASIAAPVVGQ QNVIDPWIRNNFVQAPAGEFTVSPRNSPGELLLDLELGPELNPYLSHLSRMYNGHAGG MEVQIVLAGNAFTAGKILFAAIPPSFPYENLSPAQLTMCPHVIVDVRQLEPVLLPMPD IRNVFYHYNQNNSPKLRLVAMLYTPLRANNSGDDVFTVSCRVLTRPSPDFQFTFLVPP TVESKTKNFTLPVLRVSEMTNSRFPAVLDQMYTSRSENIIVQPQNGRCTLDGELLGTT TLQSVSICNFRGTMQAKLNGQPRYQLQITNLDGSPIDPTDDMPAPLGTPDFQAMLYGV ASQRSPADNATRAHEAQIDTAGDTFAPKIGQVRFESGSDDFDLHDPTKFTPIGIKVDD QHPFRQWSLPNYGGHLALNNHLAPAVTPLFPGEQILFFRSHIPSAGGFTDGAMDCLLP QEWIEHFYQEAAPAQSDIALVRFINPDTGRVLLEAKLHKQGFLTVAASGDHPIVMPAN GYFRFEAWVNPFYTLAPVGTGSGRRRIQ" gene 6688..7482 /gene="ORF3" CDS 6688..7482 /gene="ORF3" /note="minor structural protein; small basic protein" /codon_start=1 /product="VP2" /protein_id="WMX17769.1" /translation="MAGAFLAGLAGDVAASSLSSLVGAGANAINQKVEYDFNRQLQEA SFKHDKDMLRAQVAATTGLQQAMIDIKREALTAGGFSPADAARGSVKAPMTTLLDWNG SRHWAPNSMRTTGYSGTFTSQGIRSSPHLSNQTPSAVKPTKTLPSISSSSSVYSSPST APSQSTQSTTLSAGTGSSRPNTVSTKTSTLSRTSDWVRDQNQMIGPFMNGALQTAYVT PPSSRASSQGTVSTVPKAVLDSWTPMFNTHRQPLFAHMRRRGESQT" ORIGIN 1 tgaatgaaga tggcgtctaa cgacgctacc actgcctttg gcagccaaaa ctctgtcaat 61 gacagtacta acaccgctcc ttccaataag gaagaggtcg gtgcattttc caactttaaa 121 gttggattta agaaaatgct gggtgccgtg cccaagagca ccaaagcgcc cagcagtgac 181 caacaatgcc ccacagtcaa gattggaccc agaacattag tggtcccgcc tgaaccacca 241 aatggagaag atatcgtgca gtttgatgca aagtcagaaa ctgtgagtgg gctaccagac 301 ctgacaacgg tgcaaaatga acatgaaaac accccatata cggtccctcc actgagtgag 361 agggaacaca gaccagccgc tgagccactc cctggcacaa tattagagat gtgggacggt 421 gagttctacc actactccat ctacgtcggt ggtggtaaga ccctgggggt ccacaaaccc 481 cctgcggcta taagccttgc aacaatcgag ttaaccccca tatctctgta ctggcggcct 541 gtctacaccc ctaattactt gatctgtcca gacacattga agggtcttgc tggtgagagg 601 ttcccctaca cggctttcag caacaactgt tacaacttct gctgctgggt gttggaactc 661 aacgacacgt ggcttagcag gaagtccata tctagaacaa ctggcttctt taaaccgtac 721 cagacttgga acagaaagcc tctcccaact ttcgatgatg gaaagattaa gaaagtggcc 781 aatgcaatcc tctgtgcgct tggttcgctg ttttcaaaac caatcaaaga cttattaggt 841 aagctcaaac cactgaatct gctgcacttg ctcgcttcgt gtgattggac gtttgcgggt 901 atagtggaga cggtcatctt aatggcggag ctcttcaacg tcttttggac cccgcctgac 961 gtctccaatt tcatagcctc cctgataggt gactttgagt tacaagggcc tgaggatttg 1021 gctgtggaac tagtccctgt ggttatgggt ggcataggca tggttcttgg cttcacggct 1081 gagaagatag gccgcatgtt gtcatctgct gcatcaactc tccgggcgtg caaagatctg 1141 ggaaactacg cccttgacat acttaaactg gtcatgaaat ggttcttccc caagaaagag 1201 gaaaaagctg agatggaaac cttaagggcg attgaggatg ctatcttgga catggaggct 1261 atagggaaca