Typing tool
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Typing tool
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Complete norovirus genomes
| OR084254 | GI.3 | |
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| GI.P13 |
ORF1: 6..5411
ORF2: 5395..7029
ORF3: 7029..7676
LOCUS OR084254 7731 bp RNA linear VRL 10-JUN-2023
DEFINITION Norovirus GI isolate 2017-310, complete genome.
ACCESSION OR084254
VERSION OR084254.1
KEYWORDS .
SOURCE Norovirus GI
ORGANISM Norovirus GI
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7731)
AUTHORS Sun,Z.
TITLE Direct Submission
JOURNAL Submitted (05-JUN-2023) Microbiological laboratory, 4.tYantai
Center for Disease Control and Prevention, 17 Fuhou Road, Laishan
District, Yantai 264003, China
COMMENT ##Assembly-Data-START##
Assembly Method :: Spades 3.15.5 v. MAY-2021
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7731
/organism="Norovirus GI"
/mol_type="genomic RNA"
/isolate="2017-310"
/isolation_source="feces"
/host="Homo sapiens"
/db_xref="taxon:122928"
/country="China"
/collection_date="Jun-2017"
/note="genotype: GI"
gene 6..5411
/gene="ORF1"
CDS 6..5411
/gene="ORF1"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="WIF39271.1"
/translation="MMMASNDAIAVADVSNNNANTNNENIGSRLMAKIRGRIGPQRGE
TTTKIKDANMALDLLRRSQTPSPCRQTNDSAPKAQRDRPPRTASEVKRALGWDAEPEH
QESTARAWCDLSKEEKEEIMRNNERLFDAGGVTPSTLPSTFERTDSSSVTDEQQPVTW
SSNGGVDLGINELTTVRGPFWNMCPLPPLEARNSGPAKEPLIGDMVEFYEGHIFHYAI
YIGQGKTIGVHSPQAAFSIPRITIHPLVAWWRVCYIPTSQQRLTYEQLKELENEPWPY
ASITNNCYEFCCKVMALDDTWLQRRLVTSGKFNHPTQDWSQDTPDFHQDSKLEMVRDA
VLSAINGLVSQPFKNILSKIKPLNVLNLLSNCDWTFMGVVELVVLLAELFDVFWTPPD
ISSFIASLLPDFHLQGPEDLARDLVPLILGGIGLAIGFTRDKITKVMKSAVDGLRSAT
QLGQYGLEIFSIIKKYFFGGDQTEKTLRGIEDAVIDMEVLSSTNVTQLVKDKKLAKAY
MNVLDNEEEKARKLSVRSADPHIVTSVNNLISRISMARSALAKAQAELTSRPRPVVIM
MCGPPGIGKTKAAEHLAGRLAAEIRPGGKVGLVPRESIDHWDGYHGEDVLLWDDYGMS
KITEDCNKLQAIADTAPLSLNCDRIENKGMQFSSDAIIITTNAPGPAPVDFVNLGPVC
RRVDFLVYCSAPEIEQTRRAHPGDTNAIKDLFKKDFSHLKMELAPQGGFDSQGNTPFG
KGVMKTTTLNRLLIQATALAMERQDEFQLQGAVYNFDEDRVAAFTNLARANGLGLISM
ATLGKKLRSVKSMEGLRNALLGYKIGECDIIWNTRVYSVKSDGSNVTIKEKQAPSSPQ
HQAISTATLALSRLRAARALAYASCLQSAVLSILQVAGSALVVSRAVKRMFGTRTEQP
ILEGKHKEHNCRVHRAEAAGHGPIGHDGIIERYGLCESEQEGEDDQTVELPTADKEGK
NKGKTKKGRGRKSNFNAFSRRGLSDEEYEEYKKVREEKGGNYSIQEYLEDRQRYEEEL
AEVQAGGDGGIGETEAEIRHRVFYKSKSGLRKQRQEERRQLGLVSGTEIRKRKPIDWT
PPKNDWSEDTRTVNYDEHISFEAPPSIWSRVVKFGSGWGFWVSSTVFITTTHVIPPGA
KEIFGENISNIAIHRVGEFTQFRFSKKMRPDLSGMVLEEGCPEGTVCTIMIKRDSGEL
LPLAVRMGAVASMKIQGKLMHGQSGMLLTGANAKGMDLGTIPGDCGAPYIHKRGNDWV
VCGVHAAATKSGNTVVCAIQGGEGEATLEGGDQNKGHYAGHPILRYGSGPSLSTKTKF
WKSNPQPLPPGTYEPAYLGGKDPRVEGGPSLQQVLRDQLKPFAEPRGRLPEAGLLEAA
VETVTNAIEQVMDTPVAWSYSDACMSLDKTTSSGYPHHKRKNDDWNGSSFVRELGDQA
