Typing tool
|
Complete norovirus genomes
OR536462 | GII.14 | ||
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GII.P7 |
ORF1: 1..5085 ORF2: 5066..6676 ORF3: 6676..7426LOCUS OR536462 7426 bp RNA linear VRL 04-MAR-2024 DEFINITION Norovirus GII isolate Hu/NL/2021/GII.14/Rotterdam/I129S32_P18-d1744 nonstructural polyprotein (ORF1) gene, partial cds; VP1 (ORF2) gene, complete cds; and VP2 (ORF3) gene, partial cds. ACCESSION OR536462 VERSION OR536462.1 KEYWORDS . SOURCE Norovirus GII ORGANISM Norovirus GII Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 7426) AUTHORS Izquierdo Lara,R.W., Villabruna,N., Hesselink,D.A., Schapendonk,C.M.E., Ribo Pons,S., Meier,J.I.J., Goodfellow,I., Dalm,V.A.S.H., Fraaij,P.L.A., van Kampen,J.A., Koopmans,M.P.G. and de Graaf,M. TITLE Intra-host multi-lineage evolution of human Norovirus in immunocompromised individuals: Implications for treatment JOURNAL Unpublished REFERENCE 2 (bases 1 to 7426) AUTHORS Izquierdo Lara,R.W., Villabruna,N., Hesselink,D.A., Schapendonk,C.M.E., Ribo Pons,S., Meier,J.I.J., Goodfellow,I., Dalm,V.A.S.H., Fraaij,P.L.A., van Kampen,J.A., Koopmans,M.P.G. and de Graaf,M. TITLE Direct Submission JOURNAL Submitted (11-SEP-2023) Viroscience, Erasmus Medical Center, Dr. Molewaterplein 40, Rotterdam, Zuid-Holland 3015 GD, Netherlands COMMENT ##Assembly-Data-START## Assembly Method :: Spades v. 3.15.4; BWA-MEM v. 0.7.17 Sequencing Technology :: Illumina ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..7426 /organism="Norovirus GII" /mol_type="genomic RNA" /isolate="Hu/NL/2021/GII.14/Rotterdam/I129S32_P18-d1744" /isolation_source="feaces" /host="Homo sapiens" /db_xref="taxon:122929" /country="Netherlands: Rotterdam" /collection_date="16-Sep-2021" /note="genotype: GII.14" gene <1..5085 /gene="ORF1" CDS <1..5085 /gene="ORF1" /codon_start=1 /product="nonstructural polyprotein" /protein_id="WMX17764.1" /translation="ASNDATTAFGSQNSVNDSTNTAPSNKEEVGAFSNFKVGFKKMLG AVPKSTKAPSSDQQCPTVKIGPRTLVVPPEPPNGEDIVQFDVKSETVSGLPDLTTVQN EHENTPYTVPPLSEREHRPAAEPLPGTILEMWDGEFYHYSIYVGGGKTLGVHKPPAAI SLATIELTPISLYWRPVYTPNYLICPDTLKGLAGERFPYTAFSNNCYNFCCWVLELND TWLSRKSISRTTGFFKPYQTWNRKPLPTFDDGKIKKVANAILCALGSLFSKPIKDLLG KLKPLNLLHLLASCDWTFAGIVETVILMAELFNVFWTPPDVSNFIASLIGDFELQGPE DLAVELVPVVMGGIGMVLGFTAEKIGRMLSSAASTLRACKDLGNYALDILKLVMKWFF PKKEEKAEMETLRAIEDAILDMEAIGNNHLTALLKDKDSLAAFMKTLDLEEEKARKLS TKSSSPDIVGTINAILARIAAARSLLHRAKEEMYSRVRPVVVMISGRPGIGKTHMARH LAKSIANTMSGDQRVGLVPRNGVDHWDAYRGERVVLWDDYGMASPVKDALTLQELADT CPVTLNCDRIENKGKMFDSDVIIITTNLANPAPLDYVNFEACSRRVDFLVYAESPEIE KVKRDFPGQPDMWKDHFKPDHSHIKLTLAPQGGFDKNGNTPHGKGTMRSLTQGSLTAR VAGLVHERRDEFQLQGNDLQVYNFDTNKVSAFRKLAADNKYGIIETMKVGAALKNVKT LEDLKAALRDVKFNECEIIYRSSKYRVSSNGKGSVSVDKVEDHASQTANEVCSALLRL RQARAKYYLSCFQDLVYTLIQVAGASFVVNRISKRFCWERWVKPTETQETFESEKETA