Typing tool
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Typing tool
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Complete norovirus genomes
| OQ682536 | GII.20 | |
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| GII.P7 |
ORF1: 1..5088
ORF2: 5069..6676
ORF3: 6676..7446
LOCUS OQ682536 7461 bp RNA linear VRL 28-MAR-2023
DEFINITION Norovirus GII isolate 23GZ03002.GII.20[P7] nonstructural
polyprotein (ORF1) gene, partial cds; and VP1 (ORF2) and VP2 (ORF3)
genes, complete cds.
ACCESSION OQ682536
VERSION OQ682536.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7461)
AUTHORS Su,W., Xie,H. and Zeng,Q.
TITLE The genetic characteristics and diversity of norovirus in
Guangzhou, China, From 2019 to 2022
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7461)
AUTHORS Su,W., Xie,H. and Zeng,Q.
TITLE Direct Submission
JOURNAL Submitted (23-MAR-2023) Derpartment of Virology, Guangzhou Center
for Disease Control and Prevention, Qide Road No. 1, Baiyun
District, Guangzhou, Guangdong 510440, China
COMMENT ##Assembly-Data-START##
Assembly Method :: Geneious Prime v. 2023.0.4
Sequencing Technology :: Sanger dideoxy sequencing; Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7461
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="23GZ03002.GII.20[P7]"
/isolation_source="feces"
/host="Homo sapiens"
/db_xref="taxon:122929"
/country="China: Guangzhou"
/collection_date="17-Feb-2023"
/note="genotype: GII.20[P7]"
gene <1..5088
/gene="ORF1"
CDS <1..5088
/gene="ORF1"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="WEU50811.1"
/translation="MASNDATTALGSQKSVNDSNNATPPDKEEIGTFSNIKVGFKKML
GAVPKGTKAPSSDQHRPTVKIGPKTLIIPPEPPNGEDTVQFDAKSETIIGLPDLTTVQ
NEHENTPYTVPPLSEREHRPATEPLPGTILEMWDGEFYHYSVYVSDGKALGVHKPPAA
ISLATIELTPISLYWRPVYTPNYLVSPDTLKGLAGEKFPYTAFSNNCYNFCCWVLELN
DTWLNRRCISRTTGFFKPYQSWNRKPLPTVDDGKIKKVANAILCALGSLFSKPIKDLL
GKLKPLNLLHLLASCDWTFAGIVETVILMAELFNVFWTPPDVSNFIASLIGDFELQGP
EDLAVELVPVVMGGIGMVLGFTAEKIGRMLSSAASTLRACKDLGNYALDILKLVVKWF
FPKKEEKAEMETLRAIEDAVLDMEAIGNNHLTTLLKDKDSLTAFMKTLDLEEEKARKL
STKSSSPDIVGTINAILARIAAARSLLHKAKEEMFSRIRPVVVMISGRPGIGKTHMAR
HLAKSIANTMSGDQRVGLVPRNGVDHWDAYRGERVVLWDDYGMGSPIKDALTLQELAD
TCPVTLNCDRIENKGKMFDSDVIIITTNLVNPAPLDYVNFEACSRRVDFLVYAESPEI
EKVKRDFPGQPDMWKDHFKPDFSHIKLTLAPQGGFDKNGNTPHGKGTMRSLTQGSLTA
RVAGLVHERRDEFQLQGNDLQTYNFDTNKVSAFRKLAADNKYGIMETMRVGTALKSVK
TLEDLKVALRDVKFNECEIIYKSSKYRVSSNGKGSVSVDKVEDNTSQTVNEVHSALLR
LRQARARYYISCFQDLVYTLIQVAGASFVVSRISRRFCWERWVKPTETQEVSEPEKET
AQGRWEIEPKDTEPEGKKGKNKKGRGKKHTAFSSKGLSDEEYDEFKRIREERNGKYSI
EEYLQDRDRYYEEVAVARATEEDFCEEEEAKIRQRIFRPTRKQRKEERGVLGLVTGTD
IRKRRPDDFQPKGNLWADDTRSVDYNERLDFEAPPSVWSRIVPLGTGWGFWVSSNLLI
TTTHVLPKGITELFGVEIKQIQVHKSGEFCRFRFPRPIRPDVTGLVLEEGAPEGTVCS
