Typing tool
|
Complete norovirus genomes
OR084261 | GII.4 Sydney | ||
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GII.P31 |
ORF1: 5..5104 ORF2: 5085..6707 ORF3: 6707..7513LOCUS OR084261 7516 bp RNA linear VRL 10-JUN-2023 DEFINITION Norovirus GII isolate 2017-732 nonstructural polyprotein (ORF1), VP1 (ORF2), and VP2 (ORF3) genes, complete cds. ACCESSION OR084261 VERSION OR084261.1 KEYWORDS . SOURCE Norovirus GII ORGANISM Norovirus GII Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 7516) AUTHORS Sun,Z. TITLE Direct Submission JOURNAL Submitted (05-JUN-2023) Microbiological laboratory, 4.tYantai Center for Disease Control and Prevention, 17 Fuhou Road, Laishan District, Yantai 264003, China COMMENT ##Assembly-Data-START## Assembly Method :: Spades 3.15.5 v. MAY-2021 Sequencing Technology :: Illumina ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..7516 /organism="Norovirus GII" /mol_type="genomic RNA" /isolate="2017-732" /isolation_source="feces" /host="Homo sapiens" /db_xref="taxon:122929" /country="China" /collection_date="Oct-2017" /note="genotype: GII" gene 5..5104 /gene="ORF1" CDS 5..5104 /gene="ORF1" /codon_start=1 /product="nonstructural polyprotein" /protein_id="WIF39292.1" /translation="MKMASNGASAAAVANSNNDIAKSSSDGVFSNMAVTFKRALGARP KQPPPKEIPPRPPRPPTPELVKKIPPPPPNGEDELVVSYSAKDGVSGLPELTTVRQPE ETNTAFSVPPLNQRESRDAKEPLTGTIIEMWDGEIYHYGLYVERGLILGVHKPPAAIS LAKVELAPLSLFWRPVYTPQYLISPDTLRRLHGESFPYTAFDNNCYAFCCWVLDLNDS WLSRRMIQRTTGFFRPYQDWNRKPLPTMDDSKLKKVANIFLCTLSSLFTRPIKDIIGK LKPLNILNILATCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPED LAVELVPIVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFP KKEEANELAMVRSIEDAVLDLEAIENNHMTTLLKDKDSLTTYMRTLDLEEEKARKLST KSASPDIVGTINSLLARIAAARSLVHRAKEELSSRPRPVVVMISGRPGIGKTHLAREL AKKIAASLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTC PLTLNCDRIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEK AKRDFPGQPDMWKNAFSPDFSHIKLSLAPQGGFDKNGNTPHGKGVMKTLTTGSLIARA SGLLHERLDEYELQGPALTTFNFDRNKILAFRQLAAENKYGLMDTMRVGKQLKDVKTM SDLKQALKNIAIKKCQIVYNGGTYTLEADGKGSVKVDKVQSATVQTNNELAGALHHLR CARIRYYVKCVQEALYSIIQIAGAAFVTTRIAKRMNIQNLWSKPQVEDTEEMANKDGC LKPKDDEEFVVSSDDIKTEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERNG KYSIEEYLQDRDRYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLV TGSEIRKRNPEDFKPKGKLWADDDRSVDYNEKLNFEAPPSIWSRIVNFGSGWGFWVSP SLFITSTHVIPQGAKEFFGVPIKQIQIHKSGEFCRLRFPKPIRTDVTGMILEEGAPEG TVATLLIKRPTGELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGD CGCPYIYKRGNDYVVIGVHTAAARGGNTVICATQGSEGEATLEGGDSKGTYCGAPILG PGSAPKLSTKTKFWRSSTTPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEP RGKPPRPNVLEAAKKTIINVLEQTIDPPQKWSFAQACASLDKTTSSGHPHHMRKNDCW NGESFTGKLADQASKANLMFEEGKNMTPVYTGALKDELVKTDKVYGKVKKRLLWGSDL