Typing tool
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Typing tool
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Complete norovirus genomes
| OR084255 | GI.3 | |
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| GI.P13 |
ORF1: 1..5384
ORF2: 5368..7002
ORF3: 7002..7649
LOCUS OR084255 7708 bp RNA linear VRL 10-JUN-2023
DEFINITION Norovirus GI isolate 2017-170 nonstructural polyprotein (ORF1)
gene, partial cds; and VP1 (ORF2) and VP2 (ORF3) genes, complete
cds.
ACCESSION OR084255
VERSION OR084255.1
KEYWORDS .
SOURCE Norovirus GI
ORGANISM Norovirus GI
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7708)
AUTHORS Sun,Z.
TITLE Direct Submission
JOURNAL Submitted (05-JUN-2023) Microbiological laboratory, 4.tYantai
Center for Disease Control and Prevention, 17 Fuhou Road, Laishan
District, Yantai 264003, China
COMMENT ##Assembly-Data-START##
Assembly Method :: Spades 3.15.5 v. MAY-2021
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7708
/organism="Norovirus GI"
/mol_type="genomic RNA"
/isolate="2017-170"
/isolation_source="feces"
/host="Homo sapiens"
/db_xref="taxon:122928"
/country="China"
/collection_date="Apr-2017"
/note="genotype: GI"
gene <1..5384
/gene="ORF1"
CDS <1..5384
/gene="ORF1"
/codon_start=3
/product="nonstructural polyprotein"
/protein_id="WIF39274.1"
/translation="HGVADVSNNNANTNNENIGSRLMAKIRGRIGPQRGETTTKIKDA
NMALDLLRRSQTPSPCRQTNDSAPKAQRDRPPRTASEVKRALGWDAEPEHQESTARAW
CDLSKEEKEEIMRNNERLFDAGGVTPSTLPSTFERTDSSSVTDEQQPVTWSSNGGVDL
GINELTTVRGPFWNMCPLPPLEARNSGPAKEPLIGDMVEFYEGHIFHYAIYIGQGKTI
GVHSPQAAFSIPRITIHPLVAWWRVCYIPTSQQRLTYEQLKELENEPWPYASITNNCY
EFCCKVMALDDTWLQRRLVTSGKFNHPTQDWSQDTPDFHQDSKLEMVRDAVLSAINGL
VSQPFKNILSKIKPLNVLNLLSNCDWTFMGVVELVVLLAELFDVFWTPPDISSFIASL
LPDFHLQGPEDLARDLVPLILGGIGLAIGFTRDKITKVMKSAVDGLRSATQLGQYGLE
IFSIIKKYFFGGDQTEKTLRGIEDAVIDMEVLSSTNVTQLVKDKKLAKAYMNVLDNEE
EKARKLSVRSADPHIVTSVNNLISRISMARSALAKAQAELTSRPRPVVIMMCGPPGIG
KTKAAEHLAGRLAAEIRPGGKVGLVPRESIDHWDGYHGEDVLLWDDYGMSKITEDCNK
LQAIADTAPLSLNCDRIENKGMQFSSDAIIITTNAPGPAPVDFVNLGPVCRRVDFLVY
CSAPEIEQTRRAHPGDTNAIKDLFKKDFSHLKMELAPQGGFDSQGNTPFGKGVMKTTT
LNRLLIQATALAMERQDEFQLQGAVYNFDEDRVAAFTNLARANGLGLISMATLGKKLR
SVKSMEGLRNALLGYKIGECDIIWNTRVYSVKSDGSNVTIKEKQAPSSPQHQAISTAT
LALSRLRAARALAYASCLQSAVLSILQVAGSALVVSRAVKRMFGTRTEQPILEGKHKE
HNCRVHRAEAAGHGPIGHDGIIERYGLCESEQEGEDDQTVELPTADKEGKNKGKTKKG
RGRKSNFNAFSRRGLSDEEYEEYKKVREEKGGNYSIQEYLEDRQRYEEELAEVQAGGD
GGIGETEAEIRHRVFYKSKSGLRKQRQEERRQLGLVSGTEIRKRKPIDWTPPKNDWSE
DTRTVNYDEHISFEAPPSIWSRVVKFGSGWGFWVSSTVFITTTHVIPPGAKEIFGENI
SNIAIHRVGEFTQFRFSKKMRPDLSGMVLEEGCPEGTVCTIMIKRDSGELLPLAVRMG
AVASMKIQGKLMHGQSGMLLTGANAKGMDLGTIPGDCGAPYIHKRGNDWVVCGVHAAA
TKSGNTVVCAIQGGEGEATLEGGDQNKGHYAGHPILRYGSGPSLSTKTKFWKSNPQPL
PPGTYEPAYLGGKDPRVEGGPSLQQVLRDQLKPFAEPRGRLPEAGLLEAAVETVTNAI
