Typing tool
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Typing tool
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Complete norovirus genomes
| OR050586 | GIX.1 | |
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| GII.P15 |
ORF1: 5..5101
ORF2: 5082..6749
ORF3: 6749..7480
LOCUS OR050586 7550 bp RNA linear VRL 12-SEP-2023
DEFINITION Norovirus GIX isolate JS230205/CHN/2023, complete genome.
ACCESSION OR050586
VERSION OR050586.1
KEYWORDS .
SOURCE Norovirus GIX
ORGANISM Norovirus GIX
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7550)
AUTHORS Jiang,C., Fu,J. and Ai,J.
TITLE Genetic characterization of norovirus GIX.1[GII.P15] genotype
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7550)
AUTHORS Jiang,C., Fu,J. and Ai,J.
TITLE Direct Submission
JOURNAL Submitted (26-MAY-2023) Key Laboratory of Enteric Pathogenic
Microbiology, Jiangsu Provincial Center for Disease Control and
Prevention, Jiangsu Rd, 172, Nanjing, Jiangsu 210009, China
COMMENT ##Assembly-Data-START##
Assembly Method :: CLC v. 21.0
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7550
/organism="Norovirus GIX"
/mol_type="genomic RNA"
/isolate="JS230205/CHN/2023"
/isolation_source="feces"
/host="Homo sapiens"
/db_xref="taxon:2594528"
/country="China"
/collection_date="24-Feb-2023"
/note="genotype: GIX.1[GII.P15]"
gene 5..5101
/gene="ORF1"
CDS 5..5101
/gene="ORF1"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="WHV00915.1"
/translation="MKMASNDVVTALGSQKATNDSYSTPPPNKEEASVLANVKVGFKK
ILGAVPKAPKQHGSTQKPPVVEIDGVAMRVPSPPPNGEDAVHFVKETETIKGLPDLST
VENESEHSPYTVPPLSEREHRPATEPLPGTILEMWDGEFYHYSIYVDNGKALGVHKPP
AAISLATIDLTPISLYWRPVYTPPYLVHPETLKGLAGEKFPYTAFSNNCYNFCCWVLD
LNDSWLNRRSITRTTGFFKPYQSWNRKPLPTVDDGKIKKVANAVLCALGSLFSKPIKD
LLGKLKPLNLLNLLASCDWTFSGVVETVILAAELFNVFWTPPDVSNFIASIIGDFEMQ
GPEDLAVELVPVIMGGIGMVLGFTAEKIGRMLSSAASTLRACKDLGNYALDILKLVMK
WFFPKKEEKAEMETLRAIEDAILDMEAIGNNHLTTLLKDKDSLSAYMKTLDMEEEKAR
RLSTKSSSPDIVGTINAILARIAAARSLLHKAKEEMFSRARPVVVMVSGRPGIGKTYL
ARQLAKSIANSMSGDQRVGLVPRNGVDHWDAYRGERVVLWDDYGMGNTIKDALTLQEL
ADTCPVTLNCDRIENKGKMFDSDVIIITTNLVNPAPLDYVNFEACCRRIDFLVYAEAP
DIEKVKKDFPGQPDMWRDHFKADSSHIKLSLAPQGGFDKNGNTPHGKGTMKTLTLHSL
TARVMGLVCERKDEFQLQGDELQVYNFDTNKVSAFRKLAADNKYSFVETMKVGAVLKN
VKTLEDLKSALKGVKFKECEIIYKGAKYRVASDGCGSVSVSKIKDVVSQTSNEVHTAL
LRLRQARARYYISCFQDLIYTLIQVAGASFVVHRISKRFSWDRWIKPSNSPQEEEQPS
SEVATGRWEIEPKDTDPEGKKGKNKKGRGRKHTAFSSKGLSDEEYDEFKRIREEKNGK
YSIEEYLQDRDRFYEEVAVARATEEDFCEEEVAKIRQRIFRPTKKQRKEERGVLGLVT
GSEIRKRRPDDFQPKGNLWADDTRSVDYNEKLEFEAPPSVWSRIVPLGTGWGFWVSSN
LLITTTHVLPKGLKELFGVDIKQVQIHKSGEFCRFRFPRPIRPDVTGLILEEGAPEGT
VCSILVKRPTGEMIPLAVRMGTHASMKIQGRTVGGQMGMLLTGANAKNMDLGTNPGDC
GCPYIFKRGNDIVVAGVHTAAARGGNTVICATQGADGEAVLEGGEDKGTYCGAPILGF