ATMIRCARAFGGLMDELKAHCVTLPVRVGMNMNEDGPIIFEKHSRYRYHYDADYSRWD STQQRDVLAAALEIMVKFSPEPHLAQVVAEDLLSPSVMDVGDFQISISEGLPSGVPCT SQWNSIAHWLLTLCALSEVTDLSPDIIQANSLFSFYGDDEIVSTDIKLDPERLTAKLK EYGLKPTRPDKTEGPLVISEDLDGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGP NHEDPFETMIPHSQRPIQLMSLLGEAALHGPAFYSKISKLVIAELKEGGMDFYVPRQE PMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE" mat_peptide 5..994 /gene="ORF1" /product="p48" mat_peptide 995..2092 /gene="ORF1" /product="NTPase" mat_peptide 2093..2629 /gene="ORF1" /product="p22" mat_peptide 2630..3028 /gene="ORF1" /product="VPg" mat_peptide 3029..3571 /gene="ORF1" /product="Pro" mat_peptide 3572..5101 /gene="ORF1" /product="RdRp" gene 5085..6707 /gene="ORF2" CDS 5085..6707 /gene="ORF2" /note="major capsid protein" /codon_start=1 /product="VP1" /protein_id="WIF39293.1" /translation="MKMASSDANPSDGSAANLVPEVNNEVMALEPVVGAAIAAPVAGQ QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG FEVQVILAGNAFTAGKVIFAAVPPNFPTEGLSPSQVTMFPHIVVDVRQLEPVLIPLPD VRNNFYHYNQSNDPTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP TVESRTKPFSVPVLTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT QLSPVNICTFRGDVTHITGSHNYTMNLASQNWSNYDPTEEIPAPLGTPDFVGKIQGML TQTTRTDGSTRGHKATVYTGSADFAPKLGRVQFETDTNNDFEANQNTKFTPVGVIQDG GTTHRNEPQQWVLPSYSGRNTPNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD CLLPQEWVQYFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV IPPNGYFRFDSWVNQFYTLAPMGNGAGRRRAL" gene 6707..7513 /gene="ORF3" CDS 6707..7513 /gene="ORF3" /note="minor structural protein; small basic protein" /codon_start=1 /product="VP2" /protein_id="WIF39294.1" /translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA SFQFSSNLQQASFQHDKEMLQAQIEATKRLQQEMMKVKQAMLLEGGFSETDAARGAIN APMTKALDWSGTRYWAPDARTTTYNAGRFSTPQPSGALPGRANLRDAVPARGSSSKSS NSSTATSVHSNQTISTRLGSTAGSGTSVSSFPSTARTRSWVEDQSRNLSPFMRGAHNI SFVTPPSSRSSSQGTVSTVPKEILDSWTGAFNTRRQPLFAHIRKRGESRV" ORIGIN 1 gtgaatgaag atggcgtcta acggcgcttc cgctgccgct gttgccaaca gcaacaacga 61 catcgcaaaa tcttcaagtg acggtgtatt ttctaacatg gctgtcactt ttaagcgggc 121 cctcggggcg cggcctaaac agccgccccc gaaggaaata ccacccagac ccccgcgacc 181 acccacacca gaattggtca aaaagatccc tcctccccca cccaacgggg aggatgaact 241 agtggtctct tacagcgcca aagatggcgt ttccggacta cctgaactca ccactgtcag 301 acaaccggaa gaaaccaaca cggcgttcag tgtcccccca ctcaaccaaa gggagagcag 361 ggacgccaag gagccattaa ctggaacaat cattgaaatg tgggatggag aaatctacca 421 ttacggcctg tacgtggaac gaggtcttat acttggtgtg cacaagccac cagcagccat 481 cagcctcgcc aaggtcgagc tggcaccgct ctctttgttc tggagacctg tatacacccc 541 ccagtacctt atctcaccag acactcttag gagattacat ggagagtcat tcccctacac 601 tgcatttgac aacaattgct acgccttttg ttgttgggta ttagacctaa acgactcatg 661 gctaagcagg