atcacctcac agctcttctt aaagacaagg atagcctcgc agccttcatg 1321 aagaccctag atctagaaga ggaaaaggcg aggaagctgt cgaccaaatc atcgtcacct 1381 gacatcgtcg gtaccatcaa cgccatactg gctagaattg ccgctgccag gtccctccta 1441 cacagggcca aagaggagat gttcagcaga gtcagaccag tggttgttat gatctcaggc 1501 aggcctggca ttggcaagac ccacatggca agacacctgg ccaagagcat cgctggcacc 1561 atgagtggtg accagagagt cggactcgtt ccgcggaacg gagtggacca ctgggacgca 1621 tacagagggg agagagtggt cttgtgggac gactatggca tggccagtcc tgtcaaagat 1681 gctttaaccc tgcaagaatt ggccgacact tgcccagtca ccttaaattg tgacaggatt 1741 gaaaacaaag gaaaaatgtt tgacagtgat gtcatcataa tcacaaccaa cttggccaac 1801 cccgcacccc tcgactatgt gaactttgag gcgtgctcca gaagagttga tttcctggtc 1861 tatgcagaat caccagaaat tgaaaaagtc aagagggatt tccctggcca acctgacatg 1921 tggaaagacc acttcaagcc agaccactcc cacataaaac tgaccctagc cccccagggc 1981 gggtttgaca agaatggtaa cactccgcat ggcaagggca ccatgcgatc tctaacccaa 2041 ggttctttga ctgcaagggt tgcagggtta gtccatgaga ggagagatga gttccagctc 2101 caaggaaatg acctccaagt atacaatttt gacaccaaca aggtttctgc gtttaggaaa 2161 ctggctgcag acaacaaata tgggatcatt gagacaatga aggtgggcgc tgcactcaag 2221 aatgtcaaaa ccttggagga tctgaaggct gctttgaggg atgtgaaatt caatgagtgt 2281 gagatcattt acaggagttc taaatataga gtctcttcca atggtaaggg ttcagtttct 2341 gttgacaagg tcgaggacca cgcatcccag actgcaaatg aagtgtgttc agcactcctg 2401 aggctcaggc aagcaagggc caaatattat ctcagctgct tccaggacct tgtctacacg 2461 ctcatacaag tcgccggggc gtcatttgtt gtcaacagaa tctccaagag gttttgctgg 2521 gaaagatggg tcaaaccaac cgagactcag gagacatttg agtccgagaa ggagaccgct 2581 caaagcaggt gggagattga acccaaagac acagaaccag aaggcaagaa gggtaaaaac 2641 aagaagggaa gaggcaagaa gcacacagcc ttctccagca agggtctgag tgatgaagag 2701 tatgatgagt acaagagaat cagggaggaa aggaatggaa agtactctat tgaggagtac 2761 ctacaagacc gggaccgata ctacgaagaa gtggcagttg cccgagcaac agaggaagac 2821 ttctgtgaag aggaggaggc caagatcaga cagagggttt tccgcccaac aaggagacaa 2881 aggaaagagg agagaggagt gctcggcctg gtcaccggct cagacattag aaagagaaaa 2941 ccagatgact tccaaccaaa aggcaacttg tgggcagatg acaccagaag tgtggactac 3001 aatgagagac ttgatttcga agctcccccg agtgtttggt ccaggatagt cccattggga 3061 actggttggg ggttctgggt ctcgtccaat ctcctgatca ctacaacaca tgtcctgccc 3121 aggggactca aagaactctt cggagttgag gttaaacaaa tccagatcca caagtctggc 3181 gagttttgta gattcagatt cccaagacca atcaggccag atgtcacagg gttggtgcta 3241 gaagagggtg ctccagaagg cactgtttgc tccatacttg tgaagagacc cacaggagag 3301 atgattccct tggcggtgag gatgggcact catgcatcca tgagaatcca gggcaggacc 