Typing tool
|
Complete norovirus genomes
OQ451921 | GII.4 Sydney | ||
---|---|---|---|
GII.P31 |
ORF1: 1..4413 ORF2: 4394..6016 ORF3: 6016..6822LOCUS OQ451921 6863 bp RNA linear VRL 22-FEB-2023 DEFINITION Norovirus GII isolate Hu/CHN/2021/GII.P31-GII.4/SJZ8534 nonstructural polyprotein (ORF1) gene, partial cds; and VP1 (ORF2) and VP2 (ORF3) genes, complete cds. ACCESSION OQ451921 VERSION OQ451921.1 KEYWORDS . SOURCE Norovirus GII ORGANISM Norovirus GII Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 6863) AUTHORS Chen,L.-N., Wang,S.-J., Wang,S.-M., Fu,X.-L., Zheng,W.-J., Hao,Z.-Y., Zhou,H.-S., Zhang,X.-J., Zhao,Y.-L., Qiu,C., Seidlein,Lv., Qiu,T.-Y. and Wang,X.-Y. TITLE Molecular epidemiology analysis of symptomatic and asymptomatic norovirus infections in Chinese infants JOURNAL Unpublished REFERENCE 2 (bases 1 to 6863) AUTHORS Chen,L.-N., Wang,S.-J., Wang,S.-M., Fu,X.-L., Zheng,W.-J., Hao,Z.-Y., Zhou,H.-S., Zhang,X.-J., Zhao,Y.-L., Qiu,C., Seidlein,Lv., Qiu,T.-Y. and Wang,X.-Y. TITLE Direct Submission JOURNAL Submitted (17-FEB-2023) Institutes of Biomedical Sciences, Fudan University, Dongling Road, Shanghai, Shanghai 200032, China COMMENT ##Assembly-Data-START## Sequencing Technology :: Sanger dideoxy sequencing ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..6863 /organism="Norovirus GII" /mol_type="genomic RNA" /isolate="Hu/CHN/2021/GII.P31-GII.4/SJZ8534" /isolation_source="fecal sample" /host="Homo sapiens" /db_xref="taxon:122929" /country="China" /collection_date="Feb-2022" /note="genotype: GII.4" gene <1..4413 /gene="ORF1" CDS <1..4413 /gene="ORF1" /codon_start=1 /product="nonstructural polyprotein" /protein_id="WDE42339.1" /translation="GFFGPYQDWNRKPLPTMDDSKLKKVANIFLCTLSSLFTRPIKDI IGKLKPLNILNILATCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQG PEDLAVELVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKW FFPKKEEANELAMVRSIEDAVLDLEAIENNHMTTLLKDKDSLTTYMRTLDLEEEKARK LSTKSASPDIVGTINSLLARIAAARSLVHRAKEELSSRPRPVVVMISGRPGIGKTHLA RELAKKIAASLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALKLQELA DTCPLTLNCDRIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPE VEKAKRDFPGQPDMWKNAFSPDFSHIKLSLAPQGGFDKRRHTPHGEGVMKTLTTGSLI ARASGLLHERLDEYELQGPALTTFNFDRNKILAFRQLAAENKYGLMDTMRVGKQLKDV KTMSDLKQALKNIAIKKCQIVYNGGTYTLEADGRGSVKVDKVQSATVQTNNELAGALH HLRCARIRYYVKCVQEALYSIIQIAGAAFVTTRIAKRMNIQNLWSKPQVEDTEEMANK DGCLKPKDDEEFVVSSDDIKTEGKKGKNKSGRGQKHTAFSSKGLSDEEYDEYKRIREE RNGKYSIEEYLQDRDRYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASL GLVTGSEIRKRNPEDFKPKGKLWADDDRSVDYNEKLNFEAPPSIWSRIVNFGSGWGFW VSPSLFITSTHVIPQGAKEFFGVPIKQIQIHKSGEFCRLRFPKPIRTDVTGMILEEGA PEGTVATLLIKRPTGELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTT PGDCGCPYIYKRGNDYVVIGVHTAAARGGNTVICATQGSEGEATLEGGDSKGTYCGAP ILGPGSAPKLSTKTKFWRSSTTPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPF TEPRGKPPRPNVLEAAKKTIINVLEQTIDPPQKWSFAQACASLDKTTSSGHPHHMRKN DCWNGESFTGKLADQASKANLMFEEGKNMTPVYTGALKDELVKTDKVYGKVKKRLLWG SDLATMVRCARAFGGLMDELKAHCVTLPVRVGMNMNEDGPIIFEKHSRYRYHYDADYS RWDSTQQRDVLAAALEIMVKFSPEPHLAQIVAEDLLSPSVMDVGDFQISISEGLPSGV PCTSQWNSIAHWLLTLWVLSEVTDLSPDIIQANSLFSFYGDDEIVSTDIKLDPERLTA KLKEYGLKPTRPDKTEGPLVISEDLDGLTFLRRTVTRDPAGWFGKLEQGSILRQMYWT RGPNHEDPFETMIPHSQRPIQLMSLLGEAALHGPAFYSKISKLVIAELKEGGMDFYVP RQEPMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE" mat_peptide <1..303 /gene="ORF1" /product="p48" mat_peptide 304..1401 /gene="ORF1" /product="NTPase" mat_peptide 1402..1938 /gene="ORF1" /product="p22" mat_peptide 1939..2337 /gene="ORF1" /product="VPg" mat_peptide 2338..2880 /gene="ORF1" /product="Pro" mat_peptide 2881..4410 /gene="ORF1" /product="RdRp" gene 4394..6016 /gene="ORF2" CDS 4394..6016 /gene="ORF2" /note="major capsid protein" /codon_start=1 /product="VP1" /protein_id="WDE42340.1" /translation="MKMASSDVNPSDGSAANLVPEVNNEVMALEPVVGAAIAAPVAGQ QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG FEVQVILAGNAFTAGKVIFAAVPPNFPTEGLSPSQVTMFPHIVVDVRQLEPVLIPLPD VRNNFYHYNQSNDPTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP TVESRTKPFSVPVLTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT QLSPVNICTFRGDVTHITGSHNYTMNLASQNWSNYDPTEEIPAPLGTPDFVGKIQGML TQTTRTDGSTRGHKATVYTGSADFAPKLGRVQFETDTNNDFEANQNTKFTPVGVIQDG GTTHRNEPQQWVLPSYSGRNTPNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD CLLPQEWVQYFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV IPPNGYFRFDSWVNQFYTLAPMGNGAGRRRAL" gene 6016..6822 /gene="ORF3" CDS 6016..6822 /gene="ORF3" /note="minor structural protein; small basic protein" /codon_start=1 /product="VP2" /protein_id="WDE42341.1" /translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA SFQFSSNLQQASFQHDKEMLQAQIEATKRLQQEMMKVKQAMLLEGGFSETDAARGAIN APMTKTLDWSGTRYWAPDARTTTYNAGRFSTPQPSGALPGRANFRDAVPARGSSSKSS NSSTATSVYSNQTTSTRLGSTAGSGTSVSSFPSTARTRSWVEDQSRNLSPFMRGAHNI SFVTPPSSRSSSQGTVSTVPKEILDSWTGAFNTRRQPLFAHIRKRGESRV" ORIGIN 1 ggcttcttcg ggccgtacca ggattggaac aggaaacccc tccccactat ggatgactcc 61 aaattaaaga aggtagccaa catattcttg tgcactttgt cttcactatt caccaggccc 121 attaaggaca taatagggaa gttgaaacct ctcaacatcc ttaatattct ggctacatgt 181 gattggacct tcgcaggcat agtggaatcc ttaatactct tggcagaact ctttggagtt 241 ttctggacac ccccagatgt gtctgcgatg atcgccccct tgcttggtga ttatgaactg 301 