Typing tool
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Typing tool
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Complete norovirus genomes
| OR084260 | GII.4 Sydney | |
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| GII.P31 |
ORF1: 2..5101
ORF2: 5082..6704
ORF3: 6704..7510
LOCUS OR084260 7513 bp RNA linear VRL 10-JUN-2023
DEFINITION Norovirus GII isolate 2017-758 nonstructural polyprotein (ORF1),
VP1 (ORF2), and VP2 (ORF3) genes, complete cds.
ACCESSION OR084260
VERSION OR084260.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7513)
AUTHORS Sun,Z.
TITLE Direct Submission
JOURNAL Submitted (05-JUN-2023) Microbiological laboratory, 4.tYantai
Center for Disease Control and Prevention, 17 Fuhou Road, Laishan
District, Yantai 264003, China
COMMENT ##Assembly-Data-START##
Assembly Method :: Spades 3.15.5 v. MAY-2021
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7513
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="2017-758"
/isolation_source="feces"
/host="Homo sapiens"
/db_xref="taxon:122929"
/country="China"
/collection_date="Oct-2017"
/note="genotype: GII"
gene 2..5101
/gene="ORF1"
CDS 2..5101
/gene="ORF1"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="WIF39289.1"
/translation="MKMASNGASAAAVANSNNDIAKSSSDGVFSNMAVTFKRALGARP
KQPPPKETPPRPPRPPTPELVKKIPPPPPNGEDELVVSYSAKDGVSGLPELTTVRQPE
ETNTAFSVPPLNQRESRDAKEPLTGTIIEMWDGEIYHYGLYVERGLILGVHKPPAAIS
LAKVELAPLSLFWRPVYTPQYLISPDTLRRLHGESFPYTAFDNNCYAFCCWVLDLNDS
WLSRRMIQRTTGFFRPYQDWNRKPLPTMDDSKLKKVANIFLCTLSSLFTRPIKDIIGK
LKPLNILNILATCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPED
LAVELVPIVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFP
KKEEANELAMVRSIEDAVLDLEAIENNHMTTLLKDKDSLTTYMRTLDLEEEKARKLST
KSASPDIVGTINSLLARIAAARSLVHRAKEELSSRLRPVVVMISGRPGIGKTHLAREL
AKKIAASLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTC
PLTLNCDRIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEK
AKRDFPGQPDMWKNAFSPDFSHIKLSLAPQGGFDKNGNTPHGKGVMKTLTTGSLIARA
SGLLHERLDEYELQGPALPTFNFDRNKILAFRQLAAENKYGLMDTMRVGKQLKDVKTM
SDLKQALKNIAIKKCQIVYNGGTYTLEADGKGSVKVDKVQSATVQTNNELAGALHHLR
CARIRYYVKCVQEALYSIIQIAGAAFVTTRIAKRMNIQNLWSKPQVEDTEEMANKDGC
LKPKDDEEFVVSSDDIKTEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERNG
KYSIEEYLQDRDRYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLV
TGSEIRKRNPEDFKPKGKLWADDDRSVDYNEKLNFEAPPSIWSRIVNFGSGWGFWVSP
SLFITSTHVIPQGAKEFFGVPIKQIQIHKSGEFCRLRFPKPIRTDVTGMILEEGAPEG
TVATLLIKRPTGELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGD
CGCPYIYKRGNDYVVIGVHTAAARGGNTVICATQGSEGEATLEGGDSKGTYCGAPILG
PGSAPKLSTKTKFWRSSTTPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEP
RGKPPRPNVLEAAKKTIINVLEQTIDPPQKWSFAQACASLDKTTSSGHPHHMRKNDCW
