Typing tool
|
Complete norovirus genomes
OR050584 | GIX.1 | ||
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GII.P15 |
ORF1: 5..5101 ORF2: 5082..6749 ORF3: 6749..7480LOCUS OR050584 7550 bp RNA linear VRL 12-SEP-2023 DEFINITION Norovirus GIX isolate JS230203/CHN/2023, complete genome. ACCESSION OR050584 VERSION OR050584.1 KEYWORDS . SOURCE Norovirus GIX ORGANISM Norovirus GIX Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 7550) AUTHORS Jiang,C., Fu,J. and Ai,J. TITLE Genetic characterization of norovirus GIX.1[GII.P15] genotype JOURNAL Unpublished REFERENCE 2 (bases 1 to 7550) AUTHORS Jiang,C., Fu,J. and Ai,J. TITLE Direct Submission JOURNAL Submitted (26-MAY-2023) Key Laboratory of Enteric Pathogenic Microbiology, Jiangsu Provincial Center for Disease Control and Prevention, Jiangsu Rd, 172, Nanjing, Jiangsu 210009, China COMMENT ##Assembly-Data-START## Assembly Method :: CLC v. 21.0 Sequencing Technology :: Illumina ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..7550 /organism="Norovirus GIX" /mol_type="genomic RNA" /isolate="JS230203/CHN/2023" /isolation_source="feces" /host="Homo sapiens" /db_xref="taxon:2594528" /country="China" /collection_date="24-Feb-2023" /note="genotype: GIX.1[GII.P15]" gene 5..5101 /gene="ORF1" CDS 5..5101 /gene="ORF1" /codon_start=1 /product="nonstructural polyprotein" /protein_id="WHV00909.1" /translation="MKMASNDVVTALGSQKATNDSYSTPPPNKEEASVLANVKVGFKK ILGAVPKAPKQHGSTQKPPVVEIDGVAMRVPSPPPNGEDAVHFVKETETIKGLPDLST VENESEHSPYTVPPLSEREHRPATEPLPGTILEMWDGEFYHYSIYVDNGKALGVHKPP AAISLATIDLTPISLYWRPVYTPPYLVHPETLKGLAGEKFPYTAFSNNCYNFCCWVLD LNDSWLNRRSITRTTGFFKPYQSWNRKPLPTVDDGKIKKVANAVLCALGSLFSKPIKD LLGKLKPLNLLNLLASCDWTFSGVVETVILAAELFNVFWTPPDVSNFIASIIGDFEMQ GPEDLAVELVPVIMGGIGMVLGFTAEKIGRMLSSAASTLRACKDLGNYALDILKLVMK WFFPKKEEKAEMETLRAIEDAILDMEAIGNNHLTTLLKDKDSLSAYMKTLDMEEEKAR RLSTKSSSPDIVGTINAILARIAAARSLLHKAKEEMFSRARPVVVMVSGRPGIGKTYL ARQLAKSIANSMSGDQRVGLVPRNGVDHWDAYRGERVVLWDDYGMGNTIKDALTLQEL ADTCPVTLNCDRIENKGKMFDSDVIIITTNLVNPAPLDYVNFEACCRRIDFLVYAEAP DIEKVKKDFPGQPDMWRDHFKADSSHIKLSLAPQGGFDKNGNTPHGKGTMKTLTLHSL TARVMGLVCERKDEFQLQGDELQVYNFDTNKVSAFRKLAADNKYSFVETMKVGAVLKN VKTLEDLKSALKGVKFKECEIIYKGAKYRVASDGCGSVSVSKIKDVVSQTSNEVHTAL LRLRQARARYYISCFQDLIYTLIQVAGASFVVHRISKRFSWDRWIKPSNSPQEEEQPS SEVATGRWEIEPKDTDPEGKKGKNKKGRGRKHTAFSSKGLSDEEYDEFKRIREEKNGK YSIEEYLQDRDRFYEEVAVARATEEDFCEEEVAKIRQRIFRPTKKQRKEERGVLGLVT GSEIRKRRPDDFQPKGNLWADDTRSVDYNEKLEFEAPPSVWSRIVPLGTGWGFWVSSN LLITTTHVLPKGLKELFGVDIKQVQIHKSGEFCRFRFPRPIRPDVTGLILEEGAPEGT VCSILVKRPTGEMIPLAVRMGTHASMKIQGRTVGGQMGMLLTGANAKNMDLGTNPGDC GCPYIFKRGNDIVVAGVHTAAARGGNTVICATQGADGEAVLEGGEDKGTYCGAPILGF GKAPKLSTKTKFWRSSPDALPPGTYEPAYLGGKDPRVEKGPSLQQVMREQLKPFTEPR GKPPKPNVLDEAKKTVMNVLEQTINPAKPWSYSQACASLDKTTSSGSPHHLRKNDHWN