Typing tool
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Typing tool
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Complete norovirus genomes
| OR062612 | GII.17 | |
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| GII.P17 |
ORF1: 5..5113
ORF2: 5094..6716
ORF3: 6716..7495
LOCUS OR062612 7561 bp RNA linear VRL 04-JUN-2023
DEFINITION Norovirus GII isolate Hu/NI/2017/GII.17[P17]/NIC4691, complete
genome.
ACCESSION OR062612
VERSION OR062612.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norovirus norwalkense.
REFERENCE 1 (bases 1 to 7561)
AUTHORS Diez-Valcarce,M., Bucardo,F., Becker-Dreps,S., Montmayeur,A.M.,
Vinje,J. and Chhabra,P.
TITLE Direct Submission
JOURNAL Submitted (30-MAY-2023) Viral Gastroenteritis Branch, Centers for
Disease Control and Prevention, 1600 Clifton Road NE, Atlanta, GA
30329, USA
COMMENT ##Assembly-Data-START##
Assembly Method :: Geneious v. v. 11.1.2; SPAdes v. v. 3.6
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7561
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="Hu/NI/2017/GII.17[P17]/NIC4691"
/isolation_source="stool"
/host="Homo sapiens"
/db_xref="taxon:122929"
/geo_loc_name="Nicaragua"
/collection_date="29-Nov-2017"
/note="genotype: GII.17[P17]"
gene 5..5113
/gene="ORF1"
CDS 5..5113
/gene="ORF1"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="WIA63860.1"
/translation="MKMASNDASAAVAGKNNNNDKEKSSSDSLFANMSVTFKKALGAR
SKQPPPGEIKQTQKPPRPPTPELVKRIPPPPPNGEDEPGIVYKVGEGVSGLPDLTTVV
QPDAQNTAYSVPPLSQREVGEAKEPLPGSILEMWDGEIYHYGLYVERGHVLGVHKPPA
AISLAKIEITPLSLYWRVVYTPQYLIDPGTLKNLSGETFPYTAFDNNCYAFCCWVLDL
NDSWLSRRMIQRTTGFFKPYQDWNRKPLPTMDEPKIKKAANAVLCALSSLFTRPIKDI
IGKLRPLNILNILATCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYEMQG
PEDLAVELVPVVMGGIGLVLGFTKEKIGKMLSSAATTLRACKDLGSYGLEILKLVMKW
FFPKKEEANELAMVRAIEDAVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARK
LSTKSASPDIVGTINALLARIAAARSLVHKAKEELSSRQRPVVVMISGRPGIGKTHLA
RELAKKVASTLSGDQRIGLVPRNGVDHWDAYKGERVVLWDDYGMSNPIQDALRLQELA
DTCPLTLNCDRIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYADAPD
IEKAKRDFPGQPDMWKDHFRPDFSHIKLQLAPQGGFDKNGNTPHGKGVVKSLTIGSLI
ARASGLLHERMDEFELQGSDLPTFNFDRNKVAAFRQLAAENKYGLMDTLRVGNQLKSV
KTLDELKQAIKNISIKKCQIVYNGCTYTMESDGRGKVVVEKVQNATVQTNNELVGALH
HLRSARIRYYVKCFQEAIYSLLQIAGAAFVTSRIVRRMNVSNLWSKPPIEESDEPEDR
GGCPKPRDGDDLTIDSRDIKVEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREE
RNGKYSIEEYLQDRDRYYEELAIAKATEEDFCEEEEIKIRQRIFRPTRKQRKEERATL
GLVTGSEIRKRNPDDFKPKGKLWADDNRSVDYNERIDFEAPPSVWSRIVNFGTGWGFW
VSPSLFITSTHVIPKGITEAFGVPINQIQIHKSGEFCRLRFPKPIRPDVSGMILEEGA
PEGTVVSILIKRTTGELMPLAVRMGTHATMKIQGRTVGGQMGMLLTGSNAKGMDLGTT
PGDCGCPYLYKRGNDLVVIGVHTAAARGGNTVICATQGSEGEATLEGGDNKGTYCGAP
ILGPGNAPKLSTKTKFWRSSNAPLPPGTYEPAYLGGRDPRVKGGPSLQQVMRDQLKPF