GKAPKLSTKTKFWRSSPDALPPGTYEPAYLGGKDPRVEKGPSLQQVMREQLKPFTEPR
GKPPKPNVLDEAKKTVMNVLEQTIDPAKPWSYSQACASLDKTTSSGSPHHLRKNDHWN
GESFTGPLADQASKANLMYEQAKHMSPVYTAALKDELVKTDKIYKKIKKRLLWGSDLG
TMVRCARAFGGLMDSMKESCVMLPCRVGMNMNEDGPIIFDKHAKYKYHYDADYSRWDS
TQQRSILSAAMEVMVKFSAEPELAQVVAEDLLAPSQLDVGDFVVSVQEGLPSGVPCTS
QWNSIAHWIITLSAMAEVSGLSPDVIQAHSCFSFYGDDEIVSTDINLDPAKLTLKLRE
YGLVPTRPDKTEGPLVITEDLHGLTFLRRHITRDPAGWFGKLDQDSILRQLYWTRGPN
HENPYECMVPHSQRATQLMALLGEASLHGPQFYKKVSKMVINEIKSGGLEFYVPRQEA
MFRWMRFSDLSTWEGDRNLAPDGVNEDGVE"
mat_peptide 5..1006
/gene="ORF1"
/product="p48"
mat_peptide 1007..2104
/gene="ORF1"
/product="NTPase"
mat_peptide 2105..2626
/gene="ORF1"
/product="p22"
mat_peptide 2627..3025
/gene="ORF1"
/product="VPg"
mat_peptide 3026..3568
/gene="ORF1"
/product="Pro"
mat_peptide 3569..5098
/gene="ORF1"
/product="RdRp"
gene 5082..6749
/gene="ORF2"
CDS 5082..6749
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="WHV00916.1"
/translation="MRMASSDAPVSGTDGAAGLVPESQQEVLPLEPVAGVQLAAPVAG
QSNIIDPWIRMNFVQAPAGEFTVSPRNAPGEVLIDLELGPELNPYLNHLARMYNGYVG
GMEVEVVLAGNAFTAGKILFAAVPPSFPTHGISAAQATMLPHVIVDVRQLEPVRLPLP
DVRNVMFHFCQENKEPRMRIVAILYTPLRANGAGDDVFTVSCRVLTRPSPDFDFIFLV
PPSVESKLKQFTLPNLQPNEMTNSRFPTGIMQLYTSPNANLVVQFQNGRCLLDGTLLG
TTPVRAADICSFRGVTSTEVDATDSPRVAGSHRIMVQLKEPDGEEFSPTGPNPAPVGT
PDFQAAIFGTLSQRNTGGAGQNSNRAHFAYFYTRNPTFAPGIGTVVFSFDTTDFQNRQ
PTKFSPSGVFDDDSSEPFNQFSLPYYNGSLGAVDAGKLAPPVAPNYPGEQILYFRGNI
PFKGGYGEGEIDSLLPQEWITHFYAEQAPTQGDAALLRYYNPDTGRVLFECKLHREGF
ITINYTGSNALAVPVNGVFRFEGWVNKFYTLTPMGNGNGRRGRRREL"
gene 6749..7480
/gene="ORF3"
CDS 6749..7480
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="WHV00917.1"
/translation="MAGAFFAGLASDVLGSGLSSLIGAGANAINQKVEYDYNRHLQSA
SFQHDKDMLNSQVEATKHLQREMMAIKEGMLLKGGFSPTDAARGAVNAPMTQILDWNG
TRYWAPGAMKTTAYSGRFVSQSTHRPIPNVVHKSDGPIHQTGSATGSFSSLSTSSTRV
PSSTSSSSSASRTRDWVSEQQRLSPFMRGSLHTAYVTPPSSSASSVSSVSTVPHYVLD
SWTPSFNTKHLPLFAHVRKRGQSQV"
ORIGIN
1 gtgaatgaag atggcgtcga atgacgtcgt tactgccctt ggcagccaga aagctaccaa
61 tgacagctat agcacacctc cccccaacaa ggaggaggct agtgtgcttg ccaacgttaa
121 agttggcttt aaaaagatcc tcggggccgt ccctaaggct ccgaaacagc atggcagcac
181 acaaaaaccg ccggtcgtcg agatcgatgg tgtggccatg cgtgtaccct ctcccccccc
241 aaacggtgag gacgcagtcc acttcgtaaa ggaaacggag accatcaagg gactgccaga
301 tttgtccacc gtggagaacg aatctgaaca ctccccgtac acagtccccc cgttgagtga
361 aagggagcac aggccagcaa cagagccatt gcccggcact atacttgaga tgtgggatgg
421 tgagttctac cactactcca tatacgtgga caatggcaag gcccttggag ttcacaaacc
481 accggcagca attagcctag caacgataga cttaacacct atatcgttgt actggagacc
541 ggtttacaca ccgccgtacc ttgtccaccc agagacgctc aagggactgg ctggcgaaaa
601 gttcccctac acggccttca gcaacaactg ctacaacttc tgttgctggg ttctggacct
661 caatgattcg tggttgaacc ggagatccat aactagaaca actggattct tcaaacccta
