Typing tool
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Typing tool
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Complete norovirus genomes
| OQ702254 | GII.6 | |
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| GII.P7 |
ORF1: 1..5085
ORF2: 5066..6715
ORF3: 6715..7494
LOCUS OQ702254 7516 bp RNA linear VRL 02-APR-2023
DEFINITION Norovirus GII isolate 23GZ03005_GII.6-GII.P7 nonstructural
polyprotein (ORF1) gene, partial cds; and VP1 (ORF2) and VP2 (ORF3)
genes, complete cds.
ACCESSION OQ702254
VERSION OQ702254.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7516)
AUTHORS Su,W., Xie,H. and Zeng,Q.
TITLE Direct Submission
JOURNAL Submitted (28-MAR-2023) Derpartment of Virology, Guangzhou Center
for Disease Control and Prevention, Qide Road No. 1, Baiyun
District, Guangzhou, Guangdong 510440, China
COMMENT ##Assembly-Data-START##
Assembly Method :: Geneious Prime v. 23.0.4
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7516
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="23GZ03005_GII.6-GII.P7"
/isolation_source="anal swab"
/host="Homo sapiens"
/db_xref="taxon:122929"
/country="China: Guangzhou"
/collection_date="24-Feb-2023"
/note="genotype: GII.6[P7]"
gene <1..5085
/gene="ORF1"
CDS <1..5085
/gene="ORF1"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="WEW53114.1"
/translation="ASNDATTAFGSQNSVNDSFNTAPSKKEEVGAFSNIKVGFKKMLG
AVPKGTKAPSNDQHCPTVKIGTKTLTVPPEPPNGEDIVQFDAKSETVLGLPDLTTVQN
EHENTPYSVPPLSEREHRPATEPLPGTILEMWDGEFYHYSIYVSGGKALGVHKPPAAI
SLATIELTPISLYWRPVYTPNYLVCPDTLKGLAGEKFPYTAFSNNCYNFCCWVLELND
TWLSRRSISRTTGFFKPYQSWNRKPLPTVDDGKIKKVANAILCALGSLFSKPIKDLLG
KLKPLNLLHLLASCDWTFAGIVETVILMAELFNIFWTPPDVSNFISSLIGDFELQGPE
DLAVELVPVVMGGIGMVLGFTAEKIGRMLSSAASTLRACKDLGNYALDILKLVMKWFF
PKKEEKAEMETLRAIEDAVLDMEAIGNNHLTTLLKDKDSLTAFMKTLDLEEEKARKLS
TKSSSPDIVGTINAILARIAAARSLLHKAKEEMFSRIRPVVVMISGRPGIGKTHMARH
LAKSIANTMSGDQRVGLVPRNGVDHWDAYRGERVVLWDDYGMGNPVKDALTLQELADT
CPVTLNCDRIENKGKMFDSDVIIITTNLVNPAPLDYVNFEACSRRVDFLVYAESPEIE
KVKRDFPGQPDMWKDHFKPDFSHIKLTLAPQGGFDKNGNTPHGKGTMRSLTQGSLTAR
VAGLVHERRDEFQLQGNDLQTYNFDTNRVSAFRKLAADNKYGIMETMRVGAALKNVKT
LEDLKAALRDVKFNECEIIYRNSKYRISSNGKGSVSVDKVEGQTSQTANEVCSALLRL
RQARARYYVSCFQDLIYTLMQVAGASFVVSRISKRFCWERWVKPTEAQETSESEKEVA
QSSWEIEPKDTEPEGKKGKNKKGRGKKHTAFSSKGLSDEEYDEFKRIREERNGKYSIE
EYLQDRDRYYEEVAVARATEEDFCEEEEAKIRQRIFRPTKKQRKEERGVLGLVTGSDI
RKRRPDDFQPKGKLWADDTRSVDYNERLDFEAPPSVWSRIVPLGTGWGFWVSSNLLIT
TTHVLPKGIKELFGVEIKQIQIHKSGEFCRFRFPRPIRPDVTGLVLEEGAPEGTVCSI
LVKRPTGEMIPLAVRMGTHASMKIQGRTVGGQMGMLLTGANAKNMDLGTGPGDCGCPY
IYKRGNDIVVAGVHTAAARGGNTVICATQGQDGEAVLEGNENLGTYCGAPILGPGKAP
KLSTKTKFWRSSPDALPPGTYEPAYLGGKDPRVEKGPSLQQVMRDQLKPFTEPRGKPP
RPAILEEAKKTVMNVLEQTIDPAKPWTYSQACASLDKTTSSGSPHHVKKNDHWNGESF