AHANSMYELGKSMKPVYTAALKDELVKPDKVYNKIKKRLLWGADLGTVIRAARAFGPF
CEAIKPHVIKLPIKVGMNAIEDGPLIYAEHSKYKYHFDADYTAWDSTQNREIMMESFN
IMCKLTANPSLAAVVAQDLLSPSEMDVGDYVISVKDGLPSGFPCTSQVNSINHWIYTL
CALSEVTGLAPDVIQSQSYFSFYGDDEIVSTDIEFDSNRLTQVLKEYGLKPTRPDKTD
GPIIVRQQVDGLVFLRRTISKDAIGYQGRLDRNSIERQLWWTRGPNHDDPFETLVPHT
QRKVQLISLLGEAALHGEKFYRKIASRVIQEVKEGGLEIYIPGWQAMFRWMRFHDLSL
WTGDRDLLPDYVNDDGV"
mat_peptide 6..1226
/gene="ORF1"
/product="p48"
mat_peptide 1227..2315
/gene="ORF1"
/product="NTPase"
mat_peptide 2316..2915
/gene="ORF1"
/product="p22"
mat_peptide 2916..3335
/gene="ORF1"
/product="VPg"
mat_peptide 3336..3878
/gene="ORF1"
/product="Pro"
mat_peptide 3879..5408
/gene="ORF1"
/product="RdRp"
gene 5395..7029
/gene="ORF2"
CDS 5395..7029
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="WIF39272.1"
/translation="MMMASKDAPTNMDGTSGAGQLVPEANTAEPISMEPVAGAATAAA
TAGQVNMIDPWIMNNYVQAPQGEFTISPNNTPGDILFDLQLGPHLNPFLSHLAQMYNG
WVGNMKVKVLLAGNAFTAGKIIISCIPPGFVSQNISIAQATMFPHVIADVRVLEPIEV
PLEDVRNVLFHNNDNTPTMRLVCMLYTPLRASGSSSGTDPFVIAGRVLTCPSPDFSFL
FLVPPNVEQKTKPFSVPDLPLNVLSNSRVPSLIKFMMVSQDHGQMVQFQNGRVTLDGQ
LQGTTPTSASQLCKMRGTVYHASGGQGLNLTEIDGTPYHAFESPAPIGFPDIGDSDWH
INASPATAFGSGESVKRLDMEQGSSFAPHLGTVHYTNASYEANTDLICSLEWLSPPSG
GTPNKVNPWAIPRYGSTLTEAAQLAPPIYPPGFGEAIVFFMSDFPIANGQDGLRVPCT
IPQEFVTHFVNEQAPTRGEAALLHYVDPDTHRNLGEFKLYPEGFMTCVPNSSGSGPQT
LPINGVFTFVSWVSRFYQLKPVGTTGPVRRLGIRRS"
gene 7029..7676
/gene="ORF3"
CDS 7029..7676
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="WIF39273.1"
/translation="MAQAIFGAIAATAAGSAVGAGIQAGTEAALQHQRFQQDLTLQSN
TFKHDKEMLGLQVGASTALLQNSLNTRYNMLTNAGLSSSDAARVVVGAPATRVVDWNG
TRVSAPQSTATTLRSGGFMTIPTLYKGKQQQKAPTEIGLSNPNYGSSVSSRVADWVSS
QNSSRSSLGPYHPSALQTTWVTPPGSSSTSTISSVSTAPRYFNTDRLPLFANMRK"
ORIGIN
1 tgtgaatgat gatggcgtct aacgacgcta ttgccgttgc tgatgtcagc aataacaatg
61 ctaacaccaa caatgaaaac ataggatctc gccttatggc aaagatccgt gggcgtatag
121 gcccacaacg tggtgagaca accacaaaga tcaaagatgc caacatggcg ctcgaccttt
181 tacgccggtc acaaacacca tccccatgtc ggcaaactaa tgacagcgcc cccaaggctc
241 aaagggaccg tcccccgcgg accgcttcag aggtaaaaag ggcgctgggg tgggatgctg
301 aaccagaaca ccaagaaagc acagctaggg catggtgtga cctctcaaaa gaggagaagg
361 aagagataat gcgtaacaat gagaggcttt ttgatgctgg aggtgtcact ccatcgaccc
421 tgcccagcac atttgagagg actgattcaa gcagtgtcac tgatgagcaa caacctgtga
481 catggtcttc taatggaggg gttgaccttg gtatcaatga attgaccaca gttcgtggcc
541 cgttttggaa tatgtgcccc ctcccaccac tagaagcccg taatagtggc cctgctaagg
601 aaccccttat aggtgacatg gtcgagttct atgaaggaca catattccat tatgccattt
661 acatcggaca gggcaagact attggagtcc actcaccaca ggccgctttt tccataccca
721 gaataaccat ccacccactg gtggcttggt ggcgtgtgtg ttacatcccc actagccaac
781 aacgccttac ctacgaacag cttaaggagt tggagaatga accatggccc tatgcctcaa
841 tcaccaacaa ctgttatgag ttttgctgta aagtgatggc acttgatgat acctggctcc