721 ccaatcctgg aacaggaagc ccctcccaac tgtggatgat ggcaagatca agaaggtcgc
781 gaatgcagtt ctgtgtgccc taggatcact tttctccaag cccattaagg acctccttgg
841 caaattaaaa cccctcaatc tcctgaactt gcttgcatca tgtgactgga ccttttcagg
901 cgtggtggaa acagtcatcc ttgctgcaga gctcttcaat gtcttttgga ccccacctga
961 tgtctccaac ttcatcgctt ccataattgg cgacttcgag atgcaaggac cagaggatct
1021 tgctgtggag cttgttcctg ttatcatggg aggtattggt atggtgttgg ggttcacagc
1081 tgagaagata gggcgtatgt tatcatctgc agcatccacc ctcagggctt gtaaggacct
1141 tggcaattac gccttagaca tcctgaaact agtcatgaag tggtttttcc ctaaaaagga
1201 ggaaaaggcc gagatggaaa ccctgagggc cattgaggac gctatccttg acatggaggc
1261 aattggaaac aaccacctca caacgctgct caaagacaaa gatagcttga gcgcctacat
1321 gaagaccttg gacatggagg aggagaaggc caggaggctc tccactaaat cgtcatcacc
1381 cgacattgtt ggcaccatca acgcgatcct cgcacgcatt gctgccgcaa ggtcactcct
1441 acacaaagcc aaagaggaaa tgttcagtcg ggcgaggcct gttgtcgtta tggtgtctgg
1501 aagacccggc atcggtaaga catatctagc tagacagctt gccaaatcga ttgcgaacag
1561 catgagtggt gatcagagag tgggactcgt tccccgcaat ggggttgacc actgggatgc
1621 ctataggggt gaaagagttg tcctatggga tgactacggc atgggaaata ctatcaaaga
1681 tgccctgacc ctacaagagt tggctgacac ctgcccagtc accctcaact gtgacaggat
1741 cgaaaacaag gggaagatgt ttgacagtga tgtcatcata ataacaacca atcttgtcaa
1801 ccccgctccc ctcgattatg ttaattttga ggcttgctgt aggcgaattg acttccttgt
1861 ttatgccgag gcaccggaca ttgagaaagt caaaaaggat ttccccgggc aacctgacat
1921 gtggcgtgac cattttaaag ctgactcgtc acacataaag ttatcactag ccccacaggg
1981 tggttttgac aagaacggaa acacccctca cgggaagggc accatgaaaa ctctcacgct
2041 acactcactc actgcacgtg tgatgggttt agtgtgtgag aggaaggatg agttccaact
2101 gcagggtgat gaactacagg tttataactt tgacacaaac aaggtctctg catttagaaa
2161 actagcagct gacaacaagt acagttttgt ggagacaatg aaagtcggtg cagtcctcaa
2221 gaatgtaaaa accctggaag atctgaaatc tgcgctaaag ggggttaaat tcaaagagtg
2281 tgaaataatt tacaaggggg ccaagtatag agttgcctcg gatggctgtg gcagtgtctc
2341 agtttccaag atcaaggatg ttgtgtcgca gacatccaat gaagtgcaca cagcgctcct
2401 gagattgagg caagcccggg ccaggtatta tatcagctgc ttccaagacc tcatatacac
2461 cctaatacag gttgctggag cctcctttgt ggtacatagg atctcaaaga gattctcatg
2521 ggaccgctgg atcaaaccca gtaacagccc tcaggaggaa gaacaaccca gcagtgaggt
2581 ggccacaggg agatgggaaa ttgagccaaa agacacggac cctgaaggta aaaagggtaa
2641 aaacaagaag ggaaggggaa ggaaacacac ggccttctct agtaagggtc ttagtgatga
2701 agagtatgat gagttcaaaa gaatcagaga ggagaagaac ggcaagtact ccatagaaga
2761 atacctccag gaccgtgaca gattttacga ggaagtggca gttgcaaggg caacggaaga
2821 ggacttctgt gaggaagaag tggcaaagat cagacagaga atcttcaggc ccacaaagaa
2881 gcagaggaag gaggagcgtg gcgtcctagg gctggtcact ggttcagaaa tcaggaagag
2941 aagaccagat gacttccagc ctaaaggtaa cttgtgggct gatgacacca ggagcgtgga