QSRWEIEPKDTEPEGKKGKNKKGRGKKHTAFSSKGLSDEEYDEYKRIREERDGKYSIE EYLQDRDRYYEEVAVARATEENFCEEEEAKIRQRVFRPTRRQRKEERGVLGLVTGSDI RKRKPDDFQPKGNLWADDTRSVDYNERLDFEAPPSVWSRIVPLGTGWGFWVSSNLLIT TTHVLPRGLKELFGVEVKQIQIHKSGEFCRFRFPRPIRPDVTGLVLEEGAPEGTVCSI LVKRPTGEMIPLAVRMGTHASMRIQGRTVGGQMGMLLTGANAKNMDLGTGPGDCGCPY IYKRGNDIVVAGVHTAAARGGNTVICATQGQDGEAVLEGNENLGTYCGAPILGPGKAP KLSTKTKFWRSSPDALPPGTYEPAYLGGKDPRVEKGPSLQQVMRDQLKPFTEPRGKPP RPAILEEAKKTVMNVLEQTIDPAKPWTYSQACASLDKTTSSGSPHHVRKNDHWNGESF TGPLADQASKANLMYEQAKHVQPMYTAALKDELVKTDKIYKKIKKRLLWGSDLGTMIR CARAFGGLMDSMKASCIALPCRVGMNMNEDGPIIFDKHAKFKYHYDADYSRWDSTQQR SILTAAMEVMVRFSAEPELAQVVAEDLLAPSQLDVGDFVVSVQEGLPSGVPCTSQWNS IAHWILTLSAMAEVSGLSPDVVQAHSCFSFYGDDEIVSTDINIDPAKLTQKLREYGLV PTRPDKTEGPLVITENLAGLTFLRRSIARDPAGWFGKLDQDSILRQLYWTRGPNHENP YESMVPHSQRATQLMALLGEASLHGPQFYKKVSKMVINEIKSGGLEFYVPRQEAMFRW MRFSDLSTWEGDRNLAPEGVNEDGVE" mat_peptide <1..993 /gene="ORF1" /product="p48" mat_peptide 994..2091 /gene="ORF1" /product="NTPase" mat_peptide 2092..2610 /gene="ORF1" /product="p22" mat_peptide 2611..3009 /gene="ORF1" /product="VPg" mat_peptide 3010..3552 /gene="ORF1" /product="Pro" mat_peptide 3553..5082 /gene="ORF1" /product="RdRp" gene 5066..6676 /gene="ORF2" CDS 5066..6676 /gene="ORF2" /note="major capsid protein" /codon_start=1 /product="VP1" /protein_id="WMX17765.1" /translation="MKMASNDATPSDDGAAGLVPEINNEVMALEPVAGASIAAPVVGQ QNVIDPWIRNNFVQAPAGEFTVSPRNSPGELLLDLELGPELNPYLSHLSRMYNGHAGG MEVQIVLAGNAFTAGKILFAAIPPSFPYENLSPAQLTMCPHVIVDVRQLEPVLLPMPD IRNVFYHYNQNNSPKLRLVAMLYTPLRANNSGDDVFTVSCRVLTRPSPDFQFTFLVPP TVESKTKNFTLPVLRVSEMTNSRFPAVLDQMYTSRSENIIVQPQNGRCTLDGELLGTT TLQSVSICNFRGTMQAKLNGQPRYQLQITNLDGSPIDPTDDMPAPLGTPDFQAMLYGV ASQRSPADNATRAHEAQIDTAGDTFAPKIGQVRFESGSDDFDLHDPTKFTPIGIKVDD QHPFRQWSLPNYGGHLALNNHLAPAVTPLFPGEQILFFRSHIPSAGGFTDGAMDCLLP QEWIEHFYQEAAPAQSDIALVRFINPDTGRVLLEAKLHKQGFLTVAASGDHPIVMPAN GYFRFEAWVNPFYTLAPVGTGSGRRRIQ" gene 6676..>7426 /gene="ORF3" CDS 6676..>7426 /gene="ORF3" /note="minor structural protein; small basic protein" /codon_start=1 /product="VP2" /protein_id="WMX17766.1" /translation="MAGAFLAGLAGDVAASSLSSLVGAGANAINQKVEYDFNRQLQEA SFKHDKDMLRAQVAATTGLQQAMIDIKREALTAGGFSPADAARGSVKAPMTTLLDWNG SRHWAPNSMRTTGYSGTFTSQGIRSSPHLSNQTPSAVKPTKTLPSISSSSSVYSSPST APSQSTQSTTLSAGTGSSRPNTVSTKTSTLSRTSDWVRDQNQMIGPFMNGALQTAYVT PPSSRASSQGTVSTVPKAVLDSWTPMFNTHRQ" ORIGIN 1 gcgtctaacg acgctaccac tgcctttggc agccaaaact ctgtcaatga cagtactaac 61 accgctcctt ccaataagga agaggtcggt gcattttcca actttaaagt tggatttaag 121 aaaatgctgg gtgccgtgcc caagagcacc aaagcgccca gcagtgacca acaatgcccc 181 acagtcaaga ttggacccag aacattagtg gtcccgcctg aaccaccgaa tggagaagat 241 atcgtgcagt ttgatgtaaa gtcagaaact gtgagtgggc taccagacct gacaacggtg 301 caaaatgaac atgaaaacac cccatataca gtccctccac tgagtgagag ggaacacaga 361 ccagccgctg agccactccc tggcacaata ttagagatgt