caaggacccg aggaccttgc agtggaactg gtcccagtag tgatgggggg gataggtttg 361 gtgctaggat ttaccaaaga gaagatcggt aaaatgttgt catccgctgc atccacttta 421 agagcttgca aagaccttgg tgcatacgga ctggaaatct taaaattggt catgaagtgg 481 ttcttcccaa agaaagagga agcaaatgaa ctggccatgg tgagatccat cgaggatgca 541 gtactagacc tcgaggcaat tgaaaacaac cacatgacca ccctgctcaa agacaaagac 601 agcttgacaa cctacatgag aacccttgac cttgaggagg agaaagccag aaaactctca 661 accaaatctg cttcacccga tattgtgggc acaatcaact ctcttctggc aagaatcgct 721 gctgcacgct ccctagtgca tcgggcgaaa gaagagctct ccagcaggcc gagacctgtc 781 gttgtaatga tatcgggaag accagggata gggaaaactc accttgccag ggagctggcc 841 aagaagatcg cggcctccct cacaggggac cagcgtgtgg gccttatccc acgcaatggt 901 gtcgaccact gggacgcata caagggcgaa agggttgtcc tatgggacga ctatggaatg 961 agcaacccca tccatgatgc ccttaagttg caggagcttg ctgacacttg ccccctcacg 1021 ctaaattgtg acagaattga gaacaaagga aaagtctttg acagtgatgc cataattatc 1081 accaccaacc tggccaaccc agcaccactg gattatgtca actttgaagc gtgttcgaga 1141 cgcattgatt tcctcgtgta cgcagaagcc cctgaggtgg agaaggcaaa gcgcgacttc 1201 ccaggtcaac ctgacatgtg gaaaaacgct tttagtcctg acttctcaca cataaaactg 1261 tcattggctc cacagggtgg ttttgacaag agacggcaca ccccgcatgg agaaggggtc 1321 atgaagaccc tcaccactgg ctccctcatc gcccgagcat cagggttact ccatgagagg 1381 ctagatgaat atgaattgca aggcccagcc ctcaccactt tcaactttga ccgcaacaag 1441 atacttgctt ttaggcagct tgctgctgaa aacaagtatg ggctgatgga cacaatgaga 1501 gttggaaaac agctcaagga tgtcaagact atgtcagacc tcaaacaagc actcaagaac 1561 atcgcgatca agaagtgcca gatagtgtac aatggtggca cctacacact tgaggctgat 1621 ggcaggggca gtgtgaaagt tgataaagtg caaagtgcca ctgtgcagac caacaatgaa 1681 ctagccggtg ccctacacca cctaagatgc gctagaatca gatactatgt taagtgcgtc 1741 caggaggcac tgtattccat catccaaatc gctggggctg cattcgtcac cacgcgcatc 1801 gctaagcgca tgaatataca gaatctctgg tccaagccac aggtggaaga cacagaagag 1861 atggctaaca aagatggttg cctaaaaccc aaagatgatg aagagtttgt cgtttcatcc 1921 gacgacatca aaactgaggg caagaaaggg aagaacaagt ccggccgtgg gcagaagcac 1981 acagcctttt caagtaaagg gctcagtgat gaggagtacg atgagtacaa gagaatcaga 2041 gaagaaagga atggtaagta ctccatagaa gagtaccttc aggacagaga caggtactac 2101 gaggaggtgg ccattgccag ggcaaccgaa gaggacttct gtgaagaaga agaggccaaa 2161 atccggcaga ggattttcag accaacaagg aaacaacgca aagaagagag ggcttctctc 2221 ggcttggtca caggttctga aatcaggaag agaaacccag aagacttcaa acccaaggga 2281 aagctgtggg ctgatgacga cagaagtgtt gactacaatg agaaactcaa ctttgaggcc 2341 ccaccaagca tctggtcgcg gatagtcaac tttggttcag gctggggctt ctgggtctcc 2401 cccagtctgt ttataacatc aacccatgtc ataccccaag gtgcaaagga gttcttcgga 2461 gtccctatca agcaaatcca gatacacaag tcaggtgaat