EQVMDTPVAWSYSDACMSLDKTTSSGYPHHKRKNDDWNGSSFVRELGDQAAHANSMYE
LGKSMKPVYTAALKDELVKPDKVYNKIKKRLLWGADLGTVIRAARAFGPFCEAIKPHV
IKLPIKVGMNAIEDGPLIYAEHSKYKYHFDADYTAWDSTQNREIMMESFNIMCKLTAN
PSLAAVVAQDLLSPSEMDVGDYVISVKDGLPSGFPCTSQVNSINHWIYTLCALSEVTG
LAPDVIQSQSYFSFYGDDEIVSTDIEFDSNRLTQVLKEYGLKPTRPDKTDGPIIVRQQ
VDGLVFLRRTISKDAIGYQGRLDRNSIERQLWWTRGPNHDDPFETLVPHTQRKVQLIS
LLGEAALHGEKFYRKIASRVIQEVKEGGLEIYIPGWQAMFRWMRFHDLSLWTGDRDLL
PDYVNDDGV"
mat_peptide <1..1199
/gene="ORF1"
/product="p48"
mat_peptide 1200..2288
/gene="ORF1"
/product="NTPase"
mat_peptide 2289..2888
/gene="ORF1"
/product="p22"
mat_peptide 2889..3308
/gene="ORF1"
/product="VPg"
mat_peptide 3309..3851
/gene="ORF1"
/product="Pro"
mat_peptide 3852..5381
/gene="ORF1"
/product="RdRp"
gene 5368..7002
/gene="ORF2"
CDS 5368..7002
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="WIF39275.1"
/translation="MMMASKDAPTNMDGTSGAGQLVPEANTAEPISMEPVAGAATAAA
TAGQVNMIDPWIMNNYVQAPQGEFTISPNNTPGDILFDLQLGPHLNPFLSHLAQMYNG
WVGNMKVKVLLAGNAFTAGKIIISCIPPGFVSQNISIAQATMFPHVIADVRVLEPIEV
PLEDVRNVLFHNNDNTPTMRLVCMLYTPLRASGSSSGTDPFVIAGRVLTCPSPDFSFL
FLVPPNVEQKTKPFSVPDLPLNVLSNSRVPSLIKLMMVSQDHGQMVQFQNGRVTLDGQ
LQGTTPTSASQLCKMRGTVYHASGGQGLNLTEIDGTPYHAFESPAPIGFPDIGDSDWH
INASPATAFGSGESVKRLDMEQGSSFAPHLGTVHYTNASYEANTDLICSLEWLSPPSG
GTPNKVNPWAIPRYGSTLTEAAQLAPPIYPPGFGEAIVFFMSDFPIANGQDGLRVPCT
IPQEFVTHFVNEQAPTRGEAALLHYVDPDTHRNLGEFKLYPEGFMTCVPNSSGSGPQT
LPINGVFTFVSWVSRFYQLKPVGTTGPVRRLGIRRS"
gene 7002..7649
/gene="ORF3"
CDS 7002..7649
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="WIF39276.1"
/translation="MAQAIFGAIAATAAGSAVGAGIQAGTEAALQHQRFQQDLTLQSN
TFKHDKEMLGLQVGASTALLQNSLNTRYNMLTNAGLSSSDAARVVVGAPATRVVDWNG
TRVSAPQSTATTLRSGGFMTIPTLYKGKQQQKAPTEIGLSNPNYGSSVSSRVADWVSS
QNSSRSSLGPYHPSALQTTWVTPPGSSSTSTISSVSTAPRYFNTDRLPLFANMRK"
ORIGIN
1 cccatggcgt tgctgatgtc agcaataaca atgctaacac caacaatgaa aacataggat
61 ctcgccttat ggcaaagatc cgtgggcgta taggcccaca acgtggtgaa acaaccacaa
121 agatcaaaga tgccaacatg gcgctcgacc ttttacgccg gtcacaaaca ccatccccat
181 gtcggcaaac taatgacagc gcccccaagg ctcaaaggga ccgtcccccg cggaccgctt
241 cagaggtaaa aagggcgctg gggtgggatg ctgaaccaga acaccaagaa agtacagcta
301 gggcatggtg tgacctctca aaagaggaga aggaagagat aatgcgtaac aatgagaggc
361 tttttgatgc tggaggtgtc actccatcga ccctgcccag cacatttgag aggactgatt
421 caagcagtgt cactgatgag caacaacctg tgacatggtc ttctaatgga ggggttgacc
481 ttggtatcaa tgaattgacc acagttcgtg gcccgttttg gaatatgtgc cccctcccac
541 cactagaagc ccgtaatagt ggccctgcta aggaacccct tataggtgac atggtcgagt
601 tctatgaagg acacatattc cattatgcca tttacatcgg acagggcaag actattggag
661 tccactcacc acaggccgct ttttccatac ccagaataac catccaccca ctggtggctt
721 ggtggcgtgt gtgttacatc cccactagcc aacaacgcct tacctacgaa cagcttaagg
781 agttggagaa tgaaccatgg ccctatgcct caatcaccaa caactgttat gagttttgct