TEPRGKPPNPNVLESAKKTIINVLEQTIDPPQKWSYAQACASLDKTTSSGYPHHVRKN
DYWSGESFTGKLADQASKANLMYEEGKHMQPVYTAALKDELVKTDKIYGKIKKRLLWG
SDLSTMIRCARAFGGLMDEFKANCITLPIRVGMNMNEDGPIIFEKHSRYRYHYDADYS
RWDSTQQRAVLEAALEIMVRFSAEPQLAQIVAEDLLSPSVVDVGDFKIAINEGLPSGV
PCTSQWNSIAHWLLTLCALSEVTGLGPDIIQANSMYSFYGDDEIVSTDIKLDPEKLTA
KLKEYGLKPTRPDKTEGPLVISEDLNGLTFLRRTVTRDPAGWFGKLDQNSILRQLYWT
RGPNHEDPSETMIPHAQRPVQLMALLGESSLHGPSFYSKVSKLVISELKEGGMDFYVP
RQESMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
mat_peptide 5..1003
/gene="ORF1"
/product="p48"
mat_peptide 1004..2101
/gene="ORF1"
/product="NTPase"
mat_peptide 2102..2638
/gene="ORF1"
/product="p22"
mat_peptide 2639..3037
/gene="ORF1"
/product="VPg"
mat_peptide 3038..3580
/gene="ORF1"
/product="Pro"
mat_peptide 3581..5110
/gene="ORF1"
/product="RdRp"
gene 5094..6716
/gene="ORF2"
CDS 5094..6716
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="WIA63861.1"
/translation="MKMASNDAAPSNDGAAGLVPEGNNETLPLEPVAGAAIAAPVTGQ
NNIIDPWIRTNFVQAPNGEFTVSPRNSPGEILLNLELGPDLNPYLAHLSRMYNGYAGG
VEVQVLLAGNAFTAGKILFAAVPPNFPVEFLSPAQITMLPHLIVDVRTLEPIMIPLPD
VRNTFFHYSNQPNSRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPTPDFEFTYLVPP
SVESKTKPFSLPILTLSELTNSRFPVPIDSLFTAQNNVLQVQCQNGRCTLDGELQGTT
QLLPTGICAFRGRVTAQINQRDRWHMQLQNLNGTTYDPTDDVPAPLGTPDFKGVVFGM
VSQRNVGNDAPGSTRAQQAWVSTYSPQFVPKLGSVNLRISNNDDFQFQPTKFTPVGVN
DDDDDHPFRQWELPNYSGELTLNMNLAPPVAPNFPGEQLLFFRSFVPCSGGYNQGIID
CLIPQEWIQHFYQESAPSQSDVALIRYVNPDTGRTLFEAKLHRSGYITVAHSGDYPLV
VPANGHFRFDSWVNQFYSLAPMGTGNGRRRAQ"
gene 6716..7495
/gene="ORF3"
CDS 6716..7495
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="WIA63862.1"
/translation="MAGAFIAGLAGDMLTSSVGSLVNAGANAINQKIDFENNKQLQSA
SFQHDKEMLQAQVRATKQLQSEMIALKQGVLAAGGFSPTDAARGSIGAPMTKVLDWSG
TRYWAPNSTKTTGYSGQFTSSPVHMSSPNAPQSKPAKPRSLAPSSSSSSVYSMYTQST
HLTSGSSSNASSASTKLTNLSSGSSQNRTAEWVNQQRSLSPFMSGALNISHVTPPSSR
ASSSGTVSTVPKEVLDSWTSAFNTHRQPLFAHLRVRGESRV"
ORIGIN
1 gtgaatgaag atggcgtcta acgacgcttc cgctgccgtt gctggcaaaa acaacaacaa
61 cgacaaggaa aaatcttcaa gtgacagctt gtttgctaac atgtccgtca cttttaagaa
121 agccctcggg gcgcggtcta aacaaccgcc cccgggagaa ataaaacaaa cacaaaaacc
181 accaaggcca ccgacaccgg aattggtgaa gagaatacct ccacccccac ccaatggcga
241 ggatgaacca gggatagtgt acaaggtggg agagggtgtg tctgggctgc ccgacctaac
301 aactgtggta caacctgacg cacaaaacac agcttatagt gttcccccac ttagccagag
361 agaagtcggc gaagctaaag aaccgctgcc tggctccatt ctggaaatgt gggatggtga
421 gatctaccac tatgggctgt atgttgagcg ggggcatgtg ctcggagtac acaaaccacc
481 tgctgcaata agccttgcca aaattgaaat aacaccgctg tctctctact ggagagtggt
541 ctacactccc cagtatttga tagatccagg aactcttaag aacttgagtg gagagacttt
601 cccatacacg gcctttgaca acaactgtta tgccttctgt tgttgggtcc tagacctcaa
661 cgactcctgg cttagcagga gaatgatcca aagaacaact ggattcttca aaccttatca