TGPLADQASKANLMYEQAKHVQPVYTAALKDELVKTDKIYKKIKKRLLWGSDLGTMIR
CARAFGGLMDSMKASCIALPCRVGMNMNEDGPIIFDKHSKYRYHYDADYSRWDSTQQR
SILSAAMEVMVRFSAEPELAQVVAEDLLAPSQLDVGDFVISVQEGLPSGVPCTSQWNS
IAHWILTLSAMAEVSGLSPDVVQAHSCFSFYGDDEIVSTDINLDPMKLTQKLREYGLA
PTRPDKTEGPLVITEDLTGLTFLRRSIARDPAGWFGKLDQDSILRQLYWTRGPNHENP
YESMVPHSQRATQLMALLGEASLHGPQFYKKVSKMVINEIKSGGLEFYVPRQEAMFRW
MRFSDLSTWEGDRNLAPEGVNEDGVD"
mat_peptide <1..993
/gene="ORF1"
/product="p48"
mat_peptide 994..2091
/gene="ORF1"
/product="NTPase"
mat_peptide 2092..2610
/gene="ORF1"
/product="p22"
mat_peptide 2611..3009
/gene="ORF1"
/product="VPg"
mat_peptide 3010..3552
/gene="ORF1"
/product="Pro"
mat_peptide 3553..5082
/gene="ORF1"
/product="RdRp"
gene 5066..6715
/gene="ORF2"
CDS 5066..6715
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="WEW53115.1"
/translation="MKMASTDAAPSNDGAANLVPEANNEVMALEPVVGASIAAPVVGQ
QNIIDPWIRENFVQAPQGEFTVSPRNSPGEMLLDLELGPELNPYLSHLSRMYNGYAGG
MQVQVVLAGNAFTAGKIIFAAVPPHFPVENISAAQITMCPHVIVDVRQLEPVLLPLPD
IRNRFFHYNQEDTPRMRLVAMLYTPLRANSGEDVFTVSCRVLTRPAPDFEFTFLVPPT
VESKTKPFTLPILTLGELSNSRFPAPIDMLYTDPNEGVVVQPQNGRCTLDGTLQGTTQ
LVPTQICAFRGKLIGQTSRSPDSNSTDSAPRRRDHPLHVQLENLDGTQYDPTDEVPAT
LGAVDFKGTIFGVASQRDTSGSQVGATRAHEVHINTTDPRYTPKLGSILMYSESLDFE
TGQPVRFTPIGMGENDWHQWELPDYSGRLTLNMNLAPAVAPAFPGERILFFRSIVPSA
GGYGSGQIDCLIPQEWVQHFYQEAAPSQSAVALIRYVNPDTGRNIFEAKLHREGFITV
ANSGNNPIVVPPNGYFRFEAWVNQFYTLTPMGTGQGRRRNQ"
gene 6715..7494
/gene="ORF3"
CDS 6715..7494
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="WEW53116.1"
/translation="MASAFLAGLAGDVITNGVGSLINAGANAINQKVEYDFNKQLQLA
SFKHDKEMLQSQVSATKQLQQEMMNIRQGVLTAGGFSPADAARGAVNAPMTKILDWNG
TRYWAPNSMKTTSYSGQFSSSPVHRSPAPSQLVASSKGKLQNDSASVYSSPSSVSSQS
THSTVLSTGTRSSRPTTTSTATPTLSRTSDWVRGQNERLSPFMDGALQTAFVTPPSSK
ASSNGTVSTVPKAVLDSWTPMFNTHRQPLFAHLRRRGESQV"
ORIGIN
1 gcgtctaacg acgctaccac tgcctttggc agtcaaaact ctgtcaatga cagttttaac
61 accgcccctt ctaagaaaga agaggttggt gcattctcca acatcaaagt tggatttaag
121 aaaatgctgg gtgccgttcc caaggggacc aaagcaccca gcaatgatca gcactgtccc
181 acagttaaga tcgggaccaa aacattaaca gttccccctg agcccccaaa tggtgaagac
241 atcgtgcagt ttgatgcgaa gtcagaaact gtgcttgggc taccagactt aacaacggtg
301 caaaatgaac acgagaacac accatactca gtccccccat tgagtgaaag ggaacacaga
361 ccagccactg agccgctccc tggcacaata ctggagatgt gggatggtga attctaccac
421 tactccatat acgtcagcgg tggcaaagcc ctaggggttc ataagccccc tgcggcaatt
481 agcctcgcga cgatagagct cacacccata tctctttact ggaggcccgt ttacaccccc
541 aactacctgg tctgcccgga cacgttgaaa ggcctcgctg gtgagaagtt cccctacacg
601 gccttcagca acaactgtta caacttctgt tgctgggtgc ttgaactcaa tgacacgtgg
661 cttagcagga gaagcatctc caggaccacc ggcttcttca aaccatacca gtcttggaac
721 aggaaacccc tcccaaccgt tgatgatgga aagatcaaaa aggtggccaa cgcaatcctc