841 gtaaagtgat ggcacttgat gatacctggc tccaaagaag actggttact agtggaaaat
901 ttaaccaccc tacacaggac tggtcacagg acaccccaga tttccatcag gattcgaagc
961 ttgaaatggt aagggacgct gtcttgtcgg ccattaacgg tcttgtatca caacccttta
1021 agaacatcct gtctaaaatt aaaccattaa atgtgcttaa tcttttatca aactgtgatt
1081 ggaccttcat gggcgtcgtg gaactggtag tgctcctggc agaactgttt gatgtgttct
1141 ggaccccacc agacatttca agcttcattg catctttact acctgatttt catctacaag
1201 gcccagaaga cctagccagg gacttagtcc ccctcatatt aggtggcata ggcttagcaa
1261 ttggttttac gagagacaaa ataacaaaag tgatgaagag tgccgttgat gggctgcggt
1321 cagcaacgca gctcggacaa tatggactgg agatattctc aattatcaag aaatacttct
1381 ttggagggga ccaaacagaa aagaccctgc gaggcattga agatgcggtg atagacatgg
1441 aagtgttgtc cagtaccaat gtgacacaac tggtcaaaga taagaagtta gccaaagctt
1501 acatgaatgt attggacaat gaggaggaaa aagcaagaaa gctctcagtc cgtagtgctg
1561 acccacatat agtgacctct gtcaacaact tgatatcacg catctctatg gcaagatcag
1621 ctctggctaa agcccaagct gagttgacgt cccgcccacg accagtggtt ataatgatgt
1681 gtggtcctcc tggtattgga aagactaagg ccgctgagca cctagccggc cgactagctg
1741 ctgaaatcag acctggaggt aaagttggcc ttgtgccccg ggagtccata gaccattggg
1801 atggatatca tggcgaggac gtcttgctct gggatgacta tggcatgtca aagataacag
1861 aggattgtaa taagttacag gctatagctg atactgcacc actgtcactt aattgtgaca
1921 gaatagaaaa caaaggcatg caattctctt ctgatgcaat aattataacc accaatgccc
1981 ctggcccagc cccagtcgac tttgtcaact taggccccgt gtgcagacga gtggactttt
2041 tagtttactg ttctgcaccc gagattgaac aaacgcggag ggctcatcca ggtgacacca
2101 atgccatcaa ggatctgttt aaaaaggact tctcacactt gaaaatggaa ctggctccac
2161 agggcggctt tgatagtcag ggcaacacac cttttgggaa gggtgtcatg aaaaccacaa
2221 ccctcaatag gctattgata caggccacag cattagccat ggagcgacaa gatgaattcc
2281 aactccaggg ggccgtctac aactttgacg aggatagagt ggccgctttc accaatctag
2341 ctcgagctaa tggcctgggg cttataagca tggcaacatt aggcaagaag ctgagaagtg
2401 ttaagtccat ggaaggcttg cgcaatgcac tactgggata caagattgga gagtgcgata
2461 taatctggaa caccagggtg tattcagtta agagtgacgg gagcaatgtc acaattaaag
2521 aaaagcaagc accgtcctca ccccaacatc aagctatttc cacagctacc ctggcgctct
2581 ctagactgcg ggctgctaga gcccttgcgt acgcttcctg tttacaaagt gcagtgttgt
2641 caatacttca ggttgccggc tctgccttag tggtgagcag ggctgtaaaa cgcatgtttg
2701 gcacacgcac cgaacagccc attctggagg gtaagcataa agaacacaac tgcagagtac
2761 accgtgcaga ggccgctggt catggcccca ttggccatga tggaatcatt gaacgttatg
2821 gcctgtgtga gagtgagcag gaaggagaag atgaccaaac tgtggagttg cccactgctg
2881 acaaagaagg caagaacaaa ggcaaaacca aaaagggccg cggacggaaa tccaacttca
2941 atgcattctc taggcgtgga cttagtgatg aggaatacga ggagtacaag aaagtaagag
3001 aagagaaggg tggcaactac agcatacaag agtaccttga ggaccgccaa cgctatgaag
3061 aagaactcgc tgaggtacaa gctggtggag atggtggaat cggcgaaact gaagctgaga