721 ggattggaac agaaaaccct taccaaccat ggatgaacca aaaatcaaga aggccgcgaa
781 tgctgtccta tgcgctctct cctcactctt cactagaccc attaaggaca tcattggaaa
841 gcttagacca ctgaacattc ttaatatact ggcaacctgc gattggactt ttgcaggcat
901 agtggaatcc ttgatccttc ttgctgaact ctttggggtg ttctggacac ccccagatgt
961 gtctgcgatg attgctccct tactcggtga ctacgagatg caaggccccg aagacctggc
1021 cgtggaactt gtgcccgtgg tgatgggagg aataggtttg gtgttaggat tcactaaaga
1081 aaagatcggc aagatgcttt catcagctgc gaccacactt agggcctgca aggatctagg
1141 atcttatgga ttggagatac tcaaattggt catgaagtgg ttcttcccca agaaggagga
1201 ggctaatgaa ctagccatgg tgagggccat tgaggatgca gtcctggatt tggaggcaat
1261 agaaaacaat cacatgacca cccttctcaa ggataaagac agcctggcca catacatgag
1321 gactcttgac ttggaagaag agaaagcaag gaaactgtca accaaatcgg cgtcacctga
1381 catcgtgggt acaataaacg cattgttggc tagaatagca gccgccaggt cactggtcca
1441 caaggctaag gaggagctct cgagcagaca gagacctgtt gttgtaatga tatcaggtag
1501 accaggtata ggaaagaccc atctggccag agagctagcc aagaaagttg cgtcaacact
1561 gtcaggcgac caaaggattg gactggtacc taggaatggc gtcgaccatt gggacgccta
1621 caagggagaa agggtggtcc tgtgggatga ttatggtatg agcaacccta tacaggacgc
1681 actgaggctc caagaattgg ctgacacctg tcctctaacc ctaaattgtg ataggattga
1741 aaacaaagga aaagtgttcg acagtgatgc cataattata acaaccaacc ttgcaaaccc
1801 agcaccacta gactatgtca actttgaggc ctgctctaga cgcatagact tcttggtgta
1861 tgcagacgca cctgacattg agaaggctaa gcgtgacttc cctggccaac cagatatgtg
1921 gaaagaccat ttcagaccag acttctcaca cattaaactt cagctggcac cacagggagg
1981 ttttgacaaa aatggcaata ccccacatgg caaaggtgtg gtaaagtccc tgacgattgg
2041 ttctctgatc gccagggcct ccggcttgct ccacgagaga atggatgaat ttgagctcca
2101 aggctctgac ctgccaacct tcaattttga ccgcaacaaa gtcgccgcct tcagacaatt
2161 agcagctgaa aacaaatatg gtcttatgga cacattgagg gtcggtaacc aactgaaaag
2221 tgttaagacc ctggatgagc tgaagcaggc cataaagaac atcagtatca agaagtgtca
2281 gatagtgtat aatggatgca cctataccat ggaatctgat gggaggggca aggttgtggt
2341 tgaaaaggta caaaacgcaa cagttcaaac caacaatgaa cttgtggggg cgctccacca
2401 cctgagatct gcaaggataa gatattatgt taaatgtttc caagaagcca tttactctct
2461 actccaaatt gctggtgcag cctttgtcac ctcacgcatc gtgaggcgca tgaacgtatc
2521 aaacctctgg tcgaagccac ccatcgagga gagtgatgag cctgaagaca gaggaggatg
2581 ccccaagccc agggatggag atgacctcac tattgactct agagacatta aagtggaagg
2641 gaagaagggc aagaacaagt ctggccgggg caagaaacac acagccttct cttccaaggg
2701 cctcagtgat gaagagtacg atgagtacaa gagaatcaga gaggagagga atggcaaata
2761 ctcaatagag gaatacctcc aggataggga cagatactat gaagagcttg ccattgctaa
2821 ggccactgag gaggacttct gtgaggagga ggagatcaaa atccgccaga gaatcttccg
2881 acccaccagg aagcagcgga aagaggaaag ggccacgctt gggcttgtca caggatcgga
2941 aatcagaaag aggaatccag atgactttaa accaaaagga aaattgtggg ctgatgacaa