781 tgtgcacttg gatcactgtt ttcaaaacca atcaaagacc tattaggcaa acttaaacca
841 ttgaacttgt tgcacttgct cgcgtcatgt gattggacgt ttgcgggcat agtggagaca
901 gttatcctaa tggcagaact tttcaacatc ttttggacac cgccagacgt ttccaacttc
961 atatcctccc tgataggtga ttttgaattg caagggcctg aggacctggc cgtggagctc
1021 gtccccgtgg tcatgggtgg cataggaatg gttctcggct ttactgctga gaagataggc
1081 cgcatgctgt cgtccgctgc atcaacactg cgggcatgta aagaccttgg gaattatgcc
1141 cttgacatac taaaactggt tatgaaatgg ttcttcccaa agaaagaaga gaaagccgag
1201 atggaaacct taagggcgat tgaggatgcc gtcctggaca tggaggctat aggaaacaat
1261 catctcacaa ccctcctcaa agataaggat agcctcacgg ccttcatgaa gaccctggac
1321 ctagaagagg agaaggcaag gaagctgtcc accaaatcat cctcgccaga catcgtcggt
1381 actatcaatg ccatactggc cagaatagct gctgccagat ccctcctgca caaggctaaa
1441 gaagaaatgt ttagtaggat cagacctgtg gttgttatga tctcgggtag acctggtatt
1501 ggcaaaaccc acatggcaag acacttggct aagagcatcg ccaacaccat gagtggcgac
1561 cagagagtcg ggctcgttcc gcgcaacggg gtcgatcact gggacgccta caggggggag
1621 agggtggtct tatgggatga ttatggcatg ggaaaccctg tcaaagatgc tctaacactg
1681 caagagttgg ccgacacctg cccagtaact ctaaactgtg ataggattga gaacaagggg
1741 aagatgttcg acagtgatgt catcataatc acgaccaacc tagtcaaccc agcacccctc
1801 gattatgtaa acttcgaggc gtgctccaga agggttgact ttctggtcta tgcagagtca
1861 ccagaaattg agaaggttaa gagagatttc cccggccagc ctgacatgtg gaaggaccac
1921 tttaagccag acttctccca tataaaactg actctagccc cccagggtgg atttgacaaa
1981 aatggtaaca ccccgcatgg caagggcacc atgcggtccc taacccaggg gtccctgact
2041 gcaagggttg caggccttgt tcatgagagg agagatgagt ttcagctcca ggggaacgac
2101 cttcaaacat acaactttga caccaacagg gtctccgcat ttaggaagct ggccgcagat
2161 aacaagtatg gaatcatgga aacaatgaga gtaggtgcgg cgcttaagaa tgtcaagacc
2221 ttggaagatc tgaaagctgc cctgagggat gtgaagttca atgagtgtga gataatttac
2281 aggaactcca aatatcgaat ctcctccaac ggtaaaggtt ctgtctctgt tgacaaagtt
2341 gagggccaaa cgtcccagac tgcgaacgag gtgtgttcag cactccttag gctcaggcag
2401 gcaagggcca gatactatgt cagctgcttc caagatctca tctacactct aatgcaggtt
2461 gccggagcgt cattcgttgt cagcaggatt tctaagaggt tctgttggga gagatgggtc
2521 aaaccaaccg aggcccagga aacgagtgaa tccgaaaagg aagtagcaca aagtagctgg
2581 gagattgaac ccaaggacac agaaccagaa ggtaagaagg gtaagaacaa gaaaggaaga
2641 ggcaagaaac acacagcttt ctccagcaaa ggcctgagtg atgaggagta tgacgagttc
2701 aagagaatca gggaagaaag gaacgggaaa tactccattg aagaatacct gcaagaccgg
2761 gatcgctact atgaggaagt ggcggttgcc cgggcgacag aggaggactt ctgtgaagag
2821 gaggaggcca agataagaca aagaatcttc cgccccacaa agaaacagag gaaggaagaa
2881 aggggggtgc ttggcttggt cactggctca gacatcagga agaggagacc agatgatttc
2941 caaccaaagg gcaaactgtg ggcagacgat accagaagtg tggactacaa cgagagactt