901 aaagaagact ggttactagt ggaaaattta accaccctac acaggactgg tcacaggaca
961 ccccagattt ccatcaggat tcgaagcttg aaatggtaag ggacgctgtc ttgtcggcca
1021 tcaacggtct tgtatcacaa ccctttaaga acatcctgtc taaaattaaa ccattaaatg
1081 tgcttaatct tttatcaaac tgtgattgga ccttcatggg cgtcgtggaa ctggtagtgc
1141 tcctggcaga actgtttgat gtgttctgga ccccaccaga catttcaagc ttcattgcat
1201 ctttactacc tgattttcat ctacaaggcc cagaagacct agccagggac ttagtccccc
1261 tcatattagg tggcataggc ttagcaattg gttttacgag agacaaaata acaaaagtga
1321 tgaagagtgc cgttgatggg ctgcggtcag caacgcagct cggacaatat ggactggaga
1381 tattctcaat tatcaagaaa tacttctttg gaggggacca aacagaaaag accctgcgag
1441 gcattgaaga tgcggtgata gacatggaag tgttgtccag taccaatgtg acacaactgg
1501 tcaaagataa gaagttagcc aaagcttaca tgaatgtact ggacaatgag gaggaaaaag
1561 caagaaagct ctcagtccgt agtgctgacc cacatatagt gacctctgtc aacaacttga
1621 tatcacgcat ctctatggca agatcagctc tggctaaagc ccaagctgag ttgacgtccc
1681 gcccacgacc agtggttata atgatgtgtg gtcctcctgg tattggaaag actaaggccg
1741 ctgagcacct agccggccga ctagctgctg aaatcagacc tggaggtaaa gttggccttg
1801 tgccccggga gtccatagac cattgggatg gatatcatgg cgaggacgtc ttgctctggg
1861 atgactatgg catgtcaaag ataacagagg attgtaataa gttacaggct atagctgata
1921 ctgcaccact gtcacttaat tgtgacagaa tagaaaacaa aggcatgcaa ttctcttctg
1981 atgcaataat tataaccacc aatgcccctg gcccagcccc agtcgatttt gtcaacttag
2041 gccccgtgtg cagacgagtg gactttttag tttactgttc tgcacccgag attgaacaaa
2101 cgcggagggc tcatccaggt gacaccaatg ccatcaagga tctgtttaaa aaggacttct
2161 cacacttgaa aatggaactg gctccacagg gcggctttga tagtcagggc aacacacctt
2221 ttgggaaggg tgtcatgaaa accacaaccc tcaataggct attgatacag gccacagcat
2281 tagccatgga gcgacaagat gaattccaac tccagggggc cgtctacaac tttgacgagg
2341 atagagtggc cgctttcacc aatctagctc gagctaatgg cctggggctt ataagcatgg
2401 caacattagg caagaagctg agaagtgtta agtccatgga aggcttgcgc aatgcactac
2461 tgggatacaa gattggagag tgcgatataa tctggaacac cagggtgtat tcagttaaga
2521 gtgacgggag caatgtcaca attaaagaaa agcaggcacc gtcctcaccc caacatcaag
2581 ctatttccac agctaccctg gcgctctcta gactgcgggc tgctagagcc cttgcgtacg
2641 cttcctgttt acaaagtgca gtgttgtcaa tacttcaggt tgccggttct gccttagtgg
2701 tgagcagggc tgtaaaacgc atgtttggca cacgcaccga acagcccatt ctggagggta
2761 agcataaaga acacaactgc agagtacacc gtgcagaggc cgctggtcat ggccccattg
2821 gccatgatgg aatcattgaa cgttatggtc tgtgtgagag tgagcaggaa ggagaagatg
2881 accaaactgt ggagttgccc actgctgaca aagaaggcaa gaacaaaggc aaaaccaaaa
2941 agggccgcgg acggaaatcc aacttcaatg cattctctag gcgtggactt agtgatgagg
3001 aatacgagga gtacaagaaa gtaagagaag agaagggtgg caactacagc atacaagagt
3061 accttgagga ccgccaacgc tatgaagaag aactcgctga ggtacaagct ggtggagatg
3121 gtggaatcgg cgaaactgaa gctgagatcc gccaccgtgt tttctataaa tcaaagtctg