GESFTGPLADQASKANLMYEQAKHMSPVYTAALKDELVKTDKIYKKIKKRLLWGSDLG TMVRCARAFGGLMDSMKESCVMLPCRVGMNMNEDGPIIFDKHAKYKYHYDADYSRWDS TQQRSILSAAMEVMVKFSAEPELAQVVAEDLLAPSQLDVGDFVVSVQEGLPSGVPCTS QWNSIAHWIITLSAMAEVSGLSPDVIQAHSCFSFYGDDEIVSTDINLDPAKLTLKLRE YGLVPTRPDKTEGPLVITEDLHGLTFLRRHITRDPAGWFGKLDQDSILRQLYWTRGPN HENPYECMVPHSQRATQLMALLGEASLHGPQFYKKVSKMVINEIKSGGLEFYVPRQEA MFRWMRFSDLSTWEGDRNLAPDGVNEDGVE" mat_peptide 5..1006 /gene="ORF1" /product="p48" mat_peptide 1007..2104 /gene="ORF1" /product="NTPase" mat_peptide 2105..2626 /gene="ORF1" /product="p22" mat_peptide 2627..3025 /gene="ORF1" /product="VPg" mat_peptide 3026..3568 /gene="ORF1" /product="Pro" mat_peptide 3569..5098 /gene="ORF1" /product="RdRp" gene 5082..6749 /gene="ORF2" CDS 5082..6749 /gene="ORF2" /note="major capsid protein" /codon_start=1 /product="VP1" /protein_id="WHV00910.1" /translation="MRMASSDAPVSGTDGAAGLVPESQQEVLPLEPVAGVQLAAPVAG QSNIIDPWIRMNFVQAPAGEFTVSPRNAPGEVLIDLELGPELNPYLNHLARMYNGYVG GMEVEVVLAGNAFTAGKILFAAVPPSFPTHGISAAQATMLPHVIVDVRQLEPVRLPLP DVRNVMFHFCQENKEPRMRIVAILYTPLRANGAGDDVFTVSCRVLTRPSPDFDFIFLV PPSVESKLKQFTLPNLQPNEMTNSRFPTGIMQLYTSPNANLVVQFQNGRCLLDGTLLG TTPVRAADICSFRGVTSTEVDATDSPRVAGSHRIMVQLKEPDGEEFSPTGPNPAPVGT PDFQAAIFGTLSQRNTGGAGQNSNRAHFAYFYTRNPTFAPGIGTVVFSFDTTDFQNRQ PTKFSPSGVFDDDSSEPFNQFSLPYYNGSLGAVDAGKLAPPVAPNYPGEQILYFRGNI PFKGGYGEGEIDSLLPQEWITHFYAEQAPTQGDAALLRYYNPDTGRVLFECKLHREGF ITINYTGSNALAVPVNGVFRFEGWVNKFYTLTPMGNGNGRRGRRREL" gene 6749..7480 /gene="ORF3" CDS 6749..7480 /gene="ORF3" /note="minor structural protein; small basic protein" /codon_start=1 /product="VP2" /protein_id="WHV00911.1" /translation="MAGAFFAGLASDVLGSGLSSLIGAGANAINQKVEYDYNRHLQSA SFQHDKDMLNSQVEATKHLQREMMAIKEGMLLKGGFSPTDAARGAVNAPMTQILDWNG TRYWAPGAMKTTAYSGRFVSQSTHRPIPNVVHKSDGPIHQTGSATGSFSSLSTSSTRV PSSTSSSSSASRTRDWVSEQQRLSPFMRGSLHTAYVTPPSSSASSVSSVSTVPHYVLD SWTPSFNTKHLPLFAHVRKRGQSQV" ORIGIN 1 gtgaatgaag atggcgtcga atgacgtcgt tactgccctt ggcagccaga aagctaccaa 61 tgacagctat agcacacctc cccccaacaa ggaggaggct agtgtgcttg ccaacgttaa 121 agttggcttt aaaaagatcc tcggggccgt ccctaaggct ccgaaacagc atggcagcac 181 acaaaaaccg ccggtcgtcg agatcgatgg tgtggccatg cgtgtaccct ctcccccccc 241 aaacggtgag gacgcagtcc acttcgtaaa ggaaacggag accatcaagg gactgccaga 301 tttgtccacc gtggagaacg aatctgaaca ctccccgtac acagtccccc cgttgagtga 361 aagggagcac aggccagcaa cagagccatt gcccggcact atacttgaga tgtgggatgg 421 tgagttctac cactactcca tatacgtgga caatggcaag gcccttggag ttcacaaacc 481 accggcagca attagcctag caacgataga cttaacacct atatcgttgt actggagacc 541 ggtttacaca ccgccgtacc ttgtccaccc agagacgctc aagggactgg ctggcgaaaa 601 gttcccctac acggccttca gcaacaactg ctacaacttc tgttgctggg ttctggacct 661 caatgattcg tggttgaacc ggagatccat aactagaaca actggattct