3361 gtcggcggcc aaatgggaat gcttctcaca ggagcaaacg ccaagaacat ggaccttggc 3421 accggccctg gtgattgcgg ttgtccctac atctataaac gcggcaacga catagttgtt 3481 gcaggtgttc ataccgcagc agcccgggga ggtaacactg tcatctgtgc tacccaagga 3541 caagatgggg aggcagtgct tgaagggaac gaaaatcttg gcacttactg tggtgccccg 3601 atcctaggtc ctggcaaggc acccaagctc agcacaaaaa ccaaattctg gcgctcatcg 3661 ccagatgccc taccacctgg cacatatgag cctgcttacc taggaggcaa ggaccctaga 3721 gtggagaaag ggccctccct gcagcaggtc atgagagatc agctaaaacc cttcacagag 3781 cctagaggta aaccaccgag acctgcgatc ctagaagagg ctaagaagac agtgatgaat 3841 gttttggaac agaccatcga ccctgctaaa ccttggacct actctcaagc atgtgcatca 3901 ctagataaaa ccacctccag tggtagcccc caccatgtca ggaagaatga ccactggaat 3961 ggagagtctt tcacaggtcc ccttgcagac caagcatcta aagctaacct catgtatgag 4021 caggccaaac atgtgcagcc catgtacacg gccgccctca aggatgaact tgttaagact 4081 gataaaatct acaaaaagat aaagaagaga ctcctgtggg gatcagacct tggcacgatg 4141 atcaggtgcg ccagggcttt tggtggcctc atggacagca tgaaggcgag ctgcatagct 4201 cttccttgta gggtggggat gaacatgaat gaggatggtc caatcatctt tgacaagcac 4261 tccaagtaca gattccatta tgatgctgac tattcaaggt gggactcaac ccaacaaagg 4321 agtatcctaa ctgccgctat ggaggtgatg gttcggttct ctgcagaacc agagttagca 4381 caagtagtag cagaggatct cttggcacct agtcaactgg atgttggtga ttttgttgtc 4441 tcagtccagg agggtttgcc atcgggtgtt ccatgcacat cacaatggaa ctcgatagcg 4501 cactggattc taaccttaag tgcaatggca gaagtgtcag gcctttcacc agatgttgtc 4561 caggctcatt cctgtttctc cttctatggt gatgatgaga ttgtcagcac cgatatcaac 4621 attgaccctg caaaattgac acagaaactc agggaatatg gccttgtccc cacccggcct 4681 gacaagactg agggtcccct cgtcataact gagaacctag ctggcctgac tttcctccgc 4741 aggtcgatag cgcgggatcc agctgggtgg tttggaaaac tggaccaaga ctcaattctc 4801 agacaactgt actggacaag agggcctaac catgaaaacc catacgaaag catggtcccc 4861 cattcccaac gagctacaca gctcatggcc ctccttggtg aggcctcact acatgggccc 4921 cagttttaca agaaggttag caaaatggtc atcaatgaga tcaaaagtgg tggtctggaa 4981 ttttacgtgc ccagacaaga ggccatgttc aggtggatga gattctctga cctcagcacg 5041 tgggagggcg atcgcaatct tgctcccgag ggtgtgaatg aagatggcgt cgaatgacgc 5101 tactccatct gatgatggtg cagccggcct cgtaccagag atcaacaatg aggttatggc 5161 tcttgaaccc gttgctgggg cctccattgc agcccccgtg gtcgggcaac agaatgtaat 5221 agatccctgg attagaaata actttgtaca agcccctgct ggtgaattca cagtttcccc 5281 tagaaactct cctggagaac tcttacttga tttagaattg ggccctgaac tgaatcccta 5341 tctttcacac ctgtccagga tgtacaatgg gcacgcaggt ggaatggaag tgcagatagt 5401 actggctggg aatgcgttca cagctggtaa gatcctattt