ILVKRPTGEMIPLAVRMGTHASMKIQGRTVGGQMGMLLTGANAKNMDLGTGPGDCGCP
YIYKRGNDIVVAGVHTAAARGGNTVICATQGQDGEAVLEGNENLGTYCGAPILGPGKA
PKLSTKTKFWRSSPDALPPGTYEPAYLGGKDPRVEKGPSLQQVMRDQLKPFTEPRGKP
PRPAVLEEAKKTVMNVLEQTIDPAKPWTYSQACASLDKTTSSGSPHHVRKNDHWNGES
FTGPLADQASKANLMYEQAKHVQPVYTAALKDELVKTDKIYKKIKKRLLWGSDLGTMI
RCARAFGGLMDSMKASCIALPCRVGMNMNEDGPIIFDKHSKYRYHYDADYSRWDSTQQ
RSILSAAMEVMVRFSAEPELAQVVAEDLLAPSQLDVGDFVISVQEGLPSGVPCTSQWN
SIAHWILTLSAMAEVSGLSPDVVQAHSCFSFYGDDEIVSTDINLDPMKLTQKLREYGL
VPTRPDKTEGPLVITEDLTGLTFLRRSIARDPAGWFGKLDQDSILRQLYWTRGPNHEN
PYESMVPHSQRATQLMALLGEASLHGPQFYKKVSKMVINEIKSGGLEFYVPRQEAMFR
WMRFSDLSTWEGDRNLAPEGVNEDGVE"
mat_peptide <1..996
/gene="ORF1"
/product="p48"
mat_peptide 997..2094
/gene="ORF1"
/product="NTPase"
mat_peptide 2095..2613
/gene="ORF1"
/product="p22"
mat_peptide 2614..3012
/gene="ORF1"
/product="VPg"
mat_peptide 3013..3555
/gene="ORF1"
/product="Pro"
mat_peptide 3556..5085
/gene="ORF1"
/product="RdRp"
gene 5069..6676
/gene="ORF2"
CDS 5069..6676
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="WEU50812.1"
/translation="MKMASNDANPSSDGSANLVPEISNEVMALEPVAGAAIAAPVAGQ
QNIIDPWIRQNFVQAPGGEFTVSPRNAPGEVLLNLPLSPDINPYLAHLSRMYNGYAGG
VEVEVVLAGNAFTAGKIIFAAVPPNFPPENLSPSQITMLPHIIVDVRQLEPVRIPLPD
VRNNFYHYSRENDSTLRLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP
TVESKSKPFTIPMLTIEEMTNSRFPAPLELMTTGPSHDIVVQPQNGRCTIDGVLLGTT
QLSPVNICSLRGIPTKRTNGNDNCFVQLENPNGSAYDPTEDIPAVLGSPDFVGELYGT
ITQRSSDNSTRAHPFTLNTGSPRYTPKIGSVDIRVTDVSDLQDHDPVKLTPVGLSGDS
GSVHQWQLPNYSGVATHNMHLAPSVAPLFPGEQILFFRSTVPGCGGYPNSNIDCLIPQ
EWVQHFYQEGAPARTDVALLRFVNPDTGRVLFECKLHKHGFITVAYSGNHDLVMPPNG
YFRFESWVNQFHTLAPMGTGSGRRRVQ"
gene 6676..7446
/gene="ORF3"
CDS 6676..7446
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="WEU50813.1"
/translation="MAGAFLANLAGGVASNGISSLINAGANAINQKVEYDFNKQLQSA
SFAHDKEMLQAQIQATTQLQRDMMAIKQEMLTAGGFSQADAARGSVGAPMTKLIDWSG
TRYWAPNSMRTTGYSGTFTSQAPSQFTPYSKGSGKQPLSKAVPPSVSSGSSVSSLRTQ
STSLPSNRTVITQSSDSSSPSRSRTSDWVRSQNEMMSPFMDGALHTAFVSPPSSRASS
SGTVSTVPKGVLDSWTPMFNTHRQPLFAHLRRRGESQI"
ORIGIN
1 atggcgtcca acgacgctac cactgccctt ggcagtcaaa aatctgtcaa tgacagtaat
61 aatgccaccc ctcctgacaa ggaggagatt ggcacattct ccaacattaa agttggattc
121 aagaaaatgc tgggtgccgt tcccaaaggt accaaagcac ccagcagtga tcagcatcgc
181 cccacagtta agatcggacc caaaacatta ataatccccc ccgaaccccc aaacggtgag
241 gacaccgtac aatttgacgc aaagtcagaa actataattg gactaccgga cttgacaacg
301 gtgcaaaatg aacacgaaaa tactccatac actgtccccc cattaagtga gagggagcac
361 aggccggcca ctgaaccact tcctggtaca atattggaga tgtgggatgg tgagttctac
421 cattactccg tgtacgtcag cgatggcaaa gctctggggg ttcacaaacc accagcggct
481 ataagtctcg cgacgataga gctcaccccc atatcactct actggagacc cgtttatacc
541 cccaactatt tggtctcccc agacacatta aagggcctcg ctggtgagaa gttcccctac