3121 tccgccaccg tgttttctat aaatcaaagt ctggcttgag aaaacaacgg caagaggagc
3181 gccgccagtt aggcctcgtg agcggtactg aaatccgcaa acgcaaaccc atagactgga
3241 ccccccccaa aaatgattgg tcagaggaca ctagaactgt taattatgat gaacacatca
3301 gctttgaagc ccccccttca atctggagta gagtagttaa atttggcagt ggctggggtt
3361 tttgggtgag ttcaacagtg ttcatcacca caacacatgt tataccacct ggtgctaaag
3421 agatctttgg tgagaacatt agcaatattg ccatccacag ggttggcgaa ttcacccaat
3481 tccgtttctc caagaaaatg aggcctgacc tctctggcat ggtcctggaa gagggatgcc
3541 ctgagggcac agtgtgcacc ataatgataa aaagagactc tggagaactg ttgccgctgg
3601 ctgttcgtat gggagcagtg gcctcaatga agatccaagg gaagctcatg catggacagt
3661 cagggatgtt gctcaccggt gctaatgcca agggcatgga ccttggtacc atacctgggg
3721 attgtggagc gccctatatc cataaaagag ggaatgactg ggtggtttgt ggggtgcatg
3781 cagcagccac gaaatcaggc aataccgtgg tgtgcgccat acaaggtggt gaaggtgaag
3841 ccacgctaga gggtggcgat caaaataagg gtcattatgc aggacaccca atactaagat
3901 atggtagtgg cccttcattg tcaactaaaa caaagttttg gaaatcaaac ccccaacctc
3961 taccccctgg tacatatgaa ccagcctacc tcggtggcaa agaccccagg gttgaaggtg
4021 gtccatcttt gcagcaagtg ttgcgagacc agctaaaacc atttgctgaa cctcgtggca
4081 ggttgcctga agcaggattg ctagaagctg cggttgaaac tgtcaccaat gcaattgaac
4141 aggtcatgga cacacctgtg gcatggagtt acagcgacgc ctgcatgtcc ttggacaaaa
4201 caaccagttc tggctaccct catcacaaaa ggaagaatga tgactggaac gggagttcat
4261 ttgtgagaga attgggagac caggcagcgc atgctaatag catgtatgag cttggtaaat
4321 ctatgaaacc agtgtacaca gcagcactca aggatgagct tgttaagcca gacaaggtgt
4381 acaataaaat taagaaaagg ctactctggg gggcggacct cggcaccgtc atacgtgctg
4441 ctagggcttt tgggccattt tgtgaagcaa taaagcccca tgtgattaag ttgcccatta
4501 aagtgggcat gaatgccata gaagatggac ccttaattta tgcagaacac tccaaatata
4561 agtatcactt tgatgctgat tacacagcat gggactcaac acaaaacagg gagattatga
4621 tggagtcctt taacattatg tgtaaactca ccgctaatcc ctccctggcc gcagtggtgg
4681 cacaggacct gctctctcct tctgagatgg atgtcggtga ttatgtgatc agtgtcaaag
4741 atggtctacc atctggcttt ccatgcacct cacaagtgaa cagtatcaac cattggatct
4801 acactttgtg tgccttatca gaggttactg gtttggctcc tgatgtaata cagtcacagt
4861 cttacttttc attttatggt gatgatgaaa tagtttcaac agatattgaa tttgactcaa
4921 acagactaac acaggtgcta aaagagtatg gtttaaaacc cacaagacct gataaaactg
4981 atggtccgat cattgtaagg caacaggttg atggcttggt tttccttcgg cgcaccatct
5041 cgaaggatgc catcgggtac cagggtcggc ttgatcgcaa ttccattgag agacagctct
5101 ggtggacccg agggcccaat catgatgatc catttgaaac cttggtccca cacacacaga
5161 ggaaggtcca attaatatcc ctattaggtg aggccgcgct ccatggtgag aaattttata
5221 gaaagatagc cagtagggtg atccaagagg ttaaagaagg aggattggaa atttacatcc
5281 ctgggtggca ggccatgttc cgctggatgc gattccatga tttgagtttg tggacaggag
5341 accgcgatct cctgcccgat tatgtaaatg atgatggcgt ctaaggacgc cccaacaaac