3001 ctacaacgaa aagctggagt ttgaggcccc tccgagcgtg tggtcacgta tcgtacccct
3061 cggcactggc tggggtttct gggtctcctc caaccttctc ataacaacaa cacacgtcct
3121 gccaaaagga ttgaaggagc tgttcggggt tgatatcaaa caagtccaga tacacaagtc
3181 aggtgagttc tgtaggttca ggtttccaag accaatcaga ccagatgtca caggcctcat
3241 ccttgaagaa ggggcccctg aaggtacggt gtgttccatc cttgtcaaaa gaccgactgg
3301 agaaatgatc ccacttgcag tgaggatggg cacccacgct tctatgaaaa tccagggtag
3361 aacggttggt ggtcaaatgg gcatgttgct cacaggagca aatgccaaaa acatggattt
3421 gggcacgaac cctggtgatt gtggatgccc gtacattttt aagaggggca atgacattgt
3481 ggtagctggg gtccacactg cagctgcacg gggtggcaac actgtgatct gtgccacgca
3541 aggagctgac ggagaggccg tccttgaagg aggagaggac aaggggacgt actgtggtgc
3601 cccaatactt ggattcggga aggcccccaa actcagtacc aagacaaagt tctggcgatc
3661 ctcccctgat gcgcttcccc cggggacgta tgagccagca tacctaggtg gaaaggaccc
3721 aagggttgag aagggcccgt cactccagca ggtcatgaga gaacaactta aaccttttac
3781 cgaacccaga ggaaaacccc caaaacccaa cgttcttgat gaggcaaaga aaactgtgat
3841 gaacgtgttg gagcagacta tagaccctgc caaaccctgg tcatactccc aagcatgtgc
3901 ttcgcttgac aagacaactt caagtggtag cccgcaccac ctgagaaaga atgatcattg
3961 gaatggtgaa tcttttaccg gtcctttggc cgatcaagct tcaaaagcaa acctaatgta
4021 tgaacaggct aaacacatga gtcccgttta cactgcggcc ctcaaagatg aactggtcaa
4081 gactgataag atctacaaga aaataaagaa gaggctgctg tggggctctg acctgggtac
4141 tatggtcagg tgtgctaggg cttttggtgg gttgatggat agcatgaaag agagttgtgt
4201 gatgttaccc tgcagagttg gtatgaacat gaatgaagat ggaccaatca tttttgacaa
4261 gcatgcaaag tacaaatatc actatgatgc agattactcc agatgggatt ccacacaaca
4321 aaggagcatt ttatctgctg ccatggaggt tatggtaaaa ttctcagctg aaccggaact
4381 ggcacaagtg gtcgctgaag acttgctcgc cccaagccaa ctcgacgtgg gcgactttgt
4441 ggtgtcagtt caagaaggtc ttccctcagg tgttccgtgt acttcccaat ggaactccat
4501 agcacattgg atcatcaccc ttagtgcaat ggcagaagtt tctggtctct ccccagatgt
4561 gatccaagct cactcatgct tctctttcta tggtgatgat gagatagtta gcacagacat
4621 caacttggac ccagcaaagt taaccttaaa actcagggaa tatggattgg tccccaccag
4681 accagacaaa actgaaggcc cattagtcat cacagaggat ctccatggat tgaccttcct
4741 acgcagacac atcacacgag atcctgctgg atggtttgga aaattagacc aggattcaat
4801 cttaaggcaa ctctattgga ctagaggacc caaccatgaa aacccctacg agtgcatggt
4861 cccacactca cagcgcgcaa ctcagttaat ggcgctgttg ggtgaggcat cattgcacgg
4921 tccccagttc tacaagaaag tcagcaagat ggttatcaat gagatcaaga gtggtggtct
4981 ggaattttac gtgcccagac aagaggccat gttcagatgg atgagattct ctgacctcag
5041 cacgtgggag ggcgatcgca atctggctcc cgacggtgtg aatgaggatg gcgtcgagtg
5101 acgcgcccgt ttctggcacc gatggtgcgg caggactcgt cccagagagt caacaagaag
5161 tcttgccttt agagcccgtc gcgggagtcc agctggctgc tcccgtagca gggcaaagta
5221 atataattga cccctggatt agaatgaatt ttgtgcaagc cccggccggt gagttcactg