601 acggccttca gcaacaactg ttataacttc tgttgttggg tgcttgagct caacgacact
661 tggcttaaca gaagatgcat ctccagaacc accggcttct ttaaaccata ccagtcttgg
721 aataggaaac ctctcccaac tgtcgatgat ggaaagatta aaaaggtggc caacgcgatc
781 ctctgtgcac tcggttcgct gttctcaaaa ccaatcaaag atctgttagg caaactcaag
841 ccattgaatc tgctgcactt gctcgcatct tgtgattgga catttgcggg catagtggag
901 acagtcatcc taatggcaga gcttttcaat gtcttctgga ctccaccaga cgtgtccaat
961 tttatagcct ccttgatagg tgattttgaa ttacaagggc ctgaagatct ggctgtggag
1021 ctcgttcctg tggttatggg tggcataggg atggttctcg gcttcaccgc tgagaagata
1081 ggccgcatgc tgtcgtccgc tgcatcaaca ctgcgggcgt gcaaagacct agggaactac
1141 gcccttgaca tactcaaatt ggtcgtgaaa tggttcttcc caaagaagga ggagaaagct
1201 gagatggaga ccttgagggc gattgaagat gctgtccttg atatggaagc tatagggaat
1261 aaccacctca caaccctcct caaggacaaa gacagcctca cagctttcat gaaaaccctg
1321 gatttagaag aggagaaggc aaggaaactg tccactaaat catcttcgcc ggacatagtc
1381 ggcaccatta acgccatact agctaggata gccgctgcta ggtccctact acacaaggcc
1441 aaagaggaga tgttcagcag aatcagacca gtagtcgtca tgatctcagg cagacctggc
1501 attggaaaaa cccatatggc gagacacttg gctaagagca tcgccaacac catgagtggc
1561 gaccagagag ttgggctcgt cccacgcaat ggtgtcgatc actgggacgc ttacagggga
1621 gagagagtgg tcttgtggga tgactacggt atggggagcc ccattaaaga cgccctgaca
1681 ctgcaagaat tggccgacac gtgtccagtc actttaaatt gtgacaggat tgagaataag
1741 gggaagatgt ttgatagtga cgttattata atcacaacca acctagtcaa ccccgcgccc
1801 ctcgactatg tgaacttcga ggcatgttcc aggagagttg acttcctagt ctatgcagag
1861 tcaccagaaa ttgagaaggt caagagagat ttccctggcc agcctgacat gtggaaagat
1921 catttcaagc cagacttttc ccacattaag ctgactctag ccccccaggg tggtttcgac
1981 aagaatggca acaccccaca cggcaagggc actatgcggt ccttgaccca ggggtcctta
2041 actgcgagag ttgcaggcct tgtccatgag aggagagatg agttccagct ccaaggaaat
2101 gaccttcaaa catacaattt tgacaccaac aaagtctccg catttagaaa attggccgca
2161 gacaacaagt atgggatcat ggagacgatg agagttggca cagcactcaa aagtgtgaaa
2221 accttggaag atctcaaagt tgcattgaga gatgtaaaat tcaatgagtg tgaaataatc
2281 tacaagagct ccaagtaccg agtctcttcc aacggtaaag gctcagtctc tgttgacaaa
2341 gttgaagaca acacttccca gactgtgaat gaagtacact cagcactcct cagactcaga
2401 caggcgaggg ccagatacta catcagctgc ttccaagacc tcgtctacac tctcatacag
2461 gttgccgggg catcatttgt tgtcagtagg atctccagaa ggttctgctg ggaaaggtgg
2521 gttaaaccta ccgagaccca ggaggtgagt gagcccgaaa aggaaacggc ccaaggtaga
2581 tgggagattg agcccaagga cacagaacca gaaggcaaga agggcaagaa caagaaggga
2641 aggggcaaga aacacacagc cttctctagc aaaggtctga gtgacgaaga gtacgacgag
2701 ttcaagagga tcagggaaga aagaaatgga aagtactcca ttgaggaata cctgcaggac
2761 cgggaccgct attatgaaga agtagcagtt gctcgggcga cagaggagga cttctgtgaa
2821 gaggaagagg ccaaaataag acaaaggatc ttccgcccga caaggaaaca gaggaaggag