3001 caggagcgtg gattacaatg agaggataga ttttgaggct cccccgagtg tttggtctag
3061 gatagtcaac tttggcacag gctggggatt ctgggtttct ccaagtctct ttataacttc
3121 aacacacgtc ataccaaaag gaatcactga ggcctttgga gtgcccataa accaaatcca
3181 aattcacaaa tctggagaat tttgccgctt gcggtttcca aagccaatta gaccagacgt
3241 gagtgggatg atcttggaag agggcgcccc tgaaggcact gttgtgtcta ttctcatcaa
3301 aaggacaaca ggggagctga tgcctcttgc agtcagaatg gggactcatg ccacaatgaa
3361 aatccaaggt agaacggtgg gtggtcagat gggtatgctt ctcactggct caaatgctaa
3421 aggcatggat ctaggcacaa cgccaggtga ctgcggatgt ccatacttat acaaaagggg
3481 caatgacctt gtggtcattg gggtgcacac tgcagcagct cgtggaggca acacggtcat
3541 atgtgccaca cagggaagtg aaggtgaagc cactcttgaa ggaggtgaca acaagggtac
3601 ctattgtgga gcccccattt tggggcctgg caatgcacca aaattgagca caaagacaaa
3661 attctggaga tcctctaacg caccgcttcc cccaggcact tatgaaccag cataccttgg
3721 tgggagagac ccgcgcgtga agggaggtcc atctctgcaa caagttatga gagaccaact
3781 taaacctttt acagagccca gagggaagcc accaaaccca aatgtcttag agtcagcaaa
3841 gaagactatc atcaatgttc tggaacaaac cattgacccc cctcaaaagt ggtcatatgc
3901 ccaagcctgt gcatccctcg acaagacaac ctccagtgga tacccgcacc acgtccggaa
3961 gaatgactat tggagtggtg aatccttcac aggaaaactt gcagatcagg cttcaaaagc
4021 aaatctcatg tatgaggaag gcaagcacat gcaaccagtt tacaccgcag cactcaaaga
4081 cgagctcgtg aaaactgaca agatttacgg caaaatcaag aaaagactcc tgtggggttc
4141 tgacctctcc acaatgattc gatgcgccag agcatttggt ggtctcatgg atgaattcaa
4201 agcaaactgt attacactcc ctatcagagt tggtatgaat atgaatgaag atggtcccat
4261 aatatttgag aaacactcca ggtacaggta ccactatgat gctgattact cccgctggga
4321 ctccacacaa cagcgggcag tgctggaagc ggcacttgaa atcatggtga gattttctgc
4381 tgagccacag ctggcacaaa tagtggcaga ggacctgctg tcaccaagtg tggttgatgt
4441 gggcgacttc aaaatcgcta tcaatgaagg cctaccatct ggcgtgcctt gcacctcaca
4501 atggaactct attgcccact ggttacttac tttgtgtgcc ctttctgaag tgacaggatt
4561 aggtcctgac atcatacaag ctaactccat gtactctttc tatggtgatg atgagattgt
4621 gagcacagac ataaaattgg acccagagaa attgaccgca aagctcaagg aatatggcct
4681 taaacccact cggcccgaca aaactgaggg gccgttggtg attagtgagg acttgaatgg
4741 gttgactttc ctccgccgaa cagtcacccg tgatccagca ggttggtttg gaaagttgga
4801 ccaaaactcc atcctcaggc agttgtactg gacaagagga cccaaccatg aagaccccag
4861 tgagaccatg ataccacacg cacaaagacc tgtgcagctc atggcactac taggagaatc
4921 ctccctacat ggaccctcat tttacagcaa ggttagcaaa ttagtcatat ctgaacttaa
4981 agagggagga atggattttt atgtgcccag acaagagtca atgttcagat ggatgaggtt
5041 ctcagatcta agcacatggg agggcgatcg caatctggct cccagttttg tgaatgaaga
5101 tggcgtcgaa tgacgccgct ccatctaatg atggtgctgc tggtctcgta ccagagggca
5161 acaacgagac ccttccccta gaaccagttg cgggcgcagc tatagccgca cccgtcactg
5221 gccaaaataa tataattgac ccctggatta gaacaaattt tgtgcaagca ccaaatggag