tctgccgatt gagattccca 2521 aagccaatca gaaccgatgt gacgggcatg attctagaag aaggtgcgcc cgaggggacc 2581 gtggccacac tgcttatcaa gagaccaact ggagagctca tgcctctggc agccagaatg 2641 gggacccatg caaccatgaa aattcagggg cgcacagttg gagggcaaat gggtatgctc 2701 ctgacaggat ctaacgccaa gagtatggac ctaggcacaa caccaggtga ctgcggctgc 2761 ccctacatct acaagagggg gaatgactac gtggtcatag gggtccatac ggctgctgcc 2821 cgtggaggaa acactgtcat atgtgccacc cagggaagtg agggagaggc cacacttgaa 2881 ggaggtgaca gtaaagggac atactgtggc gcgccaatct tgggaccagg gagcgctccg 2941 aagctcagca ctaagactaa gttttggagg tcatccacaa caccactccc acctggcacc 3001 tacgaaccag cctacctcgg tggcaaagac cctagagtca aaggtggccc ttcattgcaa 3061 caagttatga gggaccagct gaagccattc acagaaccca gaggcaaacc accaagacca 3121 aatgtgttgg aagctgccaa gaaaaccatc atcaatgtcc ttgagcaaac aattgatcca 3181 ccccaaaaat ggtcatttgc gcaagcttgc gcatcccttg acaaaaccac ctccagcggc 3241 cacccgcacc acatgcggaa aaacgactgt tggaatgggg agtccttcac aggaaagttg 3301 gctgaccaag cctccaaggc caacctaatg tttgaagagg gaaagaacat gactccagtc 3361 tatacaggtg cacttaaaga tgagttggta aagaccgata aagtgtatgg taaggtcaag 3421 aagaggctcc tatggggttc agatctggcg accatggtac ggtgcgcccg agcttttgga 3481 ggcctcatgg atgaactcaa ggcacactgt gtcacactcc ctgtcagagt tggtatgaac 3541 atgaatgagg atggccccat catcttcgag aagcactcca gatatagata tcattatgat 3601 gctgactatt cccggtggga ctcaacacaa caaagggatg tgctggcagc agcactagag 3661 atcatggtta agttctctcc agaaccacac ctggcccaga tagttgcaga agacctcctt 3721 tcccctagcg tgatggatgt gggtgacttt caaatatcaa taagtgaggg tctcccctct 3781 ggggtgcctt gcacctccca gtggaattcc atcgcccact ggctcctcac tctctgggtg 3841 ctctctgaag tcacggacct gtcccctgat attattcagg ccaactccct tttctccttc 3901 tatggtgatg atgagattgt aagcacagat ataaagttgg acccagagag gctaacagca 3961 aagctcaagg agtacgggct aaaaccaacc cgccccgaca aaactgaagg accccttgtc 4021 atctctgaag acctggatgg tctgacattc ctccggagaa ctgtgacccg tgatccagct 4081 ggctggtttg gaaaattgga acaaggttca attcttaggc aaatgtactg gaccaggggc 4141 cccaaccatg aagacccatt tgaaacaatg ataccacact cccaaagacc catacaattg 4201 atgtccttgc tgggcgaggc tgcactccac ggcccggcat tctacagcaa aattagcaaa 4261 ttagtcattg cagagttgaa ggaaggtggc atggattttt acgtgcccag acaagagcca 4321 atgttcagat ggatgagatt ctcagatctg agcacgtggg agggcgatcg caatctggct 4381 cccagttttg tgaatgaaga tggcgtcgag tgacgtcaac ccatctgatg ggtccgcagc 4441 caacctcgtc ccagaggtca acaatgaggt tatggctctg gagcccgttg ttggtgccgc 4501 cattgcggca cctgtagcgg gccaacaaaa tgtaattgac ccctggatta gaaacaattt 4561 tgtacaagcc cctggtggag agttcacagt atcccctaga aacgctccag gtgaaatact 4621 atggagcgcg cccttgggcc ctgatctaaa tccctacttg tctcatttgg ccagaatgta 4681 