2881 gagagaggcg tgctcggctt ggtcaccggc acagacatca gaaagaggag accagacgat
2941 tttcaaccaa aaggtaacct gtgggcggat gacaccagaa gtgtggacta caacgaaagg
3001 cttgattttg aggcaccccc gagtgtctgg tcaagaatag tcccattagg cactggttgg
3061 gggttttggg tttcatccaa ccttttgatc acaacaacac acgtcctgcc caaggggatc
3121 acagaacttt ttggggttga aattaaacag atccaagttc acaagtctgg agagttctgc
3181 agattcagat tcccaagacc aatcaggcca gatgtcactg gactcgtgtt agaggaaggt
3241 gctccagaag gcactgtttg ctccatactc gtaaagaggc ctacaggtga gatgatcccc
3301 ctagcagtga ggatgggcac gcatgcatcc atgaaaatac agggtaggac cgttggtggc
3361 cagatgggaa tgctcctcac aggggcaaac gcgaagaaca tggatcttgg caccggtccc
3421 ggtgactgcg gatgccctta catctacaaa cgcggcaatg atatagttgt cgcgggtgtc
3481 cacaccgcag cagctcgggg aggcaacact gttatatgtg ccacccaagg gcaggatggg
3541 gaagcagtcc ttgagggaaa tgagaacctt ggcacttact gcggtgcccc aattttgggg
3601 ccaggcaagg cgcccaaact cagcacaaag accaaattct ggcgttcatc accagatgct
3661 ttgccgccag gcacttatga gcccgcctat ctgggaggca aggatcctag agtggaaaag
3721 ggaccatccc tgcaacaagt tatgagggac cagctaaaac ctttcacaga acccagagga
3781 aagccaccta ggccagcagt cttagaagaa gccaagaaga cagtgatgaa tgtcctagaa
3841 cagaccatcg atcctgctaa accgtggacc tattctcaag catgtgcctc actggataag
3901 accacttcca gtggtagccc ccaccatgtc aggaaaaatg accactggaa tggagagtcc
3961 ttcaccggcc ccctcgcaga ccaggcgtcc aaagctaacc tcatgtatga gcaagctaaa
4021 catgtgcagc ccgtgtacac ggccgctctc aaagatgagc ttgtcaagac tgacaagatc
4081 tacaaaaaga taaagaaaag gctcttgtgg gggtcagatc ttggcacgat gatcaggtgc
4141 gctagggcat ttggtggtct catggatagc atgaaggcaa gttgtatagc cctcccatgt
4201 agggtgggaa tgaacatgaa tgaagatggt cccatcatat ttgacaaaca ctccaagtac
4261 aggtaccact atgatgctga ttattccagg tgggattcaa cccagcaaag gagcatcctc
4321 tcagccgcta tggaggtgat ggtgcggttt tctgccgagc cggaactggc acaagtggtt
4381 gcagaggacc tcctggcacc cagccagcta gacgttggtg attttgtcat ctcagtccaa
4441 gagggtctgc catcaggggt cccatgcaca tcacagtgga actcaatagc acattggatc
4501 ctaaccctga gtgcgatggc agaagtgtca ggtctctcac cagatgtcgt ccaagcccac
4561 tcctgcttct cattttatgg cgacgatgaa atcgtcagca ctgatatcaa tcttgacccc
4621 atgaaattga cacagaaact cagggagtat ggcctagtcc ccacccgacc cgataagact
4681 gaaggccccc ttgtaataac tgaagacctc actggcttaa cgttcctgcg caggtcgatt
4741 gcgcgagacc cggccgggtg gtttggaaaa ttggaccaag actcaatcct cagacagcta
4801 tattggacaa gaggccccaa tcacgagaac ccatatgaga gcatggtccc tcattcccag
4861 cgggccacac agctcatggc ccttcttggc gaggcttcac tgcatggccc ccagttttac
4921 aagaaagtta gcaagatggt catcaatgaa atcaagagtg gtggtctgga attttatgtg
4981 cccagacaag aggccatgtt cagatggatg agattctctg acctcagcac atgggagggc
5041 gatcgcaatc ttgctcccga gggtgtgaat gaagatggcg tcgaatgacg ctaatccgtc
5101 cagtgacgga tcagccaacc tcgtcccaga gatcagtaat gaggttatgg cccttgaacc