gggacggtga gttctaccac 421 tactccatct acgtcggtgg tggtaagacc ctgggggtcc acaaaccccc tgcggctata 481 agccttgcaa caatcgagtt aacccccata tctctgtact ggcggcctgt ctacacccct 541 aattacttga tctgtccaga cacattgaag ggtcttgctg gtgagaggtt cccctacacg 601 gctttcagca acaactgtta caacttctgc tgctgggtgt tggaactcaa cgacacgtgg 661 cttagcagga agtccatatc tagaacaact ggcttcttta aaccgtacca gacttggaac 721 agaaagcctc tcccaacttt cgatgatgga aagattaaga aagtggccaa tgcaattctc 781 tgtgcgcttg gttcgctatt ctcaaaacca atcaaagacc tattaggcaa gctcaaacca 841 ctgaacctgc tgcacctgct cgcttcgtgt gattggacgt ttgcgggtat agtggagacg 901 gtcatcttaa tggcggaact ctttaacgtc ttctggaccc cgcctgacgt ctccaatttc 961 atagcctccc tgataggtga ctttgagttg caagggcctg aggacttagc tgtggaacta 1021 gtccctgtgg ttatgggtgg cataggcatg gttcttggct tcacggctga gaagataggc 1081 cgcatgttgt catctgctgc atcaactctc cgggcgtgca aagatctggg aaactacgcc 1141 cttgacatac tcaaactggt catgaaatgg ttcttcccca agaaagagga aaaagctgag 1201 atggaaacct taagggcgat tgaggatgct atcttggaca tggaggctat agggaacaat 1261 cacctcacag ctcttcttaa agacaaggat agcctcgcag ccttcatgaa gaccctagat 1321 ctagaagagg aaaaggcgag gaagctgtcg accaaatcat cgtcacctga catcgtcggt 1381 accatcaacg ccatactggc tagaattgcc gctgccaggt ccctcctaca cagggccaaa 1441 gaggagatgt acagcagagt cagaccagtg gttgttatga tttcaggcag gcccggcatt 1501 ggcaagaccc acatggcgag acacctggcc aagagcatcg ctaacaccat gagtggtgac 1561 cagagagtcg gactcgttcc gcggaacgga gtggaccact gggatgcata cagaggggag 1621 agagtggtct tgtgggatga ctatggcatg gccagtcctg tcaaagacgc tttaaccctg 1681 caagaattgg ccgacacttg cccagtcacc ttaaattgtg acaggattga aaacaaaggg 1741 aaaatgtttg acagtgatgt tatcataatc acaaccaact tggccaatcc cgcacccctc 1801 gactatgtga actttgaggc gtgctccaga agagttgatt tcctggtcta tgcagaatca 1861 ccagaaattg aaaaagtcaa gagggatttc cctggccaac ctgacatgtg gaaagaccac 1921 ttcaagccag accactccca cataaaactg accctagccc cccagggcgg gtttgacaag 1981 aatggtaaca ctccgcatgg caagggcacc atgcgatctc taacccaagg ttctttgact 2041 gcaagggttg cagggttagt ccatgagagg agagatgagt tccagctcca aggaaatgac 2101 ctccaagtat acaattttga caccaacaag gtttctgcgt ttaggaaact ggctgcagac 2161 aacaaatatg ggatcattga gacaatgaag gtgggcgctg cactcaagaa tgtcaaaacc 2221 ttggaagatc tgaaggctgc tttgagggat gtgaaattca atgagtgtga gatcatttac 2281 aggagttcta aatatagagt ctcttccaat ggtaagggtt cagtttctgt tgacaaggtc 2341 gaggaccacg catcccagac tgcaaatgaa gtgtgttcag cactcctgag gctcaggcaa 2401 gcaagggcca aatattatct cagctgcttc caggaccttg tctacacgct catacaagtc 2461 gccggggcgt catttgttgt caacagaatc tccaagaggt tttgctggga aagatgggtc 2521 aaaccaaccg agactcagga gacatttgag tccgagaagg agaccgctca aagcaggtgg 2581 gagattgaac ccaaagacac agaaccagaa ggcaagaagg gtaaaaacaa gaagggaaga 2641 ggcaagaagc acacagcctt ctccagcaag ggtctgagtg atgaagagta tgatgagtac 2701 aagagaatca gggaggaaag agatggaaag tactccattg aggagtacct