3181 gcttgagaaa acaacggcaa gaggagcgcc gccagttagg cctcgtgagc ggtactgaaa
3241 tccgcaaacg caaacccata gactggaccc cccccaaaaa tgattggtca gaggacacta
3301 gaactgttaa ttatgatgaa cacatcagct ttgaagcccc cccttcaatc tggagtagag
3361 tagttaaatt tggcagtggc tggggttttt gggtgagttc aacagtgttc atcaccacaa
3421 cacatgttat accacctggt gctaaagaga tctttggtga gaacattagc aatattgcca
3481 tccatagggt tggcgaattc acccaattcc gtttctccaa gaaaatgagg cctgacctct
3541 ctggcatggt cctggaagag ggatgccctg agggcacagt gtgcaccata atgataaaaa
3601 gagactctgg agaactgttg ccgctggctg ttcgtatggg agcagtggcc tcaatgaaga
3661 tccaagggaa gctcatgcat ggacagtcag ggatgttgct caccggtgct aatgccaagg
3721 gcatggacct tggtaccata cctggggatt gtggagcgcc ctatatccat aaaagaggga
3781 atgactgggt ggtttgtggg gtgcatgcag cagccacgaa atcaggcaat accgtggtgt
3841 gcgccataca aggtggtgaa ggtgaagcca cgctagaggg tggcgatcaa aataagggtc
3901 attatgcagg acacccaata ctaagatatg gtagtggccc ttcattgtca actaaaacaa
3961 agttttggaa atcaaacccc caacctctac cccctggtac atatgaacca gcctacctcg
4021 gtggcaaaga ccccagggtt gaaggtggtc catctttgca gcaagtattg cgagaccagc
4081 taaaaccatt tgctgaacct cgtggcaggt tgcctgaagc aggattgcta gaagctgcgg
4141 ttgaaactgt caccaatgca attgaacagg tcatggacac acctgtggca tggagttaca
4201 gcgacgcctg catgtccttg gacaaaacaa ccagctctgg ctaccctcat cacaaaagga
4261 agaatgatga ctggaacggg agttcatttg tgagagaatt gggagaccag gcagcgcatg
4321 ctaatagcat gtatgagctt ggtaaatcta tgaaaccagt gtacacagca gcactcaagg
4381 atgagcttgt taagccagac aaggtgtaca ataaaattaa gaaaaggcta ctctgggggg
4441 cggacctcgg caccgtcata cgtgctgcta gggcttttgg gccattttgt gaagcaataa
4501 agccccatgt gattaagttg cccattaaag tgggcatgaa tgccatagaa gatggaccct
4561 taatttatgc agaacactcc aaatataagt atcactttga tgctgattac acagcatggg
4621 actcaacaca aaacagggag attatgatgg agtcctttaa cattatgtgt aaactcaccg
4681 ctaatccctc cctggccgca gtggtggcac aggacctgct ctctccttct gagatggatg
4741 tcggtgatta tgtgatcagt gtcaaagatg gtctaccatc tggctttcca tgcacctcac
4801 aagtgaacag tatcaaccat tggatctaca ctttgtgtgc cttatcagag gttactggtt
4861 tggctcctga tgtaatacag tcacagtctt acttttcatt ttatggtgat gatgaaatag
4921 tttcaacaga tattgaattt gactcaaaca gactaacaca ggtgctaaaa gagtatggtt
4981 taaaacccac aagacctgat aaaactgatg gtccgatcat tgtaaggcaa caggttgatg
5041 gcttggtttt ccttcggcgc accatctcga aggatgccat cgggtaccag ggtcggcttg
5101 atcgcaattc cattgagaga cagctctggt ggacccgagg gcccaatcat gatgatccat
5161 ttgaaacctt ggtcccacac acacagagga aggtccaatt aatatcccta ttaggtgagg
5221 ccgcgctcca tggtgagaaa ttttatagaa agatagccag tagggtgatc caagaggtta
5281 aagaaggagg attggaaatt tacatccctg ggtggcaggc catgttccgc tggatgcgat
5341 tccatgattt gagtttgtgg acaggagacc gcgatctcct gcccgattat gtaaatgatg
5401 atggcgtcta aggacgcccc aacaaacatg gatggcacca gtggtgccgg ccagctggta