5161 agtagctggt gctgctattg ctgccccggt tgctggacaa caaaacataa tagatccctg
5221 gattagacaa aattttgtac aggcccctgg tggtgagttc actgtttcac caagaaacgc
5281 cccgggggaa gtacttctaa atttgccctt gagccctgac atcaatccat atttggccca
5341 tttgtccaga atgtacaacg gttatgctgg aggcgtggag gtggaggtgg tcctcgccgg
5401 gaatgcgttc acggcgggaa aaatcatctt cgctgcagtg ccaccaaatt tccctcctga
5461 aaaccttagc ccaagccaaa taacaatgtt gccccacatc atagttgatg tcagacaatt
5521 ggagccagtg cgcatacctt taccagatgt gcgcaacaat ttctatcact attctagaga
5581 aaatgattcc acattgagat tgattgcaat gttgtacact cccctcaggg ccaacaatgc
5641 tggtgatgat gtgttcactg tctcttgtag agtgttgaca aggccatctc ccgactttga
5701 cttcatattt ctggtgccac ccacagttga atctaagtct aaacccttca ccattccaat
5761 gctcaccatt gaggagatga ctaattctag gtttcctgca ccattagagc tgatgactac
5821 agggccgagt cacgacattg ttgtgcagcc acagaacgga cgctgcacca tcgatggtgt
5881 gctactcggc accacacagc tgtccccagt caacatttgc tccttgagag gcatccccac
5941 caagcgaacc aatggaaatg acaactgttt tgtgcaactt gaaaacccta acggttcagc
6001 ttatgatcca acagaagaca tacctgctgt tctagggtca cctgattttg tgggagagct
6061 ctacgggacg atcactcaga ggagctcgga taactcaact agggcccacc ctttcaccct
6121 caacactgga agccctaggt acactcccaa aattggctca gtggacattc gcgtcacaga
6181 cgttagtgac cttcaggacc atgacccagt gaaacttact ccagttggcc tctctgggga
6241 cagtggttca gtccatcagt ggcaacttcc aaattattca ggggtggcaa cccacaacat
6301 gcatctggcc ccatccgttg ctccattgtt tcccggtgaa cagatccttt tcttccggtc
6361 cacagtcccc gggtgtggtg gttatccaaa ctcaaacatc gattgcttga tacctcaaga
6421 atgggtccaa catttctatc aggagggtgc tccagcccgt acggatgtgg ccttgcttag
6481 attcgtaaac cctgacacgg gcagagtgct ctttgagtgc aaattacaca aacatggctt
6541 tatcactgtg gcttactctg gaaatcatga tttggttatg cccccaaatg gttactttag
6601 atttgaatct tgggtgaatc aatttcacac tcttgccccc atgggaacag gctcgggcag
6661 aaggagggtc cagtaatggc aggagctttt ctagcaaatt tggccggtgg cgtagcatcg
6721 aacgggatta gttcgctaat caacgcaggt gctaacgcta tcaatcaaaa agttgagtat
6781 gattttaata aacaactcca gagcgcatca ttcgctcacg acaaagagat gctccaggca
6841 caaatccagg caacaaccca gcttcaacgt gacatgatgg ccatcaagca agagatgttg
6901 accgctggcg gcttctctca agctgatgca gccaggggct cagttggagc accaatgaca
6961 aagctgatag actggagtgg aacaagatat tgggcaccaa attccatgag aacaacaggt
7021 tattctggga ccttcaccag ccaagccccc tcacagttta ccccttactc taaaggatca
7081 ggcaagcagc cactttctaa agcagtgccg ccttcagttt cctctggttc ttctgtgagc
7141 tctctgagaa cgcaatcaac ttctttgcca tctaatcgaa ctgtgataac acaatcatca
7201 gactcctcct caccctctcg gtctagaaca tcagattggg tgcgcagcca aaatgaaatg
7261 atgagcccat tcatggacgg ggcactccac acagctttcg tgtcccctcc gtcgagtagg
7321 gcttctagtt ctggcacagt ctcaaccgtg ccaaagggag ttttggactc ctggactcct
7381 atgtttaaca cgcataggca gccactcttc gcccatctac gtaggcgagg ggagtcacag
7441 atttagtgaa aagattgatt t
//