acaagaccgg 2761 gaccgatact acgaagaagt ggcagtcgcc cgagcaacag aggaaaactt ctgtgaagag 2821 gaggaggcca agatcaggca gagggttttc cgcccaacga ggagacaaag gaaagaggag 2881 agaggagtgc tcggcctggt caccggctca gacattagaa agagaaaacc agatgacttc 2941 caaccaaaag gcaacttgtg ggcagatgac accagaagtg tggactacaa tgagagactt 3001 gattttgaag ctcccccgag tgtttggtcc aggatagtcc cattgggaac tggttggggg 3061 ttctgggtct cgtccaatct cctgatcact acaacacatg tcctgcccag gggactcaaa 3121 gaactcttcg gagttgaggt taaacaaatc cagatccaca agtctggcga gttttgtaga 3181 ttcagattcc caagaccaat caggccagat gtcacagggt tggtgctaga agagggtgct 3241 ccagaaggca ctgtttgctc catacttgtg aagagaccca caggagagat gattcccttg 3301 gcggtgagga tgggcactca tgcatccatg agaatccagg gcaggaccgt cggcggccaa 3361 atgggaatgc ttctcacagg agcaaatgcc aagaacatgg accttggcac cggccctggt 3421 gattgcggtt gtccctacat ctataaacgc ggcaacgaca tagttgttgc aggtgttcat 3481 accgcagcag cccggggagg taacactgtc atctgtgcta cccaaggaca agatggggag 3541 gcagtgcttg aagggaacga aaatcttggc acttactgtg gtgccccgat cctaggtcct 3601 ggcaaggcac ccaagctcag cacaaaaacc aaattctggc gctcatcgcc agatgcccta 3661 ccacctggca catatgagcc tgcttaccta ggaggcaagg accctagagt ggagaaaggg 3721 ccctccctgc agcaggtcat gagagaccag ctaaaaccct tcacagagcc tagaggtaaa 3781 ccaccgagac ctgcgatcct agaagaggct aagaagacag tgatgaatgt tttggaacag 3841 accatcgacc ctgctaaacc ttggacctac tctcaagcat gtgcatcact agataaaacc 3901 acctccagtg gtagccccca ccatgtcagg aagaatgacc actggaatgg agagtctttc 3961 acaggtcccc ttgcagacca agcatctaaa gctaacctca tgtatgaaca ggccaaacat 4021 gtgcagccca tgtacacggc cgcactcaag gatgaacttg ttaagactga taaaatctac 4081 aaaaagataa agaaaagact cctgtgggga tcagaccttg gcacgatgat caggtgcgcc 4141 agggcttttg gtggcctcat ggatagcatg aaggcgagct gcatagcact tccttgtagg 4201 gtggggatga acatgaatga ggatggccca atcatctttg acaagcacgc caagttcaaa 4261 tatcactatg atgctgacta ttcaaggtgg gactcaaccc aacaaaggag tatcctaact 4321 gccgctatgg aggtgatggt tcggttctct gcagaaccag agttagcaca agtagtagca 4381 gaggatctct tggcacctag tcaactggat gttggtgatt ttgttgtctc agtccaggag 4441 ggtttgccat cgggtgttcc atgcacatca caatggaact cgatagcgca ctggattcta 4501 accttaagtg caatggcaga agtgtcaggc ctttcaccag atgttgtcca ggctcattcc 4561 tgtttctcct tctatggtga tgatgagatt gtcagcaccg atatcaacat tgaccctgca 4621 aaattgacac agaaactcag ggaatatggc cttgtcccca cccggcctga caagactgag 4681 ggtcccctcg tcataactga gaacctagct ggcctgactt tcctccgcag gtcgatagcg 4741 cgggatccag ctgggtggtt tggaaaactg gaccaagact caattctcag acaactgtac 4801 tggacaagag ggcctaacca tgaaaaccca tacgaaagca tggtccccca ttcccaacga 4861 gctacacagc tcatggccct ccttggtgag gcctcactac atgggcccca gttttacaag 4921 aaggttagca aaatggtcat caatgagatc aaaagtggtg gtctggaatt ttacgtgccc 4981 agacaagagg ccatgttcag gtggatgaga ttctctgacc tcagcacgtg ggagggcgat 5041 cgcaatcttg ctcccgaggg tgtgaatgaa gatggcgtcg aatgacgcta