tcaaacccta 721 ccaatcctgg aacaggaagc ccctcccaac tgtggatgat ggcaagatca agaaggtcgc 781 gaatgcagtt ctgtgtgccc taggatcact tttctccaag cccattaagg acctccttgg 841 caaattaaaa cccctcaatc tcctgaactt gcttgcatca tgtgactgga ccttttcagg 901 cgtggtggaa acagtcatcc ttgctgcaga gctcttcaat gtcttttgga ccccacctga 961 tgtctccaac ttcatcgctt ccataattgg cgacttcgag atgcaaggac cagaggatct 1021 tgctgtggag cttgttcctg ttatcatggg aggtattggt atggtgttgg ggttcacagc 1081 tgagaagata gggcgtatgt tatcatctgc agcatccacc ctcagggctt gtaaggacct 1141 tggcaattac gccttagaca tcctgaaact agtcatgaag tggtttttcc ctaaaaagga 1201 ggaaaaggcc gagatggaaa ccctgagggc cattgaggac gctatccttg acatggaggc 1261 aattggaaac aaccacctca caacgctgct caaagacaaa gatagcttga gcgcctacat 1321 gaagaccttg gacatggagg aggagaaggc caggaggctc tccactaaat cgtcatcacc 1381 cgacattgtt ggcaccatca acgcgatcct cgcacgcatt gctgccgcaa ggtcactcct 1441 acacaaagcc aaagaggaaa tgttcagtcg ggcgaggcct gttgtcgtta tggtgtctgg 1501 aagacccggc atcggtaaga catatctagc tagacagctt gccaaatcga ttgcgaacag 1561 catgagtggt gatcagagag tgggactcgt tccccgcaat ggggttgacc actgggatgc 1621 ctataggggt gaaagagttg tcctatggga tgactacggc atgggaaata ctatcaaaga 1681 tgccctgacc ctacaagagt tggctgacac ctgcccagtc accctcaact gtgacaggat 1741 cgaaaacaag gggaagatgt ttgacagtga tgtcatcata ataacaacca atcttgtcaa 1801 ccccgctccc ctcgattatg ttaattttga ggcttgctgt aggcgaattg acttccttgt 1861 ttatgccgag gcaccggaca ttgagaaagt caaaaaggat ttccccgggc aacctgacat 1921 gtggcgtgac cattttaaag ctgactcgtc acacataaag ttatcactag ccccacaggg 1981 tggttttgac aagaacggaa acacccctca cgggaagggc accatgaaaa ctctcacgct 2041 acactcactc actgcacgtg tgatgggttt agtgtgtgag aggaaggatg agttccaact 2101 gcagggtgat gaactacagg tttataactt tgacacaaac aaggtctctg catttagaaa 2161 actagcagct gacaacaagt acagttttgt ggagacaatg aaagtcggtg cagtcctcaa 2221 gaatgtaaaa accctggaag atctgaaatc tgcgctaaag ggggttaaat tcaaagagtg 2281 tgaaataatt tacaaggggg ccaagtatag agttgcctcg gatggctgtg gcagtgtctc 2341 agtttccaag atcaaggatg ttgtgtcgca gacatccaat gaagtgcaca cagcgctcct 2401 gagattgagg caagcccggg ccaggtatta tatcagctgc ttccaagacc tcatatacac 2461 cctaatacag gttgctggag cctcctttgt ggtacatagg atctcaaaga gattctcatg 2521 ggaccgctgg atcaaaccca gtaacagccc tcaggaggaa gaacaaccca gcagtgaggt 2581 ggccacaggg agatgggaaa ttgagccaaa agacacggac cctgaaggta aaaagggtaa 2641 aaacaagaag ggaaggggaa ggaaacacac ggccttctct agtaagggtc ttagtgatga 2701 agagtatgat gagttcaaaa gaatcagaga ggagaagaac ggcaagtact ccatagaaga 2761 atacctccag gaccgtgaca gattttacga ggaagtggca gttgcaaggg caacggaaga 2821 ggacttctgt gaggaagaag tggcaaagat cagacagaga atcttcaggc ccacaaagaa 2881 gcagaggaag gaggagcgtg gcgtcctagg gctggtcact ggttcagaaa tcaggaagag 2941 aagaccagat gacttccagc ctaaaggtaa cttgtgggct gatgacacca