NGESFTGKLADQASKANLMFEEGKNMTPVYTGALKDELVKTDKVYGKVKKRLLWGSDL
ATMIRCARAFGGLMDELKAHCVTLPVRVGMNMNEDGPIIFEKHSRYRYHYDADYSRWD
STQQRDVLAAALEIMVKFSPEPHLAQIVAEDLLSPSVMDVGDFQISISEGLPSGVPCT
SQWNSIAHWLLTLCALSEVTDLSPDIIQANSLFSFYGDDEIVSTDIKLDPERLTAKLK
EYGLKPTRPDKTEGPLVISEDLDGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGP
NHEDPFETMIPHSQRPIQLMSLLGEAALHGPAFYSKISKLVIAELKEGGMDFYVPRQE
PMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
mat_peptide 2..991
/gene="ORF1"
/product="p48"
mat_peptide 992..2089
/gene="ORF1"
/product="NTPase"
mat_peptide 2090..2626
/gene="ORF1"
/product="p22"
mat_peptide 2627..3025
/gene="ORF1"
/product="VPg"
mat_peptide 3026..3568
/gene="ORF1"
/product="Pro"
mat_peptide 3569..5098
/gene="ORF1"
/product="RdRp"
gene 5082..6704
/gene="ORF2"
CDS 5082..6704
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="WIF39290.1"
/translation="MKMASSDANPSDGSAANLVPEVNNEVMALEPVVGAAIAAPVAGQ
QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG
FEVQVILAGNAFTAGKVIFAAVPPNFPTEGLSPSQVTMFPHIVVDVRQLEPVLIPLPD
VRNNFYHYNQSNDPTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP
TVESRTKPFSVPVLTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT
QLSPVNICTFRGDVTHITGSHNYTMNLASQNWSNYDPTEEIPAPLGTPDFVGKIQGML
TQTTRTDGSTRGHKATVYTGSADFAPKLGRVQFETDTNNDFEANQNTKFTPVGVIQDG
GTTHRNEPQQWVLPSYSGRNTPNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD
CLLPQEWVQYFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV
IPPNGYFRFDSWVNQFYTLAPMGNGAGRRRAL"
gene 6704..7510
/gene="ORF3"
CDS 6704..7510
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="WIF39291.1"
/translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA
SFQFSSNLQQASFQHDKEMLQAQIEATKRLQQEMMKVKQAMLLEGGFSETDAARGAIN
APMTKALDWSGTRYWAPDARTTTYNAGRFSTPQPSGALPGRANLRDAVPARGSSSKSS
NSSTVTSVYSNQTISTRLGSTAGSGTSVSSSPSTARTRSWVEDQSRNLSPFMRGAHNI
SFVTPPSSRSSSQGTVSTVPKEILDSWTGAFNTRRQPLFAHIRKRGESRV"
ORIGIN
1 aatgaagatg gcgtctaacg gcgcttccgc tgccgctgtt gccaacagca acaacgacat
61 cgcaaaatct tcaagtgacg gtgtgttttc taacatggct gtcactttta agcgggccct
121 cggggcgcgg cctaaacagc cgcccccgaa ggaaacacca cccaggcccc cgcgaccacc
181 cacaccagaa ttggttaaaa agatccctcc tcccccaccc aacggggagg atgaactagt
241 ggtctcttac agcgccaaag atggcgtttc cggactgcct gagctcacca ctgtcagaca
301 accggaagaa accaacacgg cgttcagtgt ccccccactc aaccaaaggg agagcaggga
361 tgccaaggag ccattaactg gaacaatcat tgaaatgtgg gatggagaaa tctaccatta
421 cggcctgtac gtggaacgag gtcttatact tggtgtgcac aagccaccag cagccatcag
481 cctcgccaag gtcgagctgg caccgctctc tttgttctgg agacctgtat acactcccca
541 gtaccttatc tccccagaca ctcttaggag attacatgga gagtcattcc cctacactgc
601 atttgacaac aattgctacg ccttttgttg ttgggtatta gacctaaacg actcatggct
661 aagcaggaga atgattcaga gaacaacagg cttcttcagg ccgtaccagg attggaacag