5281 agttcacagt gtcacccaga aactctcctg gagaaattct attaaattta gagttgggcc
5341 ctgatttgaa cccttatttg gctcatttgt caaggatgta caatgggtat gctggtggag
5401 tggaagttca ggttctcctg gcagggaacg cgttcactgc cggaaagatc ctcttcgccg
5461 ccgtcccgcc aaatttccca gtggaattct taagcccagc ccagatcaca atgctcccac
5521 atttaatagt agatgttagg actcttgaac caattatgat cccactccct gatgttagga
5581 atacattctt tcattatagt aatcagccta acagccgcat gagattagtg gctatgctct
5641 ataccccact cagatctaat ggctcaggtg atgatgtctt tactgtctct tgcagggttt
5701 tgactaggcc tactcccgac tttgagttca cttatttagt gccaccttct gttgaatcta
5761 aaactaagcc tttttcctta cctattttaa ccctttctga gctcacaaat tcgaggtttc
5821 cagtccccat cgattcgctt ttcaccgccc agaataatgt gttgcaggtg cagtgtcaaa
5881 atggcaggtg tacacttgat ggtgagttac aaggcacaac ccagttgctc ccaactggca
5941 tctgtgcatt cagaggacgg gtgacagcac aaattaacca acgtgacagg tggcacatgc
6001 aactgcaaaa cctcaatggt acaacatatg acccaactga tgatgtgcca gccccgctgg
6061 gtacacctga cttcaagggc gtcgtgtttg ggatggtaag ccaaagaaat gtgggtaatg
6121 atgcgcctgg ctcaaccaga gcccaacagg cgtgggtttc aacctatagc ccccaatttg
6181 tccccaaatt aggttctgtc aatcttagaa ttagtaataa tgatgatttc caattccagc
6241 cgacaaaatt cacaccagtg ggcgtcaatg atgacgatga tgaccacccg ttcagacagt
6301 gggaactacc aaactattca ggggagctta ccttgaatat gaatcttgcc cccccagttg
6361 ctccaaattt tcctggtgaa caattgttat tcttcaggtc tttcgtgcca tgttcaggag
6421 gttacaacca aggtattata gattgtctta ttccccaaga atggatccaa catttctatc
6481 aggaatcagc accctcccag tcagacgtgg ccctaatcag gtatgtcaac cccgacacgg
6541 gacgcacact gtttgaagca aaattgcaca gatctggtta tattactgtg gctcactctg
6601 gagactatcc tcttgttgtt ccggctaatg gacactttag atttgattct tgggtaaatc
6661 agttttactc actcgcccca atgggaactg ggaatgggcg aagaagggct cagtaatggc
6721 tggggctttc attgcaggat tggcaggcga catgctcacg tcatctgtgg gctcccttgt
6781 gaacgcaggg gcaaacgcca tcaaccaaaa gatagacttt gaaaacaaca aacaactcca
6841 gtctgcttcc tttcagcatg ataaagagat gctccaagcg caggtgaggg caaccaagca
6901 gctgcaatct gaaatgatag ccctaaaaca gggggttttg gccgcaggcg gcttttcccc
6961 cactgatgca gcgaggggat ccattggtgc acccatgaca aaggtgcttg actggtctgg
7021 cactcgatac tgggcgccca attccacaaa gacaactggc tattcgggac aatttacctc
7081 ttcacctgtg catatgtcta gcccaaatgc tccacaatca aaacctgcaa agcctaggtc
7141 tctagctcct tcctcttctt ctagcagtgt ctatagtatg tatactcaat ctactcattt
7201 gacatctggc tcttctagta atgcttcttc tgcctctaca aaattgacaa atttaagctc
7261 tggctcctct caaaacagga cagcagagtg ggtaaatcaa cagagaagtc ttagcccttt
7321 catgagtggc gcacttaaca tctcacatgt cacgccaccc tcaagtaggg cttccagttc
7381 tgggacggtc tcgaccgtgc ccaaggaagt tttggactcc tggacgtctg cgtttaacac
7441 acacagacag ccgctcttcg cacacctcag agtgaggggg gagtcacgtg tttagtgaaa
7501 agaaataatt ggctataatg tgatttcttt ctaaatttgg ctaatttgca tcttttaaaa
7561 a
//