3001 gatttcgagg ctcccccgag tgtctggtcg agaatagtcc cattgggcac tggctggggc
3061 ttttgggtct catccaacct cctgatcaca acaacacatg tcctgcctaa ggggattaag
3121 gaactttttg gggtcgaaat caaacagatc caaattcata agtctggaga gttttgcagg
3181 ttcagattcc caagaccaat caggccagat gtcacagggc tcgtgctgga ggaaggtgct
3241 ccagaaggca ctgtctgctc catactcgta aagagaccta caggtgagat gatccctctg
3301 gcagtgagga tgggcacgca tgcatccatg aagatacagg gtaggaccgt cggtggccaa
3361 atgggaatgc tcctcacagg ggctaacgcg aagaacatgg atcttggcac cggccctggt
3421 gactgcggtt gcccttatat ctacaaacgc ggcaatgaca tagttgtcgc gggtgtccac
3481 accgcagcag cccggggagg caataccgtc atatgtgcca ctcaagggca agatggggag
3541 gcagttcttg agggaaatga gaaccttggc acttactgcg gtgccccaat tttgggtccg
3601 ggcaaggcgc ccaaactcag cacgaagacc aaattctggc gttcatcacc agacgctttg
3661 ccgccaggca cttatgagcc tgcctaccta ggaggcaagg accccagagt ggagaaagga
3721 ccatccctgc agcaagtcat gagggatcag ttaaaacctt tcacagaacc cagaggcaaa
3781 ccacctagac ctgcaatctt agaagaagcc aaaaagacag tgatgaatgt tctagaacaa
3841 accatcgacc ctgccaagcc atggacctat tcccaagcat gtgcctcact ggacaagacc
3901 acttctagtg gtagccccca ccatgtcaag aaaaatgacc attggaatgg agaatccttc
3961 accggccccc ttgcagacca agcatccaaa gccaatctca tgtatgagca ggccaaacat
4021 gtgcagcccg tgtacacggc cgctctcaaa gatgagcttg tcaagactga caagatctac
4081 aaaaagataa agaagaggct cttatggggg tcggatcttg gtacgatgat caggtgcgcc
4141 agggcctttg gcggtctcat ggatagcatg aaggcaagct gtatagctct cccatgcagg
4201 gtaggaatga acatgaacga agatggtccc atcatatttg acaagcactc taagtacagg
4261 tatcactatg atgctgacta ttccaggtgg gattcaaccc agcaaaggag cattctctcg
4321 gccgctatgg aagtgatggt gcggttttct gccgaaccag agctggcaca ggtggttgca
4381 gaggacctcc tggcacccag ccaactagat gttggcgatt ttgtcatctc agtccaggag
4441 ggtctgccat caggggtccc atgcacatca cagtggaatt caatagcaca ttggatccta
4501 accctgagtg caatggcaga agtatcaggt ctctcaccag atgtagttca agcccactcc
4561 tgtttctcat tttacggtga cgacgagatc gtcagcactg acataaacct tgaccccatg
4621 aagttgacac agaaactcag ggaatatggt ctggccccca cccggcctga taaaactgaa
4681 ggccccctcg taataactga agacctcacc ggcctaacgt tccttcgtag gtcgattgca
4741 cgagacccag ctgggtggtt tggaaaattg gaccaggact caatcctcag gcagttatat
4801 tggacaagag gccccaatca tgagaatcca tatgagagca tggtccctca ctcccaacgg
4861 gccacacaac tcatggccct tctcggtgaa gcctcactgc atggccccca gttctacaag
4921 aaagttagca agatggtcat caatgaaatc aaaagtggtg gtctggaatt ttatgtgccc
4981 agacaagagg ccatgttcag gtggatgaga ttctctgacc tcagcacatg ggagggcgat
5041 cgcaatcttg ctcccgaggg tgtgaatgaa gatggcgtcg actgacgctg ctccatcgaa
5101 tgatggtgct gccaacctcg taccagaggc caacaatgag gttatggcac ttgaaccggt
5161 ggtgggagcc tcaatcgcgg ctcctgtcgt cggccaacaa aacataattg acccctggat
5221 tagagaaaat tttgtccaag caccacaggg cgagttcacc gtctcaccga gaaactcgcc