721 gaaacccctc cccactatgg atgattccaa attaaagaag gtagccaaca tattcttgtg
781 cactttgtct tcactattca ccagacccat taaggacata atagggaagt tgaaacctct
841 caacatcctt aatattctgg ctacatgtga ttggaccttc gcaggcatag tggaatcctt
901 aatactcttg gcagaactct ttggagtttt ctggacaccc ccagatgtgt ctgcgatgat
961 cgcccccttg ctaggtgatt atgaactgca aggacccgag gaccttgcag tggaactggt
1021 cccaatagtg atggggggga taggtttggt gctaggattt accaaagaga aaatcggaaa
1081 gatgctgtca tccgctgcat ccactttaag agcttgtaaa gaccttggtg catacggact
1141 ggaaatctta aaactggtca tgaagtggtt cttcccaaag aaagaggaag caaatgaact
1201 ggctatggtg agatccatcg aggatgcagt actagacctc gaggcaattg aaaacaacca
1261 catgaccacc ctgctcaaag acaaagacag cttgacaacc tacatgagaa cccttgacct
1321 tgaggaggag aaagccagaa aactctcaac caaatctgct tcacccgata ttgtgggcac
1381 aatcaactct cttctggcaa gaatcgctgc tgcacgctcc ctagtacatc gggcgaaaga
1441 agagctctcc agcaggctga gacctgttgt tgtaatgata tcgggaagac cagggatagg
1501 gaaaactcac cttgccaggg agctggccaa gaagatcgcg gcctccctca caggggacca
1561 gcgtgtgggc cttatcccac gcaatggtgt cgaccactgg gacgcataca agggcgaaag
1621 agttgtccta tgggacgact atggaatgag caaccccatc catgatgccc tcaggttgca
1681 ggagcttgct gacacttgcc ccctcacgct aaattgtgac agaattgaga acaagggaaa
1741 agtctttgac agtgatgcca taattatcac caccaacctg gccaacccag caccactgga
1801 ttatgtcaac tttgaagcgt gctcgagacg cattgatttc ctcgtgtacg cagaagcccc
1861 tgaggtggag aaggcaaagc gcgacttccc aggtcaacct gacatgtgga agaacgcttt
1921 cagtcctgac ttctcacaca taaaactgtc attggctcca cagggtggtt ttgacaagaa
1981 cggcaacacc ccgcatggaa aaggggtcat gaagaccctc accactggct ccctcatcgc
2041 ccgagcatca gggttactcc atgagaggct agatgaatat gaattgcaag gcccagccct
2101 ccccactttc aactttgacc gcaacaagat acttgctttt agacagcttg ctgctgaaaa
2161 caagtatggg ctgatggata caatgagagt tggaaaacag ctcaaggatg tcaagactat
2221 gtcagacctc aaacaagcac tcaagaacat cgcgatcaag aagtgccaga tagtgtacaa
2281 tggtggcacc tacacacttg aggctgatgg caagggcagt gtgaaagttg acaaagtgca
2341 aagtgccact gtgcagacca acaatgaact agccggtgcc ctacaccacc taagatgcgc
2401 tagaattaga tactatgtta agtgcgtcca ggaggcactg tattccatca tccaaatcgc
2461 tggggctgca ttcgtcacca cgcgcatcgc caagcgcatg aatatacaaa atctctggtc
2521 caagccacag gtggaagaca cagaagagat ggccaataaa gatggttgcc taaaacccaa
2581 agatgatgaa gagtttgtcg tttcatccga cgacatcaaa actgagggca agaaagggaa
2641 gaacaagtcc ggccgtggca agaagcacac agccttttca agtaaagggc tcagtgatga
2701 ggagtacgat gagtacaaaa gaatcagaga agaaaggaat ggtaagtact ccatagaaga
2761 gtaccttcag gacagagaca ggtactacga ggaggtggcc attgccaggg caaccgaaga
2821 ggacttctgt gaagaagaag aggccaaaat ccggcagagg atcttcagac caacaaggaa
2881 acaacgcaaa gaagagaggg cctctctcgg cttggtcaca ggctctgaaa tcaggaagag
2941 aaacccagaa gacttcaaac ccaagggaaa gctgtgggct gatgatgaca ggagtgttga