ctccatctga 5101 tgatggtgca gccggcctcg taccagagat caacaatgag gttatggctc ttgaacccgt 5161 tgctggggcc tccattgcag cccccgtggt cgggcaacag aatgtaatag atccctggat 5221 tagaaataac tttgtacaag cccctgctgg tgaattcaca gtttccccta gaaactctcc 5281 tggagaactc ttacttgatt tagaattggg ccctgaactg aatccctatc tttcacacct 5341 gtccaggatg tacaatgggc acgcaggtgg aatggaagtg cagatagtac tggctgggaa 5401 tgcgttcaca gctggtaaga tcctatttgc tgccatccca cctagcttcc cctatgaaaa 5461 tttgtcacct gctcaattga ctatgtgccc ccatgtaata gtggatgtga gacaactaga 5521 accagtgctt ctgccaatgc cagacataag aaatgttttc tatcactata accaaaacaa 5581 tagtcccaaa ctcaggcttg tagctatgct ttacactcct ttgagagcta acaactcagg 5641 tgatgacgtg ttcacggtgt cttgccgcgt tttgacacgc ccctctccag acttccagtt 5701 cacctttctg gtcccaccca cagttgaatc taaaactaag aactttaccc ttcctgtcct 5761 tagggtctca gagatgacaa actcaaggtt ccccgctgtt ttggaccaaa tgtacacaag 5821 taggagtgaa aacatcattg tccaacccca aaacggcagg tgcacgcttg acggtgagct 5881 gctcggtacc accaccttgc aatctgtgtc tatatgcaat tttagaggaa caatgcaggc 5941 aaagctgaat ggacaaccac gataccaatt acaaatcacc aatttggatg gctcacccat 6001 agacccaaca gatgacatgc ctgcccccct tggcacacca gatttccagg ccatgttgta 6061 tggcgttgca agtcaacgct cccccgcaga caacgccact agggcacatg aagcacagat 6121 tgacactgcg ggtgacactt tcgccccgaa aattggccag gtccgtttcg aatcaggctc 6181 tgatgatttt gacctacatg accctacaaa gttcacaccc attggtatca aagtggatga 6241 tcagcacccc tttagacagt ggtccctgcc aaactatggt ggtcaccttg ccctgaacaa 6301 tcatttagcc cccgctgtga caccactctt ccccggcgag cagattttgt tcttcaggtc 6361 acacattcca agcgccggag gctttacaga cggtgctatg gactgcttgc tgccccaaga 6421 gtggatagag cacttctacc aggaggcagc tcctgcccag tctgacatcg cactggtgag 6481 gttcattaac cccgatacag gaagagtgct ccttgaagcc aagttgcaca aacagggctt 6541 ccttacagtt gcagcatctg gagaccaccc cattgtgatg cccgctaatg gttattttag 6601 gtttgaagct tgggtcaacc ccttctacac tctcgccccc gtgggaactg ggtctgggcg 6661 cagaaggatt cagtaatggc aggagctttc cttgcaggtc tagcaggtga cgttgcggct 6721 tctagtttga gctcactcgt gggcgctgga gccaacgcca tcaatcagaa ggtggagtac 6781 gacttcaaca gacaactcca ggaggcttcc ttcaaacatg acaaggatat gctcagagcc 6841 caggttgcag caacaacagg cctccaacag gccatgatag atatcaagcg ggaggcattg 6901 accgcaggcg gcttttcccc cgctgatgct gcaagaggtt cagtcaaggc gcccatgaca 6961 acactccttg attggaatgg ctctaggcat tgggcaccca actccatgag gacaactggc 7021 tattcaggca catttacttc ccagggcatt agaagctccc cccacctgtc taatcaaact 7081 ccaagtgctg tcaaacccac taaaaccttg ccatctatat ctagttcttc tagtgtgtat 7141 agctctcctt ctactgcccc ctcgcaatca acacaatcaa ctacgctgtc tgcaggaaca 7201 gggtcgtcca ggcctaacac cgtgtccaca aagacctcca cactgtcgag gacaagtgac 7261 tgggtcagag atcaaaatca gatgattggc ccgttcatga atggtgcact tcaaactgct 7321 tatgtcactc caccatcgag cagggcctca tcacaaggga cggtctcgac cgtacccaag 7381 gctgttttgg actcctggac tcctatgttc aacacccaca ggcagc //