gctgccatcc cacctagctt 5461 cccctatgaa aatttgtcac ctgctcaatt gactatgtgc ccccatgtaa tagtggatgt 5521 gagacaacta gaaccagtgc ttctgccaat gccagacata agaaatgttt tctatcacta 5581 taaccaaaac aatagtccca aactcaggct tgtagctatg ctttatactc ctttgagagc 5641 taacaactca ggtgatgacg tgttcacggt gtcttgccgc gttttgacac gcccctctcc 5701 agacttccag ttcacctttc tggtcccacc cacagttgaa tctaaaacta agaactttac 5761 ccttcctgtc cttagggtct cagagatgac aaactcaagg ttccccgctg ttttggacca 5821 aatgtacaca agcaggagtg aaaacatcat tgtccaaccc caaaacggca ggtgcacgct 5881 tgacggtgag ctgctcggta ccaccacctt gcaatctgtg tctatatgca attttagagg 5941 aacaatgcag gcaaagctga atggacaacc acgataccaa ttacaaatca ccaatttgga 6001 tggctcaccc atagacccaa cagatgacat gcctgccccc cttggcacac cagatttcca 6061 ggccatgttg tatggcgttg caagtcaacg ctcccccgca gacaacgcca ctagggcaca 6121 tgaagcacag attgacactg cgggtgacac tttcgccccg aaaattggcc aggtccgttt 6181 cgaatcaggc tctgatgatt ttgacctaca tgaccctaca aagttcacac ccattggtat 6241 caaagtggat gatcagcacc cctttagaca gtggtccctg ccaaactatg gtggtcacct 6301 tgccctgaac aatcatttag cccccgctgt gacaccactc ttccccggcg agcagatttt 6361 gttcttcagg tcacacattc caagcgccgg aggctttaca gacggtgcta tggactgctt 6421 gctgccccaa gagtggatag agcacttcta ccaggaggca gctcctgccc agtctgacat 6481 cgcactggtg aggttcatta accccgatac aggaagagtg ctccttgaag ccaagttgca 6541 caaacagggc ttccttacag ttgcagcatc tggagaccac cccattgtga tgcccgctaa 6601 tggttatttt aggtttgaag cttgggtcaa ccccttctac actctcgccc ccgtgggaac 6661 tgggtctggg cgcagaagga ttcagtaatg gcaggagctt tccttgcagg tctagcaggt 6721 gacgttgcgg cttctagttt gagctcactc gtgggcgctg gagccaacgc catcaatcag 6781 aaggtggagt acgacttcaa cagacaactc caggaggctt ccttcaaaca tgacaaggat 6841 atgctcagag cccaggttgc agcaacaaca ggcctccaac aggccatgat agatatcaag 6901 cgggaggcat tgaccgcagg cggcttttcc cccgctgatg ctgcaagagg ttcagtcaag 6961 gcgcccatga caacgctcct tgattggaat ggctctaggc attgggcacc caactccatg 7021 aggacaactg gctattcagg cacatttact tcccagggca ttagaagctc cccccacctg 7081 tctaatcaaa ctccaagtgc tgtcaaaccc actaaaacct tgccatctat atctagttct 7141 tctagtgtgt atagctctcc ttctactgcc ccctcgcaat caacacaatc aactacgctg 7201 tctgcaggaa cagggtcgtc caggcctaac accgtgtcca caaagacctc cacactgtcg 7261 aggacaagtg actgggtcag agatcaaaat cagatgattg gcccgttcat gaatggtgca 7321 cttcaaactg cttatgtcac tccaccatcg agcagggcct catcacaagg gacggtctcg 7381 accgtaccca aggctgtttt ggactcctgg actcctatgt tcaacaccca caggcagcct 7441 ctcttcgccc acatgcgtag gcgaggggag tcacagactt agtgaaaagg atgattaggg 7501 cttttctttc ctttc //