5281 tggtgagatg ctattagatc ttgaattagg cccagaactt aacccttacc taagtcattt
5341 gtcccgcatg tacaacgggt atgctggtgg catgcaggtt caggtggtcc tggctgggaa
5401 tgcgttcaca gctgggaaaa tcatctttgc cgccgtgcca ccacattttc ccgtagaaaa
5461 catcagtgca gcccaaataa ctatgtgccc ccatgtaatt gttgatgtga ggcaacttga
5521 accagtactt ttgcccctcc ctgacataag gaacaggttc ttccattaca atcaggaaga
5581 caccccccgg atgaggcttg tggcaatgct ttatactccc ctgagggcta attctggtga
5641 agatgtgttt actgtctctt gtagggtttt aacccgtcct gcccctgatt ttgaattcac
5701 tttcttggtg ccaccaaccg ttgaatcaaa gactaaacct tttacactac ccatattaac
5761 tcttggtgag ctatccaact ctagattccc agccccgata gacatgttgt acactgaccc
5821 aaatgagggg gttgtggtcc agccacaaaa tggtaggtgc actcttgatg gcactctgca
5881 aggcaccaca caactggtcc ccacccaaat ttgtgctttc aggggcaaac taattggcca
5941 gacatcaagg tctccagact caaactcaac tgactcagcc cctcggagaa gggatcaccc
6001 actccatgtg caattagaga atcttgatgg cacgcagtac gacccaactg atgaagtgcc
6061 agcaaccctt ggtgccgttg acttcaaggg gaccattttt ggagtggcca gtcagagaga
6121 cacgtcaggg agccaagtgg gggcaacccg agcccatgag gtgcacatta acacgaccga
6181 tcctaggtat acaccaaaac tggggtccat cctcatgtac tcagagtcgc tagactttga
6241 gactggacag ccggtccgct tcacacctat aggaatgggt gagaacgatt ggcaccagtg
6301 ggagctgcct gactactctg gacgcctgac cctgaacatg aaccttgccc cagctgttgc
6361 tcctgctttt cccggtgaga ggattctttt cttcaggtca atagtcccat ctgctggtgg
6421 ctatgggtct ggacagatag attgcctcat accacaggag tgggttcagc atttctacca
6481 ggaagctgca ccgtcccaat ctgccgtggc actcatcagg tatgtcaatc ctgacacagg
6541 cagaaacatc tttgaggcta agctgcatag ggaaggtttc atcaccgtgg caaattctgg
6601 taacaacccc attgttgtcc cccctaatgg gtatttcagg tttgaagctt gggtgaacca
6661 attttatact ttgaccccca tgggaactgg tcaggggcgc aggaggaatc aataatggct
6721 agtgcttttc ttgcaggtct tgctggcgac gtcataacaa atggcgttgg atctttaata
6781 aatgctggag ctaatgcaat taatcagaaa gttgaatatg attttaataa acagcttcaa
6841 ttggcatcat ttaaacatga taaagagatg ttgcaatcac aagtttcagc aaccaagcag
6901 ttgcagcagg agatgatgaa cataaggcag ggggtgttga ccgctggcgg cttctccccc
6961 gcggacgctg ctagaggggc cgttaacgcc ccaatgacaa agattctgga ttggaatggc
7021 accaggtatt gggcaccaaa cagcatgaaa actacaagct actcaggaca gttctctagc
7081 agccctgttc ataggtcccc tgctccttcc cagcttgttg cctcatcaaa gggtaaattg
7141 caaaatgatt ctgctagtgt atatagctct ccttcctctg tttcttcaca atcaacccat
7201 tcaacagtgc tgtcaacagg aactagatca tccaggccca ctaccacatc cacagcaacc
7261 cccaccttgt ctaggaccag cgactgggtt aggggacaga atgagaggct cagcccgttt
7321 atggacggtg ctctccaaac tgcctttgtc acacctccat cgagcaaagc ttcttcaaat
7381 ggtacggtct caaccgttcc caaagctgtt ttggactcct ggactcctat gtttaacaca
7441 cataggcagc ctctcttcgc ccacctacgc aggcgagggg agtcacaagt ttagtgaaaa
7501 gagtgattag gttttc
//