5461 ccagaggcaa atacagctga gcctatatca atggagccag tggctggggc agcgacagct
5521 gccgcaaccg ctggccaagt taatatgatt gacccctgga ttatgaataa ttatgtgcaa
5581 gccccacaag gtgaattcac catatcacca aacaacacac caggtgatat tctatttgat
5641 ttacaattag gccctcacct caaccccttt ctatcccatt tggctcaaat gtacaatggg
5701 tgggtaggta acatgaaagt gaaagtccta ttggcaggta atgctttcac ggcaggaaaa
5761 attattatta gttgtatacc ccctggtttt gtctcacaga atatatctat agcccaagct
5821 acaatgttcc cccacgttat agctgatgtc agggtcctgg agcccattga ggtcccattg
5881 gaggatgtga ggaatgtgtt attccacaat aatgataaca caccaaccat gagactggta
5941 tgcatgctct acaccccctt gcgtgccagc ggaagctcat ctgggacaga cccctttgtg
6001 attgctgggc gtgtgttgac ctgccctagc cctgatttta gcttcttatt tttggtgccc
6061 cccaatgtag aacaaaagac taaacctttt agtgttccag atctcccact caatgttcta
6121 tcaaattcaa gggtgccgtc actgataaaa ttcatgatgg tgtcacagga ccatggacag
6181 atggtacaat ttcagaatgg cagggtcaca ctggatggac agctccaggg caccacacca
6241 acatcggcca gccagctctg caagatgcgg gggacggttt accatgcctc cggtggtcaa
6301 gggctcaatt taactgagat tgatggcact ccctatcatg catttgaaag cccagctccc
6361 attggtttcc ctgacatagg agacagtgat tggcatatca acgcttcacc cgccaccgct
6421 ttcggcagtg gcgaaagcgt caaaagacta gatatggaac agggctcttc atttgcccca
6481 catttgggta ctgtacacta tactaatgcc agctatgaag ctaacactga cctgatctgc
6541 tcattggagt ggctgtcccc gcctagcgga ggcactccaa acaaagtcaa cccttgggcc
6601 attccacggt atggttcaac tttaactgaa gctgctcagc tagccccacc aatttacccc
6661 cctggctttg gagaagctat agttttcttt atgtcagatt ttcctatagc aaatggtcaa
6721 gatgggttaa gagtgccctg cactataccc caagaatttg taacccattt tgtcaatgaa
6781 caagcaccaa cccgtgggga agctgccctc cttcattatg ttgaccccga cacacaccgc
6841 aatttaggtg agtttaagtt ataccctgaa ggatttatga cttgtgtacc aaattctagt
6901 ggtagtggtc cccaaacgct gcctatcaat ggagtcttca cttttgtctc ttgggtttcc
6961 cgtttctatc aattaaagcc tgtgggaacg accggaccgg ttcgtaggct aggaatcagg
7021 agatcataat ggcccaggca atatttggag caatagctgc gacggctgct ggtagcgctg
7081 tgggtgcagg cattcaggct ggtactgagg ccgcactcca acatcagcgg ttccagcagg
7141 atttaacgtt gcagagcaac actttcaaac acgacaaaga aatgctaggg ctacaggttg
7201 gtgcctccac tgctcttttg caaaacagcc tcaacacccg ctacaacatg ctcacaaatg
7261 ctggtctctc gtcctcagat gcagcacgcg tggtggttgg cgcgccagct acacgtgttg
7321 ttgactggaa cggcaccagg gtgtcagcac cacaatctac agctaccacg ttgaggtctg
7381 gtgggttcat gacaatccca actctgtaca agggcaaaca acagcagaaa gctccaactg
7441 aaattggctt atctaaccca aattatggtt catctgtgtc ttctagggtt gctgattggg
7501 tttcctctca aaattcttct cgctcatcct tgggcccgta tcaccccagt gctttgcaga
7561 caacatgggt gaccccaccc ggttctagtt ctacttctac tatttcttct gtgtctactg
7621 cacctagata ttttaatact gataggttgc ctctattcgc aaatatgagg aaataatttt
7681 tgtaatatga aatgtgggca tcatattcaa ttggatttga ttaattatta a
//