5401 atggatggca ccagtggtgc cggccagctg gtaccagagg caaatacagc tgagcctata
5461 tcaatggagc cagtggctgg ggcagcgaca gctgccgcaa ccgctggcca agttaacatg
5521 attgacccct ggattatgaa taattatgtg caagccccac aaggtgaatt caccatatca
5581 ccaaacaaca caccaggtga tattctattt gatttacaat taggccctca cctcaacccc
5641 tttctatccc atttggctca aatgtacaat gggtgggtag gtaacatgaa agtgaaagtc
5701 ctattggcag gtaatgcttt cacggcagga aaaattatta ttagttgtat accccctggt
5761 tttgtctcac agaatatatc tatagcccaa gctacaatgt tcccccacgt tatagctgat
5821 gtcagggtcc tggagcccat tgaggtccca ttggaggatg tgaggaatgt gttattccac
5881 aataatgata acacaccaac catgagactg gtatgcatgc tctacacccc cttgcgtgcc
5941 agcggaagct catctgggac agaccccttt gtgattgctg ggcgtgtgtt gacctgccct
6001 agccctgatt ttagcttctt atttttggtg ccccccaatg tagaacaaaa gactaaacct
6061 tttagtgttc cagatctccc actcaatgtt ctatcaaatt caagggtgcc gtcactgata
6121 aaactcatga tggtgtcaca ggaccatgga cagatggtac aatttcagaa tggcagggtc
6181 acactggatg gacagctcca gggcaccaca ccaacatcgg ccagccagct ctgcaagatg
6241 cgggggacgg tttaccatgc ctccggtggt caagggctca atttaactga gattgatggc
6301 actccctatc atgcatttga aagcccagct cccattggtt tccctgacat aggagacagt
6361 gattggcata tcaacgcttc acccgccacc gctttcggca gtggcgaaag cgtcaaaaga
6421 ctagatatgg aacagggctc ttcatttgcc ccacatttgg gtactgtaca ctatactaat
6481 gccagctatg aagctaacac tgacctgatc tgctcattgg agtggctgtc cccgcctagc
6541 ggaggcactc caaacaaagt caacccttgg gccattccac ggtatggttc aactttaact
6601 gaagctgctc agctagcccc accaatttac ccccctggct ttggagaagc tatagttttc
6661 tttatgtcag attttcctat agcaaatggt caagatgggt taagagtgcc ttgcactata
6721 ccccaagaat ttgtaaccca ttttgttaat gaacaagcac caacccgtgg ggaagctgcc
6781 ctccttcatt atgttgaccc cgacacacac cgcaatttag gtgagtttaa gttataccct
6841 gaaggattta tgacttgtgt accaaattct agtggtagtg gtccccaaac gctgcctatc
6901 aatggagtct tcacttttgt ctcttgggtt tcccgtttct atcaattaaa gcctgtggga
6961 acgaccggac cggttcgtag gctaggaatc aggagatcat aatggcccag gcaatatttg
7021 gagcaatagc tgcgacggct gctggtagcg ctgtgggtgc aggcattcag gctggtactg
7081 aggccgcact ccaacatcag cggttccagc aggatttaac gttgcagagc aacactttca
7141 aacacgacaa agaaatgcta gggctacagg ttggtgcctc cactgctctt ttgcaaaaca
7201 gcctcaacac ccgctacaac atgctcacaa atgctggtct ctcgtcctca gatgcagcac
7261 gcgtggtggt tggcgcgcca gctacacgtg ttgttgactg gaacggcacc agggtgtcag
7321 caccacaatc tacagctacc acgttgaggt ctggtgggtt catgacaatc ccaactctgt
7381 acaagggcaa acaacagcag aaagctccaa ctgaaattgg cttatctaac ccaaattatg
7441 gttcatctgt gtcttctagg gttgctgatt gggtttcctc tcaaaattct tctcgctcat
7501 ccttgggccc gtatcacccc agtgctttgc agacaacatg ggtgacccca cccggttcta
7561 gttctacttc tactatttct tctgtgtcta ctgcacctag atattttaat actgataggt
7621 tgcctctatt cgcaaatatg aggaaataat ttttgtaata tgaaatgtgg gcatcatatt
7681 caaattggat tttgaattac atttatta
//