3001 ctacaatgag aaactcaact ttgaggcccc accaagcatc tggtcgcgga tagtcaactt
3061 tggttcaggc tggggcttct gggtctcccc cagtctgttt ataacatcaa cccatgtcat
3121 accccaaggt gcaaaagagt tcttcggagt ccctatcaag caaatccaga tacacaagtc
3181 aggtgaattc tgccgattga gattcccaaa gccaatcaga accgatgtga cgggcatgat
3241 tctagaagaa ggtgcgcccg aggggaccgt ggccacactg ctcatcaaga gaccaactgg
3301 agagctcatg cctctggcag ccagaatggg aacccatgca accatgaaaa ttcaggggcg
3361 cacagttggg gggcaaatgg gtatgctcct gacaggatcc aacgccaaga gtatggatct
3421 aggcacaaca ccaggcgact gcggctgccc ctacatctac aagaggggga atgactacgt
3481 ggtcataggg gtccatacgg ccgctgcccg tggaggaaac actgtcatat gtgccaccca
3541 gggaagtgag ggagaggcca cacttgaagg aggtgacagt aaagggacat actgtggtgc
3601 gccaatcttg ggcccaggga gcgctccgaa gctcagcacc aagactaagt tttggagatc
3661 atccacaaca ccactcccac ctggcaccta cgaaccagcc tacctcggtg gcaaggaccc
3721 tagagtcaaa ggtggccctt cattgcaaca agttatgagg gaccagctga agccattcac
3781 agaacccaga ggcaaaccac caagaccaaa tgtgttggaa gctgccaaga aaaccatcat
3841 caatgtcctt gagcaaacaa ttgatccacc ccaaaaatgg tcatttgcgc aagcttgcgc
3901 atcccttgac aaaaccacct ccagcggcca cccgcaccac atgcggaaaa acgactgttg
3961 gaatggggag tccttcacag gaaaattggc tgaccaagcc tccaaggcca acctaatgtt
4021 tgaagaggga aagaacatga ctccagtcta cacaggtgca cttaaagatg agttggtaaa
4081 gaccgacaaa gtttatggta aggtcaagaa gaggcttctg tggggttcag atctggcgac
4141 catgatacgg tgcgcccgag cttttggagg cctcatggat gaactcaagg cacactgcgt
4201 cacactccct gtcagagttg gtatgaatat gaatgaggat ggccccatca tcttcgagaa
4261 gcactccaga tatagatatc actatgatgc tgactattcc cggtgggact caacacaaca
4321 aagggatgtg ctagcagcag cactagaaat catggttaag ttctctccag aaccacacct
4381 ggcccagata gttgcagaag acctcctctc ccctagcgtg atggatgtgg gtgactttca
4441 aatatcaata agtgagggtc tcccctctgg ggtgccttgt acctcccagt ggaattccat
4501 cgcccactgg ctcctcactc tgtgtgcact atctgaagtc acggacctgt cccctgatat
4561 cattcaggcc aactcccttt tctccttcta tggtgatgat gagattgtaa gcacagacat
4621 aaagttggac ccagagaggc tgacagcaaa actcaaggag tacgggctga aaccaacccg
4681 ccccgacaaa actgaaggac cccttgttat ctctgaagac ctggatggtc tgacattcct
4741 ccggagaact gtgacccgtg atccagctgg ctggtttgga aaattggaac aaagttcaat
4801 ccttaggcaa atgtactgga ccaggggtcc caaccatgaa gatccatttg aaacaatgat
4861 accacactcc caaagaccca tacaattgat gtccttgctg ggcgaggctg cactccacgg
4921 cccggcattc tacagcaaaa ttagcaaatt agtcattgca gagttgaagg aaggtggcat
4981 ggatttttac gtacccagac aagagccaat gttcagatgg atgagattct cagatctgag
5041 cacgtgggag ggcgatcgca atctggctcc cagttttgtg aatgaagatg gcgtcgagtg
5101 acgccaaccc atctgatggg tccgcagcca acctcgtccc agaggtcaac aatgaggtta
5161 tggctctgga gcccgttgtt ggtgccgcca ttgcggcacc tgtagcgggc caacaaaatg
5221 taattgaccc ctggattaga aacaattttg tacaagcccc tggtggagag ttcacagtat