ggagcgtgga 3001 ctacaacgaa aagctggagt ttgaggcccc tccgagcgtg tggtcacgta tcgtacccct 3061 cggcactggc tggggtttct gggtctcctc caaccttctc ataacaacaa cacacgtcct 3121 gccaaaagga ttgaaggagc tgttcggggt tgatatcaaa caagtccaga tacacaagtc 3181 aggtgagttc tgtaggttca ggtttccaag accaatcaga ccagatgtca caggcctcat 3241 ccttgaagaa ggggcccctg aaggtacggt gtgttccatc cttgtcaaaa gaccgactgg 3301 agaaatgatc ccacttgcag tgaggatggg cacccacgct tctatgaaaa tccagggtag 3361 aacggttggt ggtcaaatgg gcatgttgct cacaggagca aatgccaaaa acatggattt 3421 gggcacgaac cctggtgatt gtggatgccc gtacattttt aagaggggca atgacattgt 3481 ggtagctggg gtccacactg cagctgcacg gggtggcaac actgtgatct gtgccacgca 3541 aggagctgac ggagaggccg tccttgaagg aggagaggac aaggggacgt actgtggtgc 3601 cccaatactt ggattcggga aggcccccaa actcagtacc aagacaaagt tctggcgatc 3661 ctcccctgat gcgcttcccc cggggacgta tgagccagca tacctaggtg gaaaggaccc 3721 aagggttgag aagggcccgt cactccagca ggtcatgaga gaacaactta aaccttttac 3781 cgaacccaga ggaaaacccc caaaacccaa cgttcttgat gaggcaaaga aaactgtgat 3841 gaacgtgttg gagcagacta taaaccctgc caaaccctgg tcatactccc aagcatgtgc 3901 ttcgcttgac aagacaactt caagtggtag cccgcaccac ctgagaaaga atgatcattg 3961 gaatggtgaa tcttttaccg gtcctttggc cgatcaagct tcaaaagcaa acctaatgta 4021 tgaacaggct aaacacatga gtcccgttta cactgcggcc ctcaaagatg aactggtcaa 4081 gactgataag atctacaaga aaataaagaa gaggctgctg tggggctctg acctgggtac 4141 tatggtcagg tgtgctaggg cttttggtgg gttgatggat agcatgaaag agagttgtgt 4201 gatgttaccc tgcagagttg gtatgaacat gaatgaagat ggaccaatca tttttgacaa 4261 gcatgcaaag tacaaatatc actatgatgc agattactcc agatgggatt ccacacaaca 4321 aaggagcatt ttatctgctg ccatggaggt tatggtgaaa ttctcagctg aaccggaact 4381 ggcacaagtg gtcgctgaag acttgctcgc cccaagccaa ctcgacgtgg gcgactttgt 4441 ggtgtcagtt caagaaggtc ttccctcagg tgttccgtgt acttcccaat ggaactccat 4501 agcacactgg atcatcaccc ttagtgcaat ggcagaagtt tctggtctct ccccagatgt 4561 gatccaagct cactcatgct tctctttcta tggtgatgat gagatagtta gcacagacat 4621 caacttggac ccagcaaagt taaccttaaa actcagggaa tatggattgg tccccaccag 4681 accagacaaa actgaaggcc cattagtcat cacagaggat ctccatggat tgaccttcct 4741 acgcagacac atcacacgag atcctgctgg atggtttgga aaattagacc aggattcaat 4801 cttaaggcaa ctctattgga ctagaggacc caaccatgaa aacccctacg agtgcatggt 4861 cccacactca cagcgcgcaa ctcagttaat ggcgctgttg ggtgaggcat cattgcacgg 4921 tccccagttc tacaagaaag tcagcaagat ggttatcaat gagatcaaga gtggtggtct 4981 ggaattttac gtgcccagac aagaggccat gttcagatgg atgagattct ctgacctcag 5041 cacgtgggag ggcgatcgca atctggctcc cgacggtgtg aatgaggatg gcgtcgagtg 5101 acgcgcccgt ttctggcacc gatggtgcgg caggactcgt cccagagagt caacaagaag 5161 tcttgccttt agagcccgtc gcgggagtcc agctggctgc tcccgtagca gggcaaagta 5221 atataattga cccctggatt agaatgaatt ttgtgcaagc cccggccggt