agaatgattc agagaacaac aggcttcttc aggccgtacc aggattggaa 721 caggaaaccc ctccccacta tggatgattc caaattaaag aaggtagcca acatattctt 781 gtgcactttg tcttcactat tcaccagacc cattaaggac ataataggga agttgaaacc 841 tctcaacatc cttaatattc tggctacatg tgattggacc ttcgcaggca tagtggaatc 901 cttaatactc ttggcagaac tctttggagt tttctggaca cccccagatg tgtctgcgat 961 gatcgccccc ttgctaggtg attatgaact gcaaggaccc gaggaccttg cagtggaact 1021 ggtcccaata gtgatggggg ggataggttt ggtgctagga tttaccaaag agaaaatcgg 1081 aaagatgctg tcatccgctg catccacttt aagagcttgt aaagaccttg gtgcatacgg 1141 actagaaatc ttaaaactgg tcatgaagtg gttcttccca aagaaagagg aagcaaatga 1201 actggctatg gtgagatcca tcgaggatgc agtactagac ctcgaggcaa ttgaaaacaa 1261 ccacatgacc accctgctca aagacaaaga cagcttgaca acctacatga gaacccttga 1321 ccttgaggag gagaaagcca gaaaactctc aactaaatct gcttcacccg atattgtggg 1381 cacaatcaac tcccttctgg caagaatcgc tgctgcacgc tccctagtac atcgggcgaa 1441 agaagagctc tccagcaggc cgagacctgt cgttgtaatg atatcgggaa gaccagggat 1501 agggaaaact caccttgcca gggagctggc caagaagatc gcggcctccc tcacagggga 1561 ccagcgtgtg ggccttatcc cacgcaatgg tgtcgaccac tgggacgcat acaagggcga 1621 aagagttgtc ctatgggacg actatggaat gagcaacccc atccatgatg ccctcaggtt 1681 gcaggagctt gctgacactt gccccctcac gctaaattgt gacagaattg agaacaaggg 1741 aaaagtcttt gacagtgatg ccataattat caccaccaac ctggccaacc cagcaccact 1801 ggattatgtc aactttgaag cgtgctcgag acgcattgat ttcctcgtgt acgcagaagc 1861 ccctgaggtg gagaaggcaa agcgcgactt cccaggccaa cctgacatgt ggaagaacgc 1921 tttcagtcct gacttctcac acataaaact gtcattggct ccacagggtg gttttgacaa 1981 gaacggcaac accccgcatg gaaaaggggt catgaagacc ctcaccactg gctccctcat 2041 cgcccgagca tcagggttgc tccatgagag gctagatgaa tatgaattgc aaggcccagc 2101 cctcaccact ttcaactttg accgcaacaa gatacttgct tttagacagc ttgctgctga 2161 aaacaagtat gggctgatgg atacaatgag agttggaaaa cagctcaagg atgtcaagac 2221 tatgtcagac ctcaaacaag cactcaagaa catcgcgatc aagaagtgcc agatagtgta 2281 caatggtggc acctacacac ttgaggctga tggcaagggc agtgtgaaag ttgacaaagt 2341 gcaaagtgcc actgtgcaga ccaacaatga actagccggt gccctacacc acctgagatg 2401 cgctagaatt agatactatg ttaagtgcgt ccaggaggca ctgtattcca tcatccaaat 2461 cgctggggct gcattcgtca ccacgcgcat cgctaagcgc atgaatatac agaatctctg 2521 gtccaagcca caggtggaag acacagaaga gatggccaac aaagatggtt gcctaaaacc 2581 caaagatgat gaagagtttg tcgtttcatc cgacgacatc aaaactgagg gcaagaaagg 2641 gaagaacaag tccggccgtg gcaagaagca cacagccttt tcaagtaaag ggctcagtga 2701 tgaggagtac gatgagtaca aaagaatcag agaagaaaga aatggtaagt actccataga 2761 agagtacctt caggacagag acaggtacta cgaggaggtg gccattgcca gggcaaccga 2821 agaggacttc tgtgaagaag aagaggccaa aatccggcag aggattttca gaccaacaag 2881 gaaacaacgc aaagaagaga gggcctctct cggcttggtc acaggctctg aaatcaggaa 2941 gagaaaccca gaagacttca