5281 tttcccctcg gaacgcaccg ggtgaggtgc ttattgattt agaattagga ccagaattaa
5341 atccctatct caatcatctt gcaagaatgt acaatgggta tgtgggagga atggaggtgg
5401 aagttgtcct tgccgggaat gcgttcacgg cgggtaagat cttattcgca gcagtgcccc
5461 ccagcttccc aacccatggc atttctgcag cacaggcaac catgttacca catgtgattg
5521 tggatgtcag gcagctggag cctgtccggc tccctcttcc tgatgtcagg aatgtgatgt
5581 tccatttctg tcaagaaaat aaggagccgc gcatgagaat tgtggcaata ttgtacaccc
5641 ctctccgtgc caacggtgcg ggtgatgatg tcttcactgt ctcatgtcgt gtgctaacaa
5701 ggccctcacc agattttgat tttattttct tggttccccc ctctgtagag agtaagttga
5761 aacagttcac cctcccaaac ctgcagccaa atgaaatgac caattcaaga ttccccactg
5821 gcatcatgca actctacacc agtccaaatg ccaatttggt tgtccagttc caaaatggca
5881 ggtgtctgct tgatggcaca ctcctcggca ccacccctgt cagagctgct gacatctgca
5941 gtttcagagg agttacctca actgaagttg atgcaactga cagccccaga gtggcagggt
6001 cccatagaat tatggtgcag ctcaaggagc cagatggaga ggagttctca cccacaggtc
6061 ctaaccctgc ccctgttggc actccagact ttcaagcagc catatttggc acccttagcc
6121 aaagaaacac tggcggggct gggcagaact ccaacagagc ccacttcgca tacttctaca
6181 ctagaaaccc cacatttgca ccaggtatag ggacagttgt gttttctttt gatactactg
6241 actttcaaaa tcgccaacct actaaattct ctccttctgg tgtgtttgat gatgattctt
6301 ctgaaccttt taatcaattc tctctaccat attataatgg atcactcggt gcagtggatg
6361 ctgggaaact agctccgcct gtagcaccca actacccagg tgagcagatt ctttatttta
6421 gagggaatat tcccttcaaa ggtgggtatg gagagggtga aattgatagc ttgctccccc
6481 aggagtggat cacccatttt tatgcagagc aggctcccac acaaggtgac gcagccctgc
6541 tgcgttacta caaccctgac actggcagag tcctctttga gtgcaaactc caccgcgagg
6601 gattcatcac aatcaattac acagggtcca atgctcttgc tgtaccagtc aatggagtct
6661 tcagatttga gggctgggtt aacaaattct acacactgac ccccatggga aatggcaacg
6721 gccgcagggg tagaagaaga gagttataat ggctggagct ttctttgcag gtcttgcttc
6781 tgatgttctc ggcagcggtt tgtcttcact tattggtgcc ggtgccaatg ccataaatca
6841 aaaggttgaa tatgattaca ataggcactt gcagtcagct tctttccaac atgataagga
6901 tatgctcaac tcacaagtgg aagccacaaa gcatttacaa agggagatga tggccatcaa
6961 ggaaggcatg ctgctcaagg gtgggttctc ccccactgat gcagcaagag gagctgtcaa
7021 cgcccctatg acacaaattt tggactggaa tggcaccaga tactgggccc caggtgcaat
7081 gaaaaccacg gcttactcag gccgttttgt tagccaatcc actcacaggc ctatccccaa
7141 tgttgttcac aagagtgatg gacccataca tcaaactggg tcagccacag ggtccttctc
7201 ttctctctcc acatcatcca cccgtgttcc atcatccaca tcctcatcta gtagtgcttc
7261 tagaacaagg gactgggtgt ctgaacagca aaggctcagc cctttcatga gaggctctct
7321 tcacactgca tatgtgactc ctccctcaag ctctgcctcc tcagtaagct ctgtatctac
7381 agtcccacat tatgttctgg attcatggac cccttctttt aacactaagc atctaccttt
7441 gtttgctcat gttaggaaaa ggggacaatc tcaagtttaa tctaccactc atggtttgat
7501 tgatttgttt tgtaattagt gaaatgttga ttctttctaa ttcggcattt
//