5281 cccctagaaa cgctccaggt gaaatactat ggagcgcgcc cttgggccct gatctaaatc
5341 cctacttatc tcatttggcc agaatgtaca atggttatgc aggtggtttt gaagtgcagg
5401 ttattctcgc ggggaacgcg ttcaccgccg ggaaggtcat atttgcagca gtcccaccaa
5461 attttccaac tgaaggcttg agccccagcc aggttactat gttcccccat atagtagtag
5521 atgttaggca actagaacct gtgttgattc ccttacccga tgttaggaat aatttttatc
5581 attataatca atcaaatgac cccactatta agttgatagc aatgttgtat acaccactta
5641 gggctaataa tgctggggat gatgttttca cagtttcctg ccgagttctc acgaggccat
5701 cccccgattt tgatttcata tttctagtgc cacccacagt tgagtcaaga actaaacctt
5761 tttctgtccc agttttaact gttgaggaga tgaccaattc aagattccct attcctttgg
5821 aaaagttgtt cacgggtccc agcagtgcct ttgttgtcca accacaaaac ggtaggtgca
5881 cgactgatgg cgtgctccta ggcaccaccc aactgtctcc tgtcaacatc tgcaccttca
5941 gaggagatgt cacccatatc acaggtagtc ataactacac aatgaatttg gcttcccaaa
6001 attggagcaa ttacgaccca acagaagaaa ttccagcccc tctagggact ccagactttg
6061 tggggaagat tcaaggcatg cttacacaaa ccacaaggac agatggctca acacgcggcc
6121 acaaagccac agtgtacact gggagcgccg actttgctcc aaaactgggt agagttcaat
6181 ttgagactga cacaaacaat gattttgaag ctaaccaaaa cacaaagttc accccagttg
6241 gtgtcatcca agatggtggc accacccacc gaaatgaacc ccaacagtgg gtgctcccaa
6301 gttactcagg caggaacact cctaatgtgc atctagcccc cgctgtagct cccacttttc
6361 cgggtgagca actcctcttc ttcagatcca ccatgcccgg atgcagcggg taccccaaca
6421 tggatttgga ttgtctgctc ccccaggaat gggtgcagta tttctaccaa gaggcagccc
6481 cagcacaatc tgatgtggct ctgctaagat ttgtgaatcc agacacaggt agggttctgt
6541 ttgaatgtaa gcttcataaa tcaggctatg ttacagtggc tcacactggc caacatgatt
6601 tggttatccc ccccaatggt tattttaggt ttgattcctg ggtcaaccag ttttacacgc
6661 ttgcccccat gggaaatgga gcggggcgta gacgtgcact ataatggctg gagctttctt
6721 tgctggattg gcatctgatg tccttggctc tggacttggt tcccttatca atgctggggc
6781 tggggccatc aatcaaaaag ttgagtttga aaataacaga aaattgcaac aagcatcctt
6841 ccaatttagc agcaatctac aacaggcttc ctttcaacat gacaaagaga tgctccaagc
6901 acaaattgag gctaccaaaa ggttacaaca ggaaatgatg aaagttaagc aggcaatgct
6961 cttagagggt gggttctctg agacagatgc agcccgcggg gcaatcaacg cccctatgac
7021 aaaagctttg gactggagcg ggacaaggta ctgggctcct gatgctagga ctacaaccta
7081 caatgcaggc cgcttttcca ccccccaacc atcgggggcg ctgccaggaa gagctaatct
7141 tagggatgct gtccctgctc ggggttcctc tagtaagtct tctaattctt ctactgttac
7201 ttctgtgtac tcaaatcaaa ctatttcaac gagacttggt tctacagctg gttctggcac
7261 cagtgtctcg agctccccgt caactgcaag gactaggagc tgggttgagg atcaaagtag
7321 gaatttgtca cctttcatga ggggggctca caatatatcg tttgtcaccc caccatctag
7381 cagatcctct agccaaggca cagtctcaac cgtgcctaaa gagattttgg actcctggac
7441 tggcgctttc aacacgcgca ggcagccact cttcgctcac attcgtaagc gaggggagtc
7501 acgggtgtaa tgt
//