aacccaaggg aaagctgtgg gctgatgatg acaggagtgt 3001 tgactacaat gagaaactca actttgaggc cccaccaagc atctggtcgc ggatagtcaa 3061 ctttggttca ggctggggct tctgggtctc ccccagtctg tttataacat caactcatgt 3121 cataccccaa ggtgcaaaag agttcttcgg agtccctatc aagcaaatcc agatacacaa 3181 gtcaggtgaa ttctgccgat tgagattccc aaagccaatc agaaccgatg tgacgggcat 3241 gattctagaa gaaggtgcgc ccgaggggac tgtggccaca ctgctcatca agagaccaac 3301 tggagagctc atgcctctgg cagccagaat gggaacccat gcaaccatga aaattcaggg 3361 gcgcacagtt ggagggcaaa tgggtatgct cctgacagga tccaacgcca agagtatgga 3421 tctaggcaca acaccaggcg actgcggctg cccctacatc tacaagaggg ggaatgacta 3481 cgtggtcata ggggtccata cggccgctgc ccgtggagga aacactgtca tatgtgccac 3541 ccagggaagt gagggagagg ccacacttga aggaggtgac agtaaaggga catactgtgg 3601 cgcgccaatc ttgggcccag ggagcgctcc aaagctcagc accaagacta agttttggag 3661 atcatccaca acaccactcc cacctggcac ctacgagcca gcctacctcg gtggcaagga 3721 ccctagagtc aaaggtggcc cttcactgca acaagttatg agggaccagc tgaagccatt 3781 cacagaaccc aggggcaaac caccaagacc aaatgtgttg gaagctgcca agaaaaccat 3841 catcaatgtc cttgagcaaa caattgatcc acctcaaaaa tggtcatttg cgcaagcttg 3901 cgcatccctt gacaaaacca cctccagcgg ccacccgcac cacatgcgga aaaacgactg 3961 ttggaatggg gagtccttca caggaaaatt ggctgaccaa gcctccaagg ccaacctaat 4021 gttcgaagag ggaaagaaca tgactccagt ctacacaggt gcacttaaag atgagttggt 4081 aaagaccgat aaagtttatg gtaaggtcaa gaagaggctt ctgtggggtt cagatctggc 4141 gaccatgata cggtgcgccc gagcttttgg aggcctcatg gatgaactca aggcacactg 4201 tgtcacactc cctgtcagag ttggtatgaa catgaatgag gatggcccca tcatcttcga 4261 gaagcactcc agatacagat atcactatga tgctgactac tcccggtggg actcaacaca 4321 acaaagggat gtgctagcag cagcactaga aatcatggtt aagttctctc cagaaccaca 4381 cctggcccag gtagttgcag aagacctcct ctcccctagc gtgatggatg tgggtgactt 4441 tcaaatatca ataagtgagg gtctcccctc tggggtgcct tgtacctccc agtggaattc 4501 catcgcccac tggctcctca ctctgtgtgc actctctgaa gtcacggact tgtcccctga 4561 catcattcag gccaactccc ttttctcctt ctatggtgat gatgagattg taagcacaga 4621 cataaagttg gacccagaga ggctgacagc aaaactcaag gagtacgggc tgaaaccaac 4681 ccgccccgac aaaactgaag gaccccttgt tatctctgaa gacctggatg gtctgacatt 4741 cctccggaga actgtgaccc gtgatccagc tggctggttt ggaaaattgg aacaaagttc 4801 aattcttagg caaatgtact ggaccagggg tcccaaccat gaagatccat ttgaaacaat 4861 gataccacac tcccaaagac ccatacaatt gatgtccttg ctgggcgagg ctgcactcca 4921 cggcccggca ttctatagca aaattagcaa attagtcatt gcagagttga aggaaggtgg 4981 catggatttt tacgtaccca gacaggagcc aatgttcaga tggatgagat tctcagatct 5041 gagcacgtgg gagggcgatc gcaatctggc tcccagtttt gtgaatgaag atggcgtcga 5101 gtgacgccaa cccatctgat gggtccgcag ccaacctcgt cccagaggtc aacaatgagg 5161 ttatggctct ggagcccgtt gttggtgccg ccattgcggc acctgtagcg ggccaacaaa 5221 atgtaattga cccctggatt