caatggttat gcaggtggtt ttgaagtgca ggtaatcctc gcggggaacg cgttcaccgc 4741 cgggaaggtc atatttgcag cagtcccacc aaatttccca actgaaggct tgagccccag 4801 ccaggtcact atgttccccc atatagtagt agatgttagg caactagaac ctgtgttgat 4861 tcccttaccc gatgttagga ataatttcta tcactacaat caatcaaatg accccactat 4921 taagttgata gcaatgttgt atacaccact tagggctaat aatgctgggg atgatgtctt 4981 cacagtttct tgtcgagttc tcacgagacc atcccccgat tttgacttca tatttctagt 5041 gccacccaca gttgagtcaa ggactaaacc attctctgtc ccagttttga ctgttgagga 5101 gatgaccaat tcaagattcc ccattccctt ggaaaagttg ttcacgggtc ccagcagtgc 5161 cttcgttgtc caaccacaaa atggtaggtg cacgactgat ggcgtgctcc taggcaccac 5221 ccaactgtct cctgtcaaca tctgcacctt cagaggagat gtcacccata tcacaggtag 5281 tcataactac acaatgaatt tggcttctca aaattggagc aactacgacc caacagaaga 5341 aatcccagcc cctctaggga ctccagactt tgtggggaag atacaaggca tgctcaccca 5401 aaccacaagg acagatggct caacgcgcgg ccacaaagcc acagtgtaca ctgggagcgc 5461 cgactttgct ccaaaactgg gtagagtcca atttgaaact gacacaaaca atgattttga 5521 ggctaaccaa aacacaaagt tcaccccagt tggtgtcatc caagatggtg gcaccactca 5581 tcgaaatgaa ccccaacagt gggtgctccc aagttactca ggcaggaaca ctcctaatgt 5641 gcatctggcc cccgctgtgg cccccacttt tccgggtgag caactccttt tctttagatc 5701 caccatgccc ggttgcagcg ggtatcccaa catggatttg gattgtctgc tcccccagga 5761 atgggtgcag tacttctacc aggaggcagc cccagcacaa tctgatgtgg ctctgctaag 5821 atttgtgaat ccagacacag gtagggtttt gtttgaatgt aagcttcata aatcaggcta 5881 tgtcacagtg gctcacactg gccaacatga tttggttatc ccccccaatg gttattttag 5941 gtttgattcc tgggtcaacc agttttacac acttgccccc atgggaaatg gagcggggcg 6001 tagacgtgca ctataatggc tggagctttc tttgctgggt tggcatctga tgttcttggc 6061 tctggacttg gttcccttat caatgctggg gctggggcca tcaaccaaaa agttgagttt 6121 gaaaataata gaaaattgca gcaagcatcc ttccaattta gcagcaatct acaacaggct 6181 tcctttcaac atgacaaaga gatgctccaa gcacaaattg aggctaccaa aaggttacaa 6241 caggaaatga tgaaagttaa gcaggcaatg ctcctagagg gtgggttctc tgagacagat 6301 gcagcccgcg gggcaatcaa cgcccctatg acaaaaacct tggactggag cgggacaagg 6361 tactgggctc ctgatgctag gactacaaca tacaatgcag gccgcttttc caccccccaa 6421 ccatcagggg cgttgccagg aagagccaat tttagggatg ctgtccctgc tcggggttct 6481 tctagtaagt cttctaattc ttctactgct acttctgtgt attcaaatca aacaacttca 6541 acgagacttg gttctacagc tggttctggt accagtgtct cgagcttccc gtcaactgca 6601 aggactagga gctgggttga ggaccaaagt aggaatttgt cacctttcat gaggggggcc 6661 cacaacatat cgtttgtcac cccaccatct agcaggtcct ctagccaagg cacagtctca 6721 accgtgccta aagagatttt ggactcctgg actggcgctt tcaacacgcg caggcagcca 6781 ctcttcgctc acattcgtaa gcgaggggag tcacgggtgt aatgtgaaaa ggcaaaattg 6841 atcatctttc ctttcttaag atg //