gagttcactg 5281 tttcccctcg gaacgcaccg ggtgaggtgc ttattgattt agaattagga ccagaattaa 5341 atccctatct caatcatctt gcaagaatgt acaatgggta tgtgggagga atggaggtgg 5401 aagttgtcct tgccgggaat gcgttcacgg cgggtaagat cttattcgca gcagtgcccc 5461 ccagcttccc aacccatggc atttctgcag cacaggcaac catgttacca catgtgattg 5521 tggatgtcag gcagctggag cctgtccggc tccctcttcc tgatgtcagg aatgtgatgt 5581 tccatttctg tcaagaaaat aaggagccgc gcatgagaat tgtggcaata ttgtacaccc 5641 ctctccgtgc caacggtgcg ggtgatgatg tcttcactgt ctcatgtcgt gtgctaacaa 5701 ggccctcacc agattttgat tttattttct tggttccccc ctctgtagag agtaagttga 5761 aacagttcac cctcccaaac ctgcagccaa atgaaatgac caattcaaga ttccccactg 5821 gcatcatgca actctacacc agtccaaatg ccaatttggt tgtccagttc caaaatggca 5881 ggtgtctgct tgatggcaca ctcctcggca ccacccctgt cagagctgct gacatctgca 5941 gtttcagagg agttacctca actgaagttg atgcaactga cagccccaga gtggcagggt 6001 cccatagaat tatggtgcag ctcaaggagc cagatggaga ggagttctca cccacaggtc 6061 ctaaccctgc ccctgttggc actccagact ttcaagcagc catatttggc acccttagcc 6121 aaagaaacac tggcggggct gggcagaact ccaacagagc ccacttcgca tacttctaca 6181 ctagaaaccc cacatttgca ccaggtatag ggacagttgt gttttctttt gatactactg 6241 actttcaaaa tcgccaacct actaaattct ctccttctgg tgtgtttgat gatgattctt 6301 ctgaaccttt taatcaattc tctctaccat attataatgg atcactcggt gcagtggatg 6361 ctgggaaact agctccgcct gtagcaccca actacccagg tgagcagatt ctttatttta 6421 gagggaatat tcccttcaaa ggtgggtatg gagagggtga aattgatagc ttgctccccc 6481 aggagtggat cacccatttt tatgcagagc aggctcccac acaaggtgac gcagccctgc 6541 tgcgttacta caaccctgac actggcagag tcctctttga gtgcaaactc caccgcgagg 6601 gattcatcac aatcaattac acagggtcca atgctcttgc tgtaccagtc aatggagtct 6661 tcagatttga gggctgggtt aacaaattct acacactgac ccccatggga aatggcaacg 6721 gccgcagggg tagaagaaga gagttataat ggctggagct ttctttgcag gtcttgcttc 6781 tgatgttctc ggcagcggtt tgtcttcact tattggtgcc ggtgccaatg ccataaatca 6841 aaaggttgaa tatgattaca ataggcactt gcagtcagct tctttccaac atgataagga 6901 tatgctcaac tcacaagtgg aagccacaaa gcatttacaa agggagatga tggccatcaa 6961 ggaaggcatg ctgctcaagg gtgggttctc ccccactgat gcagcaagag gagctgtcaa 7021 cgcccctatg acacaaattt tggactggaa tggcaccaga tactgggccc caggtgcaat 7081 gaaaaccacg gcttactcag gccgttttgt tagccaatcc actcacaggc ctatccccaa 7141 tgttgttcac aagagtgatg gacccataca tcaaactggg tcagccacag ggtccttctc 7201 ttctctctcc acatcatcca cccgtgttcc atcatccaca tcctcatcta gtagtgcttc 7261 tagaacaagg gactgggtgt ctgaacagca aaggctcagc cctttcatga gaggctctct 7321 tcacactgca tatgtgactc ctccctcaag ctctgcctcc tcagtaagct ctgtatctac 7381 agtcccacat tatgttctgg attcatggac cccttctttt aacactaagc atctaccttt 7441 gtttgctcat gttaggaaaa ggggacaatc tcaagtttaa tctaccactc atggtttgat 7501 tgatttgttt tgtaattagt gaaatgttga ttctttctaa ttcggcattt //