agaaacaatt ttgtacaagc ccctggtgga gagtttacag 5281 tgtcccctag aaacgctcca ggtgaaatac tatggagcgc gcccttgggc cctgatctaa 5341 atccctactt atctcatttg gccagaatgt acaatggtta tgcaggtggt tttgaagtgc 5401 aggtaattct cgcggggaat gcgttcaccg ccgggaaggt catatttgca gcagtcccac 5461 caaattttcc aactgaaggc ttgagcccca gccaggtcac tatgttcccc catatagtag 5521 tagatgttag gcaactagaa cctgtgttga ttcccttacc cgatgttagg aataatttct 5581 atcactacaa tcaatcaaat gaccccacta ttaagttgat agcaatgttg tatacaccac 5641 ttagggctaa taatgctggg gatgatgtct tcacagtttc ctgccgagtt ctcacgaggc 5701 catcccccga ttttgatttc atatttctag tgccacccac agttgagtca agaactaaac 5761 cattctccgt cccagtttta accgttgagg agatgaccaa ttcaagattc cccattcctt 5821 tggaaaagtt gttcacgggt cccagcagtg cctttgttgt tcaaccacaa aacggtaggt 5881 gcacgactga tggcgtgctc ctaggcacca cccaactgtc tcctgtcaac atctgcacct 5941 tcagaggaga tgtcacccat atcacaggta gtcataacta cacaatgaat ttggcttccc 6001 aaaattggag caattacgac ccaacagaag aaattccagc ccctctaggg actccagact 6061 ttgtggggaa gattcaaggc atgcttaccc aaaccacaag gacagatggc tcaacacgcg 6121 gccacaaagc cacagtgtac actgggagcg ccgactttgc tccaaaactg ggtagagttc 6181 aatttgaaac tgacacaaac aatgattttg aagctaacca aaacacaaag ttcaccccag 6241 ttggtgtcat ccaagatggt ggcaccaccc atcgaaatga accccaacag tgggtgctcc 6301 caagttactc aggcaggaac actcccaatg tgcatctagc ccccgctgta gcccccactt 6361 ttccgggtga gcaactcctc ttcttcagat ccaccatgcc cggatgcagc gggtacccca 6421 acatggattt ggattgtctg ctcccccagg aatgggtgca gtatttctac caagaggcag 6481 ccccagcaca atctgatgtg gctctgctaa gatttgtgaa tccagacaca ggtagggttt 6541 tgtttgaatg taagcttcat aaatcaggct atgttacagt ggctcacact ggccaacatg 6601 atttggttat ccctcccaat ggttatttta ggtttgattc ctgggtcaac cagttttaca 6661 cgcttgcccc catgggaaat ggagcggggc gtagacgtgc actataatgg ctggagcttt 6721 ctttgctgga ttggcatctg atgtccttgg ctctggactt ggttccctta tcaatgctgg 6781 ggctggggcc atcaatcaaa aagttgagtt tgaaaataac agaaaattgc aacaagcatc 6841 cttccaattt agcagcaatc tacaacaggc ttcctttcaa catgacaaag agatgctcca 6901 agcacaaatt gaggctacca aaaggttaca acaggaaatg atgaaagtta agcaggcaat 6961 gctcttagag ggtgggttct ctgagacaga tgcagcccgc ggggcaatca acgcccctat 7021 gacaaaagct ttggactgga gcggaacaag gtactgggct cctgatgcta ggactacaac 7081 atataatgca ggccgctttt ccacccccca accatcgggg gcgctgccag gaagagctaa 7141 tcttagggat gctgtccctg ctcggggttc ctctagtaag tcttctaatt cttctactgc 7201 tacttctgtg cactcaaatc aaactatttc aacgagactt ggttctacag ctggttctgg 7261 taccagtgtc tcgagcttcc cgtcaactgc aaggactagg agctgggttg aggatcaaag 7321 taggaatttg tcacctttca tgaggggggc ccacaacata tcgtttgtca ccccaccatc 7381 tagcagatcc tctagccaag gcacagtctc aaccgtgcct aaagagattt tggactcctg 7441 gactggcgct ttcaacacgc gcaggcagcc actcttcgct cacattcgta